cmd.read_pdbstr("""\ HEADER PROTEIN BINDING 27-JUN-13 3J47 \ TITLE FORMATION OF AN INTRICATE HELICAL BUNDLE DICTATES THE ASSEMBLY OF THE \ TITLE 2 26S PROTEASOME LID \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN11; \ COMPND 3 CHAIN: V; \ COMPND 4 FRAGMENT: LAST THREE C-TERMINAL HELICES (UNP RESIDUES 230-298); \ COMPND 5 SYNONYM: PROTEIN MPR1; \ COMPND 6 MOL_ID: 2; \ COMPND 7 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN8; \ COMPND 8 CHAIN: U; \ COMPND 9 FRAGMENT: LAST THREE C-TERMINAL HELICES (UNP RESIDUES 188-308); \ COMPND 10 MOL_ID: 3; \ COMPND 11 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN9; \ COMPND 12 CHAIN: O; \ COMPND 13 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 360-387); \ COMPND 14 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 7; \ COMPND 15 MOL_ID: 4; \ COMPND 16 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN5; \ COMPND 17 CHAIN: P; \ COMPND 18 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 409-442); \ COMPND 19 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 5; \ COMPND 20 MOL_ID: 5; \ COMPND 21 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN6; \ COMPND 22 CHAIN: Q; \ COMPND 23 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 407-431); \ COMPND 24 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 4; \ COMPND 25 MOL_ID: 6; \ COMPND 26 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN7; \ COMPND 27 CHAIN: R; \ COMPND 28 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 397-422); \ COMPND 29 MOL_ID: 7; \ COMPND 30 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN3; \ COMPND 31 CHAIN: S; \ COMPND 32 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 455-478); \ COMPND 33 MOL_ID: 8; \ COMPND 34 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN12; \ COMPND 35 CHAIN: T; \ COMPND 36 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 256-272); \ COMPND 37 SYNONYM: NUCLEAR INTEGRITY PROTEIN 1 \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 4 ORGANISM_TAXID: 559292; \ SOURCE 5 STRAIN: ATCC 204508 / S288C; \ SOURCE 6 MOL_ID: 2; \ SOURCE 7 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 8 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 9 ORGANISM_TAXID: 559292; \ SOURCE 10 STRAIN: ATCC 204508 / S288C; \ SOURCE 11 MOL_ID: 3; \ SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 14 ORGANISM_TAXID: 559292; \ SOURCE 15 STRAIN: ATCC 204508 / S288C; \ SOURCE 16 MOL_ID: 4; \ SOURCE 17 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 18 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 19 ORGANISM_TAXID: 559292; \ SOURCE 20 STRAIN: ATCC 204508 / S288C; \ SOURCE 21 MOL_ID: 5; \ SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 24 ORGANISM_TAXID: 559292; \ SOURCE 25 STRAIN: ATCC 204508 / S288C; \ SOURCE 26 MOL_ID: 6; \ SOURCE 27 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 28 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 29 ORGANISM_TAXID: 559292; \ SOURCE 30 STRAIN: ATCC 204508 / S288C; \ SOURCE 31 MOL_ID: 7; \ SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 33 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 34 ORGANISM_TAXID: 559292; \ SOURCE 35 STRAIN: ATCC 204508 / S288C; \ SOURCE 36 MOL_ID: 8; \ SOURCE 37 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 38 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 39 ORGANISM_TAXID: 559292; \ SOURCE 40 STRAIN: ATCC 204508 / S288C \ KEYWDS ALPHA HELIX BUNDLE, HYBRID METHOD, FLEXIBLE FITTING, PROTEIN BINDING \ EXPDTA ELECTRON MICROSCOPY \ AUTHOR E.ESTRIN,J.R.LOPEZ-BLANCO,P.CHACON,A.MARTIN \ REVDAT 5 21-FEB-24 3J47 1 REMARK \ REVDAT 4 18-JUL-18 3J47 1 REMARK \ REVDAT 3 02-OCT-13 3J47 1 REMARK \ REVDAT 2 25-SEP-13 3J47 1 JRNL \ REVDAT 1 28-AUG-13 3J47 0 \ JRNL AUTH E.ESTRIN,J.R.LOPEZ-BLANCO,P.CHACON,A.MARTIN \ JRNL TITL FORMATION OF AN INTRICATE HELICAL BUNDLE DICTATES THE \ JRNL TITL 2 ASSEMBLY OF THE 26S PROTEASOME LID. \ JRNL REF STRUCTURE V. 21 1624 2013 \ JRNL REFN ISSN 0969-2126 \ JRNL PMID 23911091 \ JRNL DOI 10.1016/J.STR.2013.06.023 \ REMARK 0 \ REMARK 0 THIS ENTRY 3J47 CONTAINS A STRUCTURAL MODEL FIT TO AN ELECTRON \ REMARK 0 MICROSCOPY MAP (EMD-2165) DETERMINED ORIGINALLY BY AUTHORS: \ REMARK 0 F.BECK, P.UNVERDORBEN, S.BOHN, A.SCHWEITZER, G.PFEIFER, E.SAKATA, \ REMARK 0 S.NICKELL, J.M.PLITZKO, E.VILLA, W.BAUMEISTER, F.FORSTER \ REMARK 0 ORIGINAL DATA REFERENCE 1 \ REMARK 0 AUTH F.BECK,P.UNVERDORBEN,S.BOHN,A.SCHWEITZER,G.PFEIFER,E.SAKATA, \ REMARK 0 AUTH 2 S.NICKELL,J.M.PLITZKO,E.VILLA,W.BAUMEISTER,F.FORSTER \ REMARK 0 TITL NEAR-ATOMIC RESOLUTION STRUCTURAL MODEL OF THE YEAST 26S \ REMARK 0 TITL 2 PROTEASOME. \ REMARK 0 REF PROC.NATL.ACAD.SCI.USA V. 109 14870 2012 \ REMARK 0 REFN ISSN 0027-8424 \ REMARK 0 PMID 22927375 \ REMARK 0 DOI 10.1073/PNAS.1213333109 \ REMARK 2 \ REMARK 2 RESOLUTION. 7.40 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : EMTEGRATOR, IMODFIT, VOLTRAC \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : NULL \ REMARK 3 REFINEMENT SPACE : REAL \ REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT \ REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : METHOD--HYBRID METHOD + FLEXIBLE FITTING \ REMARK 3 REFINEMENT PROTOCOL--HYBRID METHOD DETAILS--INITIAL MODEL WAS \ REMARK 3 DONE WITH AN IN HOUSE HYBRID METHOD (EMTEGRATOR) THAT INTEGRATES \ REMARK 3 TOPOLOGY CONSTRAINTS WITH EM-MAP DERIVED CONSTRAINTS. IMODFIT \ REMARK 3 WAS THEN USED FOR FINAL FLEXIBLE FITTING. \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.400 \ REMARK 3 NUMBER OF PARTICLES : 246469 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL \ REMARK 3 \ REMARK 3 OTHER DETAILS: NULL \ REMARK 4 \ REMARK 4 3J47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-13. \ REMARK 100 THE DEPOSITION ID IS D_1000160229. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : 26S PROTEASOME \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL \ REMARK 245 SAMPLE SUPPORT DETAILS : NULL \ REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL \ REMARK 245 SAMPLE BUFFER : NULL \ REMARK 245 PH : 7.10 \ REMARK 245 SAMPLE DETAILS : NULL \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : 15-MAR-12 \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : NULL \ REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS \ REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F816 (8K X 8K) \ REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 NOMINAL CS : NULL \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 150000 \ REMARK 245 CALIBRATED MAGNIFICATION : NULL \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : NULL \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, U, O, P, Q, R, S, T \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 TYR V 270 \ REMARK 465 VAL V 271 \ REMARK 465 GLY V 272 \ REMARK 465 ARG V 273 \ REMARK 465 GLN V 274 \ REMARK 465 ASP V 275 \ REMARK 465 ASN U 216 \ REMARK 465 LYS U 217 \ REMARK 465 GLU U 218 \ REMARK 465 LEU U 219 \ REMARK 465 PRO U 220 \ REMARK 465 ILE U 221 \ REMARK 465 ASN U 222 \ REMARK 465 LEU U 236 \ REMARK 465 PRO U 237 \ REMARK 465 ASN U 238 \ REMARK 465 LEU U 239 \ REMARK 465 GLY U 240 \ REMARK 465 THR U 241 \ REMARK 465 PRO U 242 \ REMARK 465 ASP U 243 \ REMARK 465 ASP U 244 \ REMARK 465 ASP U 245 \ REMARK 465 GLU U 246 \ REMARK 465 ILE U 247 \ REMARK 465 ASP U 248 \ REMARK 465 VAL U 249 \ REMARK 465 GLU U 250 \ REMARK 465 ASN U 251 \ REMARK 465 HIS U 252 \ REMARK 465 ASP U 253 \ REMARK 465 ARG U 254 \ REMARK 465 ILE U 255 \ REMARK 465 ASN U 256 \ REMARK 465 ILE U 257 \ REMARK 465 SER U 258 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 CG1 VAL Q 416 CD1 LEU R 410 0.52 \ REMARK 500 NZ LYS U 228 C THR P 428 0.55 \ REMARK 500 CG ASP U 289 CD1 LEU Q 419 0.55 \ REMARK 500 OE2 GLU V 258 CD2 LEU Q 415 0.56 \ REMARK 500 CG LEU U 291 CD2 TYR S 475 0.60 \ REMARK 500 NZ LYS V 233 CA GLN U 193 0.67 \ REMARK 500 CD1 LEU V 261 C LEU V 280 0.68 \ REMARK 500 C TYR U 277 CE1 PHE S 461 0.68 \ REMARK 500 CD1 ILE U 296 CG LEU Q 426 0.69 \ REMARK 500 CG LEU U 200 CZ3 TRP O 373 0.71 \ REMARK 500 CD1 LEU U 197 CG1 VAL O 377 0.75 \ REMARK 500 O LEU V 261 CG LEU V 280 0.76 \ REMARK 500 NZ LYS V 277 CD GLU U 293 0.77 \ REMARK 500 OD2 ASP U 289 CD1 LEU Q 419 0.78 \ REMARK 500 O LEU V 261 CD2 LEU V 280 0.78 \ REMARK 500 CG2 VAL Q 416 CD2 LEU R 410 0.78 \ REMARK 500 CD1 LEU V 261 O LEU V 280 0.79 \ REMARK 500 NH2 ARG O 387 SD MET T 264 0.80 \ REMARK 500 CE LYS V 277 OE1 GLU U 293 0.83 \ REMARK 500 CE2 TYR U 277 O PHE S 461 0.86 \ REMARK 500 CD1 LEU R 411 CD2 PHE S 467 0.86 \ REMARK 500 CD1 LEU U 291 CE2 TYR S 475 0.88 \ REMARK 500 NZ LYS V 277 CG GLU U 293 0.90 \ REMARK 500 OE1 GLU V 264 N LEU V 280 0.91 \ REMARK 500 NZ LYS U 268 N LEU P 412 0.91 \ REMARK 500 CE1 TYR Q 409 O LEU R 403 0.94 \ REMARK 500 N TYR V 230 CE LYS U 195 0.95 \ REMARK 500 CG1 VAL Q 423 CG TYR R 417 0.97 \ REMARK 500 CG2 VAL U 232 CD2 HIS P 425 0.98 \ REMARK 500 CA LEU V 261 CD1 LEU V 280 0.98 \ REMARK 500 CG1 VAL Q 423 CD1 TYR R 417 0.99 \ REMARK 500 NZ LYS V 233 N GLN U 193 1.01 \ REMARK 500 NE2 GLN R 415 CE1 PHE S 467 1.01 \ REMARK 500 NH2 ARG V 269 CG1 VAL Q 422 1.01 \ REMARK 500 CG TYR U 277 CD2 PHE S 461 1.02 \ REMARK 500 CG TYR U 277 CG PHE S 461 1.03 \ REMARK 500 CA TYR U 277 CZ PHE S 461 1.03 \ REMARK 500 NZ LYS U 228 N ILE P 429 1.03 \ REMARK 500 CZ TYR U 277 O PHE S 461 1.03 \ REMARK 500 CE LYS V 277 CD GLU U 293 1.04 \ REMARK 500 ND2 ASN Q 420 CD LYS R 413 1.06 \ REMARK 500 NH1 ARG V 269 CA VAL Q 422 1.07 \ REMARK 500 CD GLU V 264 O PRO V 276 1.10 \ REMARK 500 CD2 LEU U 204 ND2 ASN O 374 1.10 \ REMARK 500 CA TYR U 277 CE1 PHE S 461 1.11 \ REMARK 500 CG2 VAL U 232 NE2 HIS P 425 1.12 \ REMARK 500 CD LYS V 233 C ASN U 192 1.15 \ REMARK 500 CE LYS V 233 N GLN U 193 1.15 \ REMARK 500 CG TYR Q 409 CD1 LEU R 403 1.17 \ REMARK 500 O LEU U 291 CZ TYR S 475 1.19 \ REMARK 500 \ REMARK 500 THIS ENTRY HAS 320 CLOSE CONTACTS \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION \ REMARK 500 LEU V 238 C ALA V 239 N 0.162 \ REMARK 500 ALA V 239 N ALA V 239 CA -0.283 \ REMARK 500 PRO V 276 CD PRO V 276 N 0.161 \ REMARK 500 TRP O 373 CE2 TRP O 373 CD2 -0.080 \ REMARK 500 ALA Q 407 N ALA Q 407 CA -0.148 \ REMARK 500 PRO S 457 CD PRO S 457 N 0.221 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: EMD-2165 RELATED DB: EMDB \ REMARK 900 26S YEAST PROTEASOME \ REMARK 900 RELATED ID: 4B4T RELATED DB: PDB \ REMARK 900 26S YEAST PROTEASOME FLEXIBLY FITTED MODEL \ DBREF 3J47 V 230 298 UNP P43588 RPN11_YEAST 230 298 \ DBREF 3J47 U 188 308 UNP Q08723 RPN8_YEAST 188 308 \ DBREF 3J47 O 360 387 UNP Q04062 RPN9_YEAST 360 387 \ DBREF 3J47 P 409 442 UNP Q12250 RPN5_YEAST 409 442 \ DBREF 3J47 Q 407 431 UNP Q12377 RPN6_YEAST 407 431 \ DBREF 3J47 R 397 422 UNP Q06103 RPN7_YEAST 397 422 \ DBREF 3J47 S 455 478 UNP P40016 RPN3_YEAST 455 478 \ DBREF 3J47 T 256 272 UNP P32496 RPN12_YEAST 256 272 \ SEQRES 1 V 69 TYR GLU GLU LYS GLU GLU SER ASN LEU ALA ALA THR LYS \ SEQRES 2 V 69 SER MET VAL LYS ILE ALA GLU GLN TYR SER LYS ARG ILE \ SEQRES 3 V 69 GLU GLU GLU LYS GLU LEU THR GLU GLU GLU LEU LYS THR \ SEQRES 4 V 69 ARG TYR VAL GLY ARG GLN ASP PRO LYS LYS HIS LEU SER \ SEQRES 5 V 69 GLU THR ALA ASP GLU THR LEU GLU ASN ASN ILE VAL SER \ SEQRES 6 V 69 VAL LEU THR ALA \ SEQRES 1 U 121 ILE ARG LEU THR ASN GLN LEU LYS SER LEU LYS GLY LEU \ SEQRES 2 U 121 GLN SER LYS LEU LYS ASP VAL VAL GLU TYR LEU ASP LYS \ SEQRES 3 U 121 VAL ILE ASN LYS GLU LEU PRO ILE ASN HIS THR ILE LEU \ SEQRES 4 U 121 GLY LYS LEU GLN ASP VAL PHE ASN LEU LEU PRO ASN LEU \ SEQRES 5 U 121 GLY THR PRO ASP ASP ASP GLU ILE ASP VAL GLU ASN HIS \ SEQRES 6 U 121 ASP ARG ILE ASN ILE SER ASN ASN LEU GLN LYS ALA LEU \ SEQRES 7 U 121 THR VAL LYS THR ASN ASP GLU LEU MET VAL ILE TYR ILE \ SEQRES 8 U 121 SER ASN LEU VAL ARG SER ILE ILE ALA PHE ASP ASP LEU \ SEQRES 9 U 121 ILE GLU ASN LYS ILE GLN ASN LYS LYS ILE GLN GLU GLN \ SEQRES 10 U 121 ARG VAL LYS ASP \ SEQRES 1 O 28 GLY ASP GLN ILE THR LYS MET LYS ASP ARG LEU VAL GLU \ SEQRES 2 O 28 TRP ASN ASP GLN VAL GLU LYS LEU GLY LYS LYS MET GLU \ SEQRES 3 O 28 ALA ARG \ SEQRES 1 P 34 SER GLN LEU LEU ASN GLU TRP SER HIS ASN VAL ASP GLU \ SEQRES 2 P 34 LEU LEU GLU HIS ILE GLU THR ILE GLY HIS LEU ILE THR \ SEQRES 3 P 34 LYS GLU GLU ILE MET HIS GLY LEU \ SEQRES 1 Q 25 ALA THR TYR ASP SER ALA LEU GLU LEU VAL GLY GLN LEU \ SEQRES 2 Q 25 ASN LYS VAL VAL ASP GLN LEU PHE GLU LYS ALA SER \ SEQRES 1 R 26 ASN ALA GLN TYR HIS LEU LEU VAL LYS GLN GLY ASP GLY \ SEQRES 2 R 26 LEU LEU THR LYS LEU GLN LYS TYR GLY ALA ALA VAL ARG \ SEQRES 1 S 24 GLU ASP PRO GLN GLN VAL PHE ASP GLU ARG ILE LYS PHE \ SEQRES 2 S 24 ALA ASN GLN LEU HIS ASP GLU TYR LEU VAL SER \ SEQRES 1 T 17 LYS THR ASN ILE ILE GLU LYS ALA MET ASP TYR ALA ILE \ SEQRES 2 T 17 SER ILE GLU ASN \ HELIX 1 1 TYR V 230 ARG V 269 1 40 \ HELIX 2 2 LYS V 277 ALA V 298 1 22 \ HELIX 3 3 ARG U 189 ILE U 215 1 27 \ HELIX 4 4 THR U 224 LEU U 235 1 12 \ HELIX 5 5 ASN U 260 ASP U 308 1 49 \ HELIX 6 6 ASP O 361 ARG O 387 1 27 \ HELIX 7 7 GLN P 410 LEU P 442 1 33 \ HELIX 8 8 THR Q 408 SER Q 431 1 24 \ HELIX 9 9 ALA R 398 ARG R 422 1 25 \ HELIX 10 10 ASP S 456 SER S 478 1 23 \ HELIX 11 11 THR T 257 ASN T 272 1 16 \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ TER 510 ALA V 298 \ TER 1253 ASP U 308 \ TER 1486 ARG O 387 \ TER 1766 LEU P 442 \ TER 1959 SER Q 431 \ TER 2163 ARG R 422 \ TER 2370 SER S 478 \ ATOM 2371 N LYS T 256 433.526 187.448 303.989 1.00 0.00 N \ ATOM 2372 CA LYS T 256 433.018 188.635 304.647 1.00 0.00 C \ ATOM 2373 C LYS T 256 433.838 189.851 304.241 1.00 0.00 C \ ATOM 2374 O LYS T 256 433.301 190.812 303.693 1.00 0.00 O \ ATOM 2375 CB LYS T 256 433.093 188.504 306.158 1.00 0.00 C \ ATOM 2376 CG LYS T 256 432.114 187.431 306.621 1.00 0.00 C \ ATOM 2377 CD LYS T 256 432.172 187.308 308.141 1.00 0.00 C \ ATOM 2378 CE LYS T 256 431.201 186.225 308.603 1.00 0.00 C \ ATOM 2379 NZ LYS T 256 431.268 186.099 310.066 1.00 0.00 N \ ATOM 2380 N THR T 257 435.147 189.806 304.510 1.00 0.00 N \ ATOM 2381 CA THR T 257 436.035 190.899 304.172 1.00 0.00 C \ ATOM 2382 C THR T 257 435.998 191.163 302.676 1.00 0.00 C \ ATOM 2383 O THR T 257 435.885 192.307 302.247 1.00 0.00 O \ ATOM 2384 CB THR T 257 437.473 190.580 304.558 1.00 0.00 C \ ATOM 2385 OG1 THR T 257 437.557 190.399 305.973 1.00 0.00 O \ ATOM 2386 CG2 THR T 257 438.376 191.733 304.136 1.00 0.00 C \ ATOM 2387 N ASN T 258 436.091 190.095 301.878 1.00 0.00 N \ ATOM 2388 CA ASN T 258 436.069 190.212 300.433 1.00 0.00 C \ ATOM 2389 C ASN T 258 434.789 190.902 299.985 1.00 0.00 C \ ATOM 2390 O ASN T 258 434.828 191.815 299.162 1.00 0.00 O \ ATOM 2391 CB ASN T 258 436.126 188.846 299.767 1.00 0.00 C \ ATOM 2392 CG ASN T 258 437.518 188.244 299.877 1.00 0.00 C \ ATOM 2393 OD1 ASN T 258 438.489 188.959 300.114 1.00 0.00 O \ ATOM 2394 ND2 ASN T 258 437.615 186.924 299.702 1.00 0.00 N \ ATOM 2395 N ILE T 259 433.654 190.459 300.529 1.00 0.00 N \ ATOM 2396 CA ILE T 259 432.366 191.035 300.187 1.00 0.00 C \ ATOM 2397 C ILE T 259 432.380 192.533 300.428 1.00 0.00 C \ ATOM 2398 O ILE T 259 431.932 193.304 299.583 1.00 0.00 O \ ATOM 2399 CB ILE T 259 431.280 190.408 301.048 1.00 0.00 C \ ATOM 2400 CG1 ILE T 259 431.112 188.943 300.661 1.00 0.00 C \ ATOM 2401 CG2 ILE T 259 429.967 191.149 300.826 1.00 0.00 C \ ATOM 2402 CD1 ILE T 259 430.233 188.244 301.695 1.00 0.00 C \ ATOM 2403 N ILE T 260 432.901 192.946 301.588 1.00 0.00 N \ ATOM 2404 CA ILE T 260 432.973 194.350 301.938 1.00 0.00 C \ ATOM 2405 C ILE T 260 433.775 195.110 300.890 1.00 0.00 C \ ATOM 2406 O ILE T 260 433.354 196.172 300.435 1.00 0.00 O \ ATOM 2407 CB ILE T 260 433.657 194.506 303.286 1.00 0.00 C \ ATOM 2408 CG1 ILE T 260 432.757 193.934 304.378 1.00 0.00 C \ ATOM 2409 CG2 ILE T 260 433.908 195.987 303.560 1.00 0.00 C \ ATOM 2410 CD1 ILE T 260 433.543 193.833 305.682 1.00 0.00 C \ ATOM 2411 N GLU T 261 434.931 194.563 300.510 1.00 0.00 N \ ATOM 2412 CA GLU T 261 435.784 195.188 299.522 1.00 0.00 C \ ATOM 2413 C GLU T 261 435.034 195.350 298.210 1.00 0.00 C \ ATOM 2414 O GLU T 261 435.129 196.390 297.560 1.00 0.00 O \ ATOM 2415 CB GLU T 261 437.024 194.349 299.252 1.00 0.00 C \ ATOM 2416 CG GLU T 261 437.898 195.055 298.246 1.00 0.00 C \ ATOM 2417 CD GLU T 261 439.163 194.233 298.004 1.00 0.00 C \ ATOM 2418 OE1 GLU T 261 439.286 193.160 298.653 1.00 0.00 O \ ATOM 2419 OE2 GLU T 261 439.995 194.686 297.171 1.00 0.00 O \ ATOM 2420 N LYS T 262 434.288 194.314 297.816 1.00 0.00 N \ ATOM 2421 CA LYS T 262 433.522 194.343 296.585 1.00 0.00 C \ ATOM 2422 C LYS T 262 432.549 195.514 296.600 1.00 0.00 C \ ATOM 2423 O LYS T 262 432.445 196.250 295.621 1.00 0.00 O \ ATOM 2424 CB LYS T 262 432.719 193.065 296.402 1.00 0.00 C \ ATOM 2425 CG LYS T 262 431.960 193.129 295.084 1.00 0.00 C \ ATOM 2426 CD LYS T 262 431.213 191.823 294.863 1.00 0.00 C \ ATOM 2427 CE LYS T 262 430.412 191.904 293.569 1.00 0.00 C \ ATOM 2428 NZ LYS T 262 429.674 190.648 293.368 1.00 0.00 N \ ATOM 2429 N ALA T 263 431.837 195.682 297.716 1.00 0.00 N \ ATOM 2430 CA ALA T 263 430.874 196.757 297.856 1.00 0.00 C \ ATOM 2431 C ALA T 263 431.568 198.102 297.691 1.00 0.00 C \ ATOM 2432 O ALA T 263 431.057 198.983 297.000 1.00 0.00 O \ ATOM 2433 CB ALA T 263 430.163 196.687 299.225 1.00 0.00 C \ ATOM 2434 N MET T 264 432.731 198.258 298.322 1.00 0.00 N \ ATOM 2435 CA MET T 264 433.490 199.490 298.242 1.00 0.00 C \ ATOM 2436 C MET T 264 433.764 199.842 296.788 1.00 0.00 C \ ATOM 2437 O MET T 264 433.574 200.984 296.376 1.00 0.00 O \ ATOM 2438 CB MET T 264 434.826 199.364 298.955 1.00 0.00 C \ ATOM 2439 CG MET T 264 434.588 199.280 300.459 1.00 0.00 C \ ATOM 2440 SD MET T 264 436.155 198.998 301.319 1.00 0.00 S \ ATOM 2441 CE MET T 264 436.953 200.563 301.028 1.00 0.00 C \ ATOM 2442 N ASP T 265 434.217 198.854 296.010 1.00 0.00 N \ ATOM 2443 CA ASP T 265 434.520 199.060 294.609 1.00 0.00 C \ ATOM 2444 C ASP T 265 433.258 199.459 293.857 1.00 0.00 C \ ATOM 2445 O ASP T 265 433.255 200.448 293.127 1.00 0.00 O \ ATOM 2446 CB ASP T 265 435.070 197.795 293.970 1.00 0.00 C \ ATOM 2447 CG ASP T 265 436.496 197.560 294.459 1.00 0.00 C \ ATOM 2448 OD1 ASP T 265 437.058 198.509 295.066 1.00 0.00 O \ ATOM 2449 OD2 ASP T 265 437.010 196.435 294.218 1.00 0.00 O \ ATOM 2450 N TYR T 266 432.184 198.683 294.036 1.00 0.00 N \ ATOM 2451 CA TYR T 266 430.923 198.952 293.376 1.00 0.00 C \ ATOM 2452 C TYR T 266 430.474 200.377 293.669 1.00 0.00 C \ ATOM 2453 O TYR T 266 430.064 201.100 292.762 1.00 0.00 O \ ATOM 2454 CB TYR T 266 429.835 198.010 293.860 1.00 0.00 C \ ATOM 2455 CG TYR T 266 428.530 198.363 293.187 1.00 0.00 C \ ATOM 2456 CD1 TYR T 266 428.281 197.940 291.872 1.00 0.00 C \ ATOM 2457 CD2 TYR T 266 427.567 199.113 293.875 1.00 0.00 C \ ATOM 2458 CE1 TYR T 266 427.070 198.267 291.248 1.00 0.00 C \ ATOM 2459 CE2 TYR T 266 426.363 199.441 293.249 1.00 0.00 C \ ATOM 2460 CZ TYR T 266 426.116 199.020 291.935 1.00 0.00 C \ ATOM 2461 OH TYR T 266 424.939 199.337 291.328 1.00 0.00 O \ ATOM 2462 N ALA T 267 430.555 200.780 294.940 1.00 0.00 N \ ATOM 2463 CA ALA T 267 430.161 202.113 295.346 1.00 0.00 C \ ATOM 2464 C ALA T 267 430.979 203.155 294.599 1.00 0.00 C \ ATOM 2465 O ALA T 267 430.424 204.090 294.025 1.00 0.00 O \ ATOM 2466 CB ALA T 267 430.330 202.300 296.870 1.00 0.00 C \ ATOM 2467 N ILE T 268 432.303 202.989 294.607 1.00 0.00 N \ ATOM 2468 CA ILE T 268 433.196 203.912 293.931 1.00 0.00 C \ ATOM 2469 C ILE T 268 432.790 204.058 292.472 1.00 0.00 C \ ATOM 2470 O ILE T 268 432.676 205.174 291.965 1.00 0.00 O \ ATOM 2471 CB ILE T 268 434.620 203.382 293.991 1.00 0.00 C \ ATOM 2472 CG1 ILE T 268 435.115 203.431 295.433 1.00 0.00 C \ ATOM 2473 CG2 ILE T 268 435.519 204.249 293.118 1.00 0.00 C \ ATOM 2474 CD1 ILE T 268 436.423 202.657 295.549 1.00 0.00 C \ ATOM 2475 N SER T 269 432.571 202.929 291.794 1.00 0.00 N \ ATOM 2476 CA SER T 269 432.180 202.933 290.400 1.00 0.00 C \ ATOM 2477 C SER T 269 430.916 203.762 290.212 1.00 0.00 C \ ATOM 2478 O SER T 269 430.846 204.592 289.308 1.00 0.00 O \ ATOM 2479 CB SER T 269 431.893 201.526 289.902 1.00 0.00 C \ ATOM 2480 OG SER T 269 433.108 200.772 289.889 1.00 0.00 O \ ATOM 2481 N ILE T 270 429.922 203.538 291.073 1.00 0.00 N \ ATOM 2482 CA ILE T 270 428.668 204.261 291.001 1.00 0.00 C \ ATOM 2483 C ILE T 270 428.920 205.758 291.131 1.00 0.00 C \ ATOM 2484 O ILE T 270 428.438 206.542 290.320 1.00 0.00 O \ ATOM 2485 CB ILE T 270 427.755 203.817 292.134 1.00 0.00 C \ ATOM 2486 CG1 ILE T 270 427.395 202.348 291.947 1.00 0.00 C \ ATOM 2487 CG2 ILE T 270 426.484 204.658 292.118 1.00 0.00 C \ ATOM 2488 CD1 ILE T 270 426.638 202.172 290.634 1.00 0.00 C \ ATOM 2489 N GLU T 271 429.679 206.148 292.157 1.00 0.00 N \ ATOM 2490 CA GLU T 271 429.993 207.542 292.392 1.00 0.00 C \ ATOM 2491 C GLU T 271 430.598 208.161 291.139 1.00 0.00 C \ ATOM 2492 O GLU T 271 430.156 209.216 290.691 1.00 0.00 O \ ATOM 2493 CB GLU T 271 430.996 207.701 293.525 1.00 0.00 C \ ATOM 2494 CG GLU T 271 431.266 209.169 293.755 1.00 0.00 C \ ATOM 2495 CD GLU T 271 432.244 209.332 294.915 1.00 0.00 C \ ATOM 2496 OE1 GLU T 271 432.641 208.280 295.485 1.00 0.00 O \ ATOM 2497 OE2 GLU T 271 432.581 210.506 295.226 1.00 0.00 O \ ATOM 2498 N ASN T 272 431.611 207.497 290.576 1.00 0.00 N \ ATOM 2499 CA ASN T 272 432.270 207.981 289.380 1.00 0.00 C \ ATOM 2500 C ASN T 272 431.249 208.221 288.278 1.00 0.00 C \ ATOM 2501 O ASN T 272 431.311 209.295 287.684 1.00 0.00 O \ ATOM 2502 CB ASN T 272 433.288 206.973 288.866 1.00 0.00 C \ ATOM 2503 CG ASN T 272 434.496 206.899 289.788 1.00 0.00 C \ ATOM 2504 OD1 ASN T 272 434.778 207.842 290.525 1.00 0.00 O \ ATOM 2505 ND2 ASN T 272 435.213 205.775 289.743 1.00 0.00 N \ TER 2506 ASN T 272 \ MASTER 244 0 0 11 0 0 0 6 2498 8 0 30 \ END \ """, "3j47chainT") cmd.hide("all") cmd.color('grey70', "3j47chainT") cmd.show('cartoon', "3j47chainT") cmd.center("3j47chainT", state=0, origin=1) cmd.zoom("3j47chainT", animate=-1) cmd.select("e3j47T1", "c. T & i. 256-272") cmd.color("red", "e3j47T1") cmd.disable("e3j47T1")