cmd.read_pdbstr("""\ HEADER RIBOSOME 02-JAN-03 1NJM \ TITLE THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM \ TITLE 2 DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC \ TITLE 3 (ASM) AND THE ANTIBIOTIC SPARSOMYCIN \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; \ COMPND 3 CHAIN: 0; \ COMPND 4 MOL_ID: 2; \ COMPND 5 MOLECULE: TRNA ACCEPTOR STEM MIMIC; \ COMPND 6 CHAIN: 5; \ COMPND 7 ENGINEERED: YES; \ COMPND 8 MOL_ID: 3; \ COMPND 9 MOLECULE: 50S RIBOSOMAL PROTEIN L16; \ COMPND 10 CHAIN: K; \ COMPND 11 MOL_ID: 4; \ COMPND 12 MOLECULE: GENERAL STRESS PROTEIN CTC; \ COMPND 13 CHAIN: T \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 3 ORGANISM_TAXID: 1299; \ SOURCE 4 MOL_ID: 2; \ SOURCE 5 SYNTHETIC: YES; \ SOURCE 6 OTHER_DETAILS: THE TERMINAL C OF ASM WAS COUPLED VIA A \ SOURCE 7 PHOSPHODIESTER BOND TO THE 5 OH OF THE N6-DIMETHYL MOIETY OF \ SOURCE 8 PUROMYCIN; \ SOURCE 9 MOL_ID: 3; \ SOURCE 10 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 11 ORGANISM_TAXID: 1299; \ SOURCE 12 MOL_ID: 4; \ SOURCE 13 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 14 ORGANISM_TAXID: 1299 \ KEYWDS RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL-TRANSFERASE, \ KEYWDS 2 PEPTIDE BOND FORMATION, RIBOSOME \ EXPDTA X-RAY DIFFRACTION \ MDLTYP CA ATOMS ONLY, CHAIN K, T \ AUTHOR A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS,R.BERISIO, \ AUTHOR 2 H.BARTELS,H.A.HANSEN,A.YONATH \ REVDAT 3 16-AUG-23 1NJM 1 REMARK LINK \ REVDAT 2 24-FEB-09 1NJM 1 VERSN \ REVDAT 1 11-FEB-03 1NJM 0 \ JRNL AUTH A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, \ JRNL AUTH 2 R.BERISIO,H.BARTELS,F.FRANCESCHI,T.AUERBACH,H.A.HANSEN, \ JRNL AUTH 3 E.KOSSOY,M.KESSLER,A.YONATH \ JRNL TITL STRUCTURAL BASIS OF THE RIBOSOMAL MACHINERY FOR PEPTIDE BOND \ JRNL TITL 2 FORMATION, TRANSLOCATION, AND NASCENT CHAIN PROGRESSION \ JRNL REF MOL.CELL V. 11 91 2003 \ JRNL REFN ISSN 1097-2765 \ JRNL PMID 12535524 \ JRNL DOI 10.1016/S1097-2765(03)00009-1 \ REMARK 2 \ REMARK 2 RESOLUTION. 3.60 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : CNS \ REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- \ REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, \ REMARK 3 : READ,RICE,SIMONSON,WARREN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ENGH & HUBER \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL \ REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL \ REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL \ REMARK 3 NUMBER OF REFLECTIONS : 250710 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING SET) : 0.284 \ REMARK 3 FREE R VALUE : 0.308 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 12535 \ REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : NULL \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL \ REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL \ REMARK 3 BIN R VALUE (WORKING SET) : NULL \ REMARK 3 BIN FREE R VALUE : NULL \ REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL \ REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL \ REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 347 \ REMARK 3 NUCLEIC ACID ATOMS : 59902 \ REMARK 3 HETEROGEN ATOMS : 22 \ REMARK 3 SOLVENT ATOMS : 0 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : NULL \ REMARK 3 B22 (A**2) : NULL \ REMARK 3 B33 (A**2) : NULL \ REMARK 3 B12 (A**2) : NULL \ REMARK 3 B13 (A**2) : NULL \ REMARK 3 B23 (A**2) : NULL \ REMARK 3 \ REMARK 3 ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL \ REMARK 3 ESD FROM SIGMAA (A) : NULL \ REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL \ REMARK 3 \ REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL \ REMARK 3 ESD FROM C-V SIGMAA (A) : NULL \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 BOND LENGTHS (A) : 0.007 \ REMARK 3 BOND ANGLES (DEGREES) : 0.980 \ REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL \ REMARK 3 IMPROPER ANGLES (DEGREES) : NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL MODEL : NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA \ REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELING. \ REMARK 3 METHOD USED : NULL \ REMARK 3 KSOL : NULL \ REMARK 3 BSOL : NULL \ REMARK 3 \ REMARK 3 NCS MODEL : NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT \ REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL \ REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 PARAMETER FILE 1 : NULL \ REMARK 3 TOPOLOGY FILE 1 : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 1NJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-03. \ REMARK 100 THE DEPOSITION ID IS D_1000017925. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 09-NOV-01 \ REMARK 200 TEMPERATURE (KELVIN) : 90 \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : APS \ REMARK 200 BEAMLINE : 19-ID \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 290998 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 \ REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 \ REMARK 200 DATA REDUNDANCY : NULL \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : 0.16900 \ REMARK 200 FOR THE DATA SET : 5.8000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : 0.35600 \ REMARK 200 FOR SHELL : 1.700 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER MAPS \ REMARK 200 SOFTWARE USED: CCP4 \ REMARK 200 STARTING MODEL: PDB ENTRY 1NKW \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 64.00 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, DIMETHYLHEXANEDIOL, MGCL2, \ REMARK 280 KCL, HEPES, NH4CL, SPARSOMYCIN; SOAKING CRYSTALS IN: 0.025MM ASM \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,-Y,Z \ REMARK 290 3555 -X,Y,-Z \ REMARK 290 4555 X,-Y,-Z \ REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 \ REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 \ REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 \ REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 84.80000 \ REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 204.70000 \ REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 347.55000 \ REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 84.80000 \ REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 204.70000 \ REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 347.55000 \ REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 84.80000 \ REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 204.70000 \ REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 347.55000 \ REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 84.80000 \ REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 204.70000 \ REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 347.55000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0, 5, K, T \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 A 0 249 \ REMARK 465 C 0 250 \ REMARK 465 C 0 251 \ REMARK 465 G 0 252 \ REMARK 465 A 0 253 \ REMARK 465 A 0 254 \ REMARK 465 A 0 255 \ REMARK 465 C 0 256 \ REMARK 465 G 0 257 \ REMARK 465 C 0 258 \ REMARK 465 U 0 259 \ REMARK 465 U 0 260 \ REMARK 465 G 0 261 \ REMARK 465 C 0 262 \ REMARK 465 G 0 263 \ REMARK 465 U 0 264 \ REMARK 465 U 0 265 \ REMARK 465 U 0 266 \ REMARK 465 C 0 267 \ REMARK 465 G 0 268 \ REMARK 465 G 0 269 \ REMARK 465 G 0 270 \ REMARK 465 G 0 271 \ REMARK 465 U 0 272 \ REMARK 465 U 0 273 \ REMARK 465 G 0 274 \ REMARK 465 U 0 275 \ REMARK 465 A 0 276 \ REMARK 465 G 0 277 \ REMARK 465 G 0 278 \ REMARK 465 A 0 279 \ REMARK 465 C 0 280 \ REMARK 465 C 0 281 \ REMARK 465 A 0 282 \ REMARK 465 G 0 283 \ REMARK 465 U 0 284 \ REMARK 465 U 0 285 \ REMARK 465 U 0 286 \ REMARK 465 U 0 287 \ REMARK 465 U 0 288 \ REMARK 465 A 0 289 \ REMARK 465 A 0 290 \ REMARK 465 G 0 291 \ REMARK 465 C 0 374 \ REMARK 465 U 0 375 \ REMARK 465 G 0 376 \ REMARK 465 G 0 377 \ REMARK 465 C 0 378 \ REMARK 465 A 0 379 \ REMARK 465 C 0 380 \ REMARK 465 C 0 381 \ REMARK 465 U 0 382 \ REMARK 465 G 0 383 \ REMARK 465 A 0 384 \ REMARK 465 G 0 385 \ REMARK 465 U 0 386 \ REMARK 465 G 0 892 \ REMARK 465 G 0 893 \ REMARK 465 G 0 894 \ REMARK 465 G 0 895 \ REMARK 465 G 0 896 \ REMARK 465 C 0 897 \ REMARK 465 C 0 898 \ REMARK 465 U 0 899 \ REMARK 465 A 0 900 \ REMARK 465 C 0 901 \ REMARK 465 C 0 902 \ REMARK 465 A 0 903 \ REMARK 465 G 0 904 \ REMARK 465 C 0 905 \ REMARK 465 U 0 906 \ REMARK 465 U 0 907 \ REMARK 465 A 0 908 \ REMARK 465 C 0 909 \ REMARK 465 C 0 910 \ REMARK 465 G 0 2098 \ REMARK 465 G 0 2099 \ REMARK 465 A 0 2100 \ REMARK 465 U 0 2101 \ REMARK 465 A 0 2102 \ REMARK 465 C 0 2111 \ REMARK 465 C 0 2112 \ REMARK 465 U 0 2113 \ REMARK 465 G 0 2114 \ REMARK 465 C 0 2115 \ REMARK 465 G 0 2116 \ REMARK 465 U 0 2126 \ REMARK 465 U 0 2127 \ REMARK 465 U 0 2128 \ REMARK 465 U 0 2129 \ REMARK 465 G 0 2130 \ REMARK 465 G 0 2131 \ REMARK 465 A 0 2141 \ REMARK 465 G 0 2142 \ REMARK 465 G 0 2143 \ REMARK 465 C 0 2144 \ REMARK 465 A 0 2145 \ REMARK 465 A 0 2146 \ REMARK 465 C 0 2147 \ REMARK 465 G 0 2148 \ REMARK 465 G 0 2149 \ REMARK 465 U 0 2150 \ REMARK 465 G 0 2151 \ REMARK 465 A 0 2152 \ REMARK 465 A 0 2153 \ REMARK 465 A 0 2154 \ REMARK 465 U 0 2155 \ REMARK 465 A 0 2156 \ REMARK 465 U 0 2775 \ REMARK 465 U 0 2776 \ REMARK 465 A 0 2777 \ REMARK 465 C 0 2878 \ REMARK 465 U 0 2879 \ REMARK 465 C 0 2880 \ REMARK 465 G 5 11 \ REMARK 465 G 5 12 \ REMARK 465 U 5 13 \ REMARK 465 U 5 14 \ REMARK 465 C 5 15 \ REMARK 465 G 5 16 \ REMARK 465 A 5 17 \ REMARK 465 U 5 18 \ REMARK 465 C 5 19 \ REMARK 465 C 5 20 \ REMARK 465 MET K 2 \ REMARK 465 LEU K 3 \ REMARK 465 LEU K 4 \ REMARK 465 PRO K 5 \ REMARK 465 LYS K 6 \ REMARK 465 ARG K 7 \ REMARK 465 MET K 132 \ REMARK 465 VAL K 133 \ REMARK 465 LYS K 134 \ REMARK 465 ARG K 135 \ REMARK 465 GLU K 136 \ REMARK 465 VAL K 137 \ REMARK 465 TYR K 138 \ REMARK 465 ASP K 139 \ REMARK 465 GLU K 140 \ REMARK 465 ALA K 141 \ REMARK 465 GLN K 142 \ REMARK 465 ASP T 224 \ REMARK 465 ASN T 225 \ REMARK 465 ALA T 226 \ REMARK 465 GLY T 227 \ REMARK 465 THR T 228 \ REMARK 465 ASP T 229 \ REMARK 465 SER T 230 \ REMARK 465 GLU T 231 \ REMARK 465 ASP T 232 \ REMARK 465 ASN T 233 \ REMARK 465 SER T 234 \ REMARK 465 ASP T 235 \ REMARK 465 ALA T 236 \ REMARK 465 GLN T 237 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: PLANAR GROUPS \ REMARK 500 \ REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL \ REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE \ REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN \ REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS \ REMARK 500 AN RMSD GREATER THAN THIS VALUE \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 M RES CSSEQI RMS TYPE \ REMARK 500 U 0 873 0.09 SIDE CHAIN \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 610 \ REMARK 610 MISSING HETEROATOM \ REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 610 I=INSERTION CODE): \ REMARK 610 M RES C SSEQI \ REMARK 610 SPS 0 2881 \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPS 0 2881 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 1NJN RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN \ REMARK 900 RELATED ID: 1NJO RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ACCP \ REMARK 900 RELATED ID: 1NJP RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM \ REMARK 900 RELATED ID: 1K01 RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CHLORAMPHENICOL \ REMARK 900 RELATED ID: 1JZX RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN \ REMARK 900 RELATED ID: 1JZY RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN \ REMARK 900 RELATED ID: 1JZZ RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ROXITHROMYCIN \ REMARK 900 RELATED ID: 1K00 RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLARITHROMYCIN \ REMARK 900 RELATED ID: 1NKW RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS \ REMARK 900 RADIODURANS \ DBREF 1NJM 0 1 2880 GB 6460405 AE002087 4635 1756 \ DBREF 1NJM K 2 142 UNP Q9RXJ5 RL16_DEIRA 2 142 \ DBREF 1NJM T 1 237 UNP Q9RX88 RL25_DEIRA 17 253 \ DBREF 1NJM 5 1 35 PDB 1NJM 1NJM 1 35 \ SEQRES 1 0 2880 G G U C A A G A U A G U A \ SEQRES 2 0 2880 A G G G U C C A C G G U G \ SEQRES 3 0 2880 G A U G C C C U G G C G C \ SEQRES 4 0 2880 U G G A G C C G A U G A A \ SEQRES 5 0 2880 G G A C G C G A U U A C C \ SEQRES 6 0 2880 U G C G A A A A G C C C C \ SEQRES 7 0 2880 G A C G A G C U G G A G A \ SEQRES 8 0 2880 U A C G C U U U G A C U C \ SEQRES 9 0 2880 G G G G A U G U C C G A A \ SEQRES 10 0 2880 U G G G G A A A C C C A C \ SEQRES 11 0 2880 C U C G U A A G A G G U A \ SEQRES 12 0 2880 U C C G C A A G G A U G G \ SEQRES 13 0 2880 G A A C U C A G G G A A C \ SEQRES 14 0 2880 U G A A A C A U C U C A G \ SEQRES 15 0 2880 U A C C U G A A G G A G A \ SEQRES 16 0 2880 A G A A A G A G A A U U C \ SEQRES 17 0 2880 G A U U C C G U U A G U A \ SEQRES 18 0 2880 G C G G C G A G C G A A C \ SEQRES 19 0 2880 C C G G A U C A G C C C A \ SEQRES 20 0 2880 A A C C G A A A C G C U U \ SEQRES 21 0 2880 G C G U U U C G G G G U U \ SEQRES 22 0 2880 G U A G G A C C A G U U U \ SEQRES 23 0 2880 U U A A G A U U C A A C C \ SEQRES 24 0 2880 C C U C A A G C C G A A G \ SEQRES 25 0 2880 U G G C U G G A A A G C U \ SEQRES 26 0 2880 A C A C C U C A G A A G G \ SEQRES 27 0 2880 U G A G A G U C C U G U A \ SEQRES 28 0 2880 G G C G A A C G A G C G G \ SEQRES 29 0 2880 U U G A C U G U A C U G G \ SEQRES 30 0 2880 C A C C U G A G U A G G U \ SEQRES 31 0 2880 C G U U G U U C G U G A A \ SEQRES 32 0 2880 A C G A U G A C U G A A U \ SEQRES 33 0 2880 C C G C G C G G A C C A C \ SEQRES 34 0 2880 C G C G C A A G G C U A A \ SEQRES 35 0 2880 A U A C U C C C A G U G A \ SEQRES 36 0 2880 C C G A U A G C G C A U A \ SEQRES 37 0 2880 G U A C C G U G A G G G A \ SEQRES 38 0 2880 A A G G U G A A A A G A A \ SEQRES 39 0 2880 C C C C G G G A G G G G A \ SEQRES 40 0 2880 G U G A A A G A G A A C C \ SEQRES 41 0 2880 U G A A A C C G U G G A C \ SEQRES 42 0 2880 U U A C A A G C A G U C A \ SEQRES 43 0 2880 U G G C A C C U U A U G C \ SEQRES 44 0 2880 G U G U U A U G G C G U G \ SEQRES 45 0 2880 C C U A U U G A A G C A U \ SEQRES 46 0 2880 G A G C C G G C G A C U U \ SEQRES 47 0 2880 A G A C C U G A C G U G C \ SEQRES 48 0 2880 G A G C U U A A G U U G A \ SEQRES 49 0 2880 A A A A C G G A G G C G G \ SEQRES 50 0 2880 A G C G A A A G C G A G U \ SEQRES 51 0 2880 C C G A A U A G G G C G G \ SEQRES 52 0 2880 C A U U A G U A C G U C G \ SEQRES 53 0 2880 G G C U A G A C U C G A A \ SEQRES 54 0 2880 A C C A G G U G A G C U A \ SEQRES 55 0 2880 A G C A U G A C C A G G U \ SEQRES 56 0 2880 U G A A A C C C C C G U G \ SEQRES 57 0 2880 A C A G G G G G C G G A G \ SEQRES 58 0 2880 G A C C G A A C C G G U G \ SEQRES 59 0 2880 C C U G C U G A A A C A G \ SEQRES 60 0 2880 U C U C G G A U G A G U U \ SEQRES 61 0 2880 G U G U U U A G G A G U G \ SEQRES 62 0 2880 A A A A G C U A A C C G A \ SEQRES 63 0 2880 A C C U G G A G A U A G C \ SEQRES 64 0 2880 U A G U U C U C C C C G A \ SEQRES 65 0 2880 A A U G U A U U G A G G U \ SEQRES 66 0 2880 A C A G C C U C G G A U G \ SEQRES 67 0 2880 U U G A C C A U G U C C U \ SEQRES 68 0 2880 G U A G A G C A C U C A C \ SEQRES 69 0 2880 A A G G C U A G G G G G C \ SEQRES 70 0 2880 C U A C C A G C U U A C C \ SEQRES 71 0 2880 A A A C C U U A U G A A A \ SEQRES 72 0 2880 C U C C G A A G G G G C A \ SEQRES 73 0 2880 C G C G U U U A G U C C G \ SEQRES 74 0 2880 G G A G U G A G G C U G C \ SEQRES 75 0 2880 G A G A G C U A A C U U C \ SEQRES 76 0 2880 C G U A G C C G A G A G G \ SEQRES 77 0 2880 G A A A C A A C C C A G A \ SEQRES 78 0 2880 C C A U C A G C U A A G G \ SEQRES 79 0 2880 U C C C U A A A U G A U C \ SEQRES 80 0 2880 G C U C A G U G G U U A A \ SEQRES 81 0 2880 G G A U G U G U C G U C G \ SEQRES 82 0 2880 C A U A G A C A G C C A G \ SEQRES 83 0 2880 G A G G U U G G C U U A G \ SEQRES 84 0 2880 A A G C A G C C A C C C U \ SEQRES 85 0 2880 U C A A A G A G U G C G U \ SEQRES 86 0 2880 A A U A G C U C A C U G G \ SEQRES 87 0 2880 U C G A G U G A C G A U G \ SEQRES 88 0 2880 C G C C G A A A A U G A U \ SEQRES 89 0 2880 C G G G G C U C A A G U G \ SEQRES 90 0 2880 A U C U A C C G A A G C U \ SEQRES 91 0 2880 A U G G A U U C A A C U C \ SEQRES 92 0 2880 G C G A A G C G A G U U G \ SEQRES 93 0 2880 U C U G G U A G G G G A G \ SEQRES 94 0 2880 C G U U C A G U C C G C G \ SEQRES 95 0 2880 G A G A A G C C A U A C C \ SEQRES 96 0 2880 G G A A G G A G U G G U G \ SEQRES 97 0 2880 G A G C C G A C U G A A G \ SEQRES 98 0 2880 U G C G G A U G C C G G C \ SEQRES 99 0 2880 A U G A G U A A C G A U A \ SEQRES 100 0 2880 A A A G A A G U G A G A A \ SEQRES 101 0 2880 U C U U C U U C G C C G U \ SEQRES 102 0 2880 A A G G A C A A G G G U U \ SEQRES 103 0 2880 C C U G G G G A A G G G U \ SEQRES 104 0 2880 C G U C C G C C C A G G G \ SEQRES 105 0 2880 A A A G U C G G G A C C U \ SEQRES 106 0 2880 A A G G U G A G G C C G A \ SEQRES 107 0 2880 A C G G C G C A G C C G A \ SEQRES 108 0 2880 U G G A C A G C A G G U C \ SEQRES 109 0 2880 A A G A U U C C U G C A C \ SEQRES 110 0 2880 C G A U C A U G U G G A G \ SEQRES 111 0 2880 U G A U G G A G G G A C G \ SEQRES 112 0 2880 C A U U A C G C U A U C C \ SEQRES 113 0 2880 A A U G C C A A G C U A U \ SEQRES 114 0 2880 G G C U A U G C U G G U U \ SEQRES 115 0 2880 G G U A C G C U C A A G G \ SEQRES 116 0 2880 G C G A U C G G G U C A G \ SEQRES 117 0 2880 A A A A U C U A C C G G U \ SEQRES 118 0 2880 C A C A U G C C U C A G A \ SEQRES 119 0 2880 C G U A U C G G G A G C U \ SEQRES 120 0 2880 U C C U C G G A A G C G A \ SEQRES 121 0 2880 A G U U G G A A A C G C G \ SEQRES 122 0 2880 A C G G U G C C A A G A A \ SEQRES 123 0 2880 A A G C U U C U A A A C G \ SEQRES 124 0 2880 U U G A A A C A U G A U U \ SEQRES 125 0 2880 G C C C G U A C C G C A A \ SEQRES 126 0 2880 A C C G A C A C A G G U G \ SEQRES 127 0 2880 U C C G A G U G U C A A U \ SEQRES 128 0 2880 G C A C U A A G G C G C G \ SEQRES 129 0 2880 C G A G A G A A C C C U C \ SEQRES 130 0 2880 G U U A A G G A A C U U U \ SEQRES 131 0 2880 G C A A U C U C A C C C C \ SEQRES 132 0 2880 G U A A C U U C G G A A G \ SEQRES 133 0 2880 A A G G G G U C C C C A C \ SEQRES 134 0 2880 G C U U C G C G U G G G G \ SEQRES 135 0 2880 C G C A G U G A A U A G G \ SEQRES 136 0 2880 C C C A G G C G A C U G U \ SEQRES 137 0 2880 U U A C C A A A A U C A C \ SEQRES 138 0 2880 A G C A C U C U G C C A A \ SEQRES 139 0 2880 C A C G A A C A G U G G A \ SEQRES 140 0 2880 C G U A U A G G G U G U G \ SEQRES 141 0 2880 A C G C C U G C C C G G U \ SEQRES 142 0 2880 G C C G G A A G G U C A A \ SEQRES 143 0 2880 G U G G A G C G G U G C A \ SEQRES 144 0 2880 A G C U G C G A A A U G A \ SEQRES 145 0 2880 A G C C C C G G U G A A C \ SEQRES 146 0 2880 G G C G G C C G U A A C U \ SEQRES 147 0 2880 A U A A C G G U C C U A A \ SEQRES 148 0 2880 G G U A G C G A A A U U C \ SEQRES 149 0 2880 C U U G U C G G G U A A G \ SEQRES 150 0 2880 U U C C G A C C U G C A C \ SEQRES 151 0 2880 G A A A G G C G U A A C G \ SEQRES 152 0 2880 A U C U G G G C G C U G U \ SEQRES 153 0 2880 C U C A A C G A G G G A C \ SEQRES 154 0 2880 U C G G U G A A A U U G A \ SEQRES 155 0 2880 A U U G G C U G U A A A G \ SEQRES 156 0 2880 A U G C G G C C U A C C C \ SEQRES 157 0 2880 G U A G C A G G A C G A A \ SEQRES 158 0 2880 A A G A C C C C G U G G A \ SEQRES 159 0 2880 G C U U U A C U A U A G U \ SEQRES 160 0 2880 C U G G C A U U G G G A U \ SEQRES 161 0 2880 U C G G G U U U C U C U G \ SEQRES 162 0 2880 C G U A G G A U A G G U G \ SEQRES 163 0 2880 G G A G C C U G C G A A A \ SEQRES 164 0 2880 C U G G C C U U U U G G G \ SEQRES 165 0 2880 G U C G G U G G A G G C A \ SEQRES 166 0 2880 A C G G U G A A A U A C C \ SEQRES 167 0 2880 A C C C U G A G A A A C U \ SEQRES 168 0 2880 U G G A U U U C U A A C C \ SEQRES 169 0 2880 U G A A A A A U C A C U U \ SEQRES 170 0 2880 U C G G G G A C C G U G C \ SEQRES 171 0 2880 U U G G C G G G U A G U U \ SEQRES 172 0 2880 U G A C U G G G G C G G U \ SEQRES 173 0 2880 C G C C U C C C A A A A U \ SEQRES 174 0 2880 G U A A C G G A G G C G C \ SEQRES 175 0 2880 C C A A A G G U C A C C U \ SEQRES 176 0 2880 C A A G A C G G U U G G A \ SEQRES 177 0 2880 A A U C G U C U G U A G A \ SEQRES 178 0 2880 G C G C A A A G G U A G A \ SEQRES 179 0 2880 A G G U G G C U U G A C U \ SEQRES 180 0 2880 G C G A G A C U G A C A C \ SEQRES 181 0 2880 G U C G A G C A G G G A G \ SEQRES 182 0 2880 G A A A C U C G G G C U U \ SEQRES 183 0 2880 A G U G A A C C G G U G G \ SEQRES 184 0 2880 U A C C G U G U G G A A G \ SEQRES 185 0 2880 G G C C A U C G A U C A A \ SEQRES 186 0 2880 C G G A U A A A A G U U A \ SEQRES 187 0 2880 C C C C G G G G A U A A C \ SEQRES 188 0 2880 A G G C U G A U C U C C C \ SEQRES 189 0 2880 C C G A G A G U C C A U A \ SEQRES 190 0 2880 U C G G C G G G G A G G U \ SEQRES 191 0 2880 U U G G C A C C U C G A U \ SEQRES 192 0 2880 G U C G G C U C G U C G C \ SEQRES 193 0 2880 A U C C U G G G G C U G A \ SEQRES 194 0 2880 A G A A G G U C C C A A G \ SEQRES 195 0 2880 G G U U G G G C U G U U C \ SEQRES 196 0 2880 G C C C A U U A A A G C G \ SEQRES 197 0 2880 G C A C G C G A G C U G G \ SEQRES 198 0 2880 G U U C A G A A C G U C G \ SEQRES 199 0 2880 U G A G A C A G U U C G G \ SEQRES 200 0 2880 U C U C U A U C C G C U A \ SEQRES 201 0 2880 C G G G C G C A G G A G A \ SEQRES 202 0 2880 A U U G A G G G G A G U U \ SEQRES 203 0 2880 G C U C C U A G U A C G A \ SEQRES 204 0 2880 G A G G A C C G G A G U G \ SEQRES 205 0 2880 A A C G G A C C G C U G G \ SEQRES 206 0 2880 U C U C C C U G C U G U C \ SEQRES 207 0 2880 G U A C C A A C G G C A C \ SEQRES 208 0 2880 A U G C A G G G U A G C U \ SEQRES 209 0 2880 A U G U C C G G A A C G G \ SEQRES 210 0 2880 A U A A C C G C U G A A A \ SEQRES 211 0 2880 G C A U C U A A G C G G G \ SEQRES 212 0 2880 A A G C C A G C C C C A A \ SEQRES 213 0 2880 G A U G A G U U C U C C C \ SEQRES 214 0 2880 A C U G U U U A U C A G G \ SEQRES 215 0 2880 U A A G A C U C C C G G A \ SEQRES 216 0 2880 A G A C C A C C G G G U U \ SEQRES 217 0 2880 A A G A G G C C A G G C G \ SEQRES 218 0 2880 U G C A C G C A U A G C A \ SEQRES 219 0 2880 A U G U G U U C A G C G G \ SEQRES 220 0 2880 A C U G G U G C U C A U C \ SEQRES 221 0 2880 A G U C G A G G U C U U G \ SEQRES 222 0 2880 A C C A C U C \ SEQRES 1 5 35 G G G G C U A A G C G G U \ SEQRES 2 5 35 U C G A U C C C G C U U A \ SEQRES 3 5 35 G C U C C A C C PPU \ SEQRES 1 K 141 MET LEU LEU PRO LYS ARG THR LYS PHE ARG LYS GLN PHE \ SEQRES 2 K 141 ARG GLY ARG MET THR GLY ASP ALA LYS GLY GLY ASP TYR \ SEQRES 3 K 141 VAL ALA PHE GLY ASP TYR GLY LEU ILE ALA MET GLU PRO \ SEQRES 4 K 141 ALA TRP ILE LYS SER ASN GLN ILE GLU ALA CYS ARG ILE \ SEQRES 5 K 141 VAL MET SER ARG HIS PHE ARG ARG GLY GLY LYS ILE TYR \ SEQRES 6 K 141 ILE ARG ILE PHE PRO ASP LYS PRO VAL THR LYS LYS PRO \ SEQRES 7 K 141 ALA GLU THR ARG MET GLY LYS GLY LYS GLY ALA VAL GLU \ SEQRES 8 K 141 TYR TRP VAL SER VAL VAL LYS PRO GLY ARG VAL MET PHE \ SEQRES 9 K 141 GLU VAL ALA GLY VAL THR GLU GLU GLN ALA LYS GLU ALA \ SEQRES 10 K 141 PHE ARG LEU ALA GLY HIS LYS LEU PRO ILE GLN THR LYS \ SEQRES 11 K 141 MET VAL LYS ARG GLU VAL TYR ASP GLU ALA GLN \ SEQRES 1 T 237 MET GLU LEU THR ALA LYS PRO ARG THR PRO LYS GLN LYS \ SEQRES 2 T 237 LEU ASP GLU SER MET ILE ALA ALA VAL ALA TYR ASN LYS \ SEQRES 3 T 237 GLU ASN ASN VAL SER PHE ALA LEU ASP ARG LYS ALA PHE \ SEQRES 4 T 237 ASP ARG ALA PHE ARG GLN GLN SER THR THR GLY LEU PHE \ SEQRES 5 T 237 ASP ILE THR VAL GLU GLY GLY GLU THR PHE PRO ALA LEU \ SEQRES 6 T 237 VAL LYS ALA VAL GLN MET ASP LYS ARG LYS ARG ALA PRO \ SEQRES 7 T 237 ILE HIS VAL ASP PHE TYR MET VAL THR TYR GLY GLU PRO \ SEQRES 8 T 237 VAL GLU VAL SER VAL PRO VAL HIS THR THR GLY ARG SER \ SEQRES 9 T 237 GLN GLY GLU VAL GLN GLY GLY LEU VAL ASP ILE VAL VAL \ SEQRES 10 T 237 HIS ASN LEU GLN ILE VAL ALA PRO GLY PRO ARG ARG ILE \ SEQRES 11 T 237 PRO GLN GLU LEU VAL VAL ASP VAL THR LYS MET ASN ILE \ SEQRES 12 T 237 GLY ASP HIS ILE THR ALA GLY ASP ILE LYS LEU PRO GLU \ SEQRES 13 T 237 GLY CYS THR LEU ALA ALA ASP PRO GLU LEU THR VAL VAL \ SEQRES 14 T 237 SER VAL LEU PRO PRO ARG LEU THR ALA GLU GLU LEU GLU \ SEQRES 15 T 237 ALA GLU VAL GLN ALA ALA GLN VAL ALA GLY LEU VAL ALA \ SEQRES 16 T 237 ALA GLY GLU LEU SER GLU GLU ALA ALA GLU ALA VAL LEU \ SEQRES 17 T 237 GLU GLY ASP ALA SER LEU GLU GLU VAL LYS ALA GLU ALA \ SEQRES 18 T 237 SER GLU ASP ASN ALA GLY THR ASP SER GLU ASP ASN SER \ SEQRES 19 T 237 ASP ALA GLN \ MODRES 1NJM PPU 5 35 A PUROMYCIN-5'-MONOPHOSPHATE \ HET PPU 5 35 37 \ HET SPS 02881 22 \ HETNAM PPU PUROMYCIN-5'-MONOPHOSPHATE \ HETNAM SPS SPARSOMYCIN \ FORMUL 2 PPU C22 H30 N7 O8 P \ FORMUL 5 SPS C13 H19 N3 O5 S2 \ LINK O3' C 5 34 P PPU 5 35 1555 1555 1.61 \ SITE 1 AC1 1 A 02581 \ CRYST1 169.600 409.400 695.100 90.00 90.00 90.00 I 2 2 2 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.005896 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.002443 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.001439 0.00000 \ TER 59360 A 02877 \ TER 59904 PPU 5 35 \ TER 60029 LYS K 131 \ ATOM 60030 CA MET T 1 82.847 64.768 54.260 1.00 36.00 C \ ATOM 60031 CA GLU T 2 79.659 63.480 52.600 1.00 36.00 C \ ATOM 60032 CA LEU T 3 76.561 65.364 51.403 1.00 36.00 C \ ATOM 60033 CA THR T 4 73.006 64.001 51.113 1.00 36.00 C \ ATOM 60034 CA ALA T 5 70.539 66.877 50.589 1.00 36.00 C \ ATOM 60035 CA LYS T 6 70.688 70.590 49.695 1.00 36.00 C \ ATOM 60036 CA PRO T 7 68.060 73.207 50.604 1.00 36.00 C \ ATOM 60037 CA ARG T 8 67.596 76.911 49.807 1.00 36.00 C \ ATOM 60038 CA THR T 9 65.212 77.552 52.740 1.00 36.00 C \ ATOM 60039 CA PRO T 10 66.236 78.899 56.172 1.00 36.00 C \ ATOM 60040 CA LYS T 11 63.911 76.572 58.129 1.00 36.00 C \ ATOM 60041 CA GLN T 12 65.232 73.382 56.482 1.00 36.00 C \ ATOM 60042 CA LYS T 13 68.878 74.435 57.020 1.00 36.00 C \ ATOM 60043 CA LEU T 14 68.856 74.313 60.840 1.00 36.00 C \ ATOM 60044 CA ASP T 15 67.022 71.606 62.810 1.00 36.00 C \ ATOM 60045 CA GLU T 16 69.312 70.029 65.437 1.00 36.00 C \ ATOM 60046 CA SER T 17 72.904 69.569 64.205 1.00 36.00 C \ ATOM 60047 CA MET T 18 72.740 70.695 60.547 1.00 36.00 C \ ATOM 60048 CA ILE T 19 74.376 73.943 59.374 1.00 36.00 C \ ATOM 60049 CA ALA T 20 74.218 76.056 56.193 1.00 36.00 C \ ATOM 60050 CA ALA T 21 77.123 76.388 53.730 1.00 36.00 C \ ATOM 60051 CA VAL T 22 77.771 77.884 50.264 1.00 36.00 C \ ATOM 60052 CA ALA T 23 80.389 77.536 47.499 1.00 36.00 C \ ATOM 60053 CA TYR T 24 81.510 80.302 45.123 1.00 36.00 C \ ATOM 60054 CA ASN T 25 83.087 79.461 41.742 1.00 36.00 C \ ATOM 60055 CA LYS T 26 83.228 80.613 38.095 1.00 36.00 C \ ATOM 60056 CA GLU T 27 80.126 79.850 35.946 1.00 36.00 C \ ATOM 60057 CA ASN T 28 78.723 77.568 38.695 1.00 36.00 C \ ATOM 60058 CA ASN T 29 76.934 78.432 41.961 1.00 36.00 C \ ATOM 60059 CA VAL T 30 75.198 75.968 44.311 1.00 36.00 C \ ATOM 60060 CA SER T 31 74.362 75.612 48.020 1.00 36.00 C \ ATOM 60061 CA PHE T 32 75.652 72.819 50.283 1.00 36.00 C \ ATOM 60062 CA ALA T 33 74.715 71.286 53.654 1.00 36.00 C \ ATOM 60063 CA LEU T 34 77.105 69.938 56.319 1.00 36.00 C \ ATOM 60064 CA ASP T 35 76.993 68.770 59.962 1.00 36.00 C \ ATOM 60065 CA ARG T 36 78.416 70.746 62.917 1.00 36.00 C \ ATOM 60066 CA LYS T 37 79.684 67.598 64.693 1.00 36.00 C \ ATOM 60067 CA ALA T 38 81.705 66.336 61.701 1.00 36.00 C \ ATOM 60068 CA PHE T 39 83.172 69.772 60.870 1.00 36.00 C \ ATOM 60069 CA ASP T 40 84.452 70.243 64.450 1.00 36.00 C \ ATOM 60070 CA ARG T 41 86.960 67.361 64.299 1.00 36.00 C \ ATOM 60071 CA ALA T 42 88.123 68.146 60.738 1.00 36.00 C \ ATOM 60072 CA PHE T 43 88.919 71.788 61.613 1.00 36.00 C \ ATOM 60073 CA ARG T 44 91.428 70.755 64.316 1.00 36.00 C \ ATOM 60074 CA GLN T 45 93.750 68.795 61.985 1.00 36.00 C \ ATOM 60075 CA GLN T 46 93.514 71.005 58.876 1.00 36.00 C \ ATOM 60076 CA SER T 47 92.609 74.708 58.740 1.00 36.00 C \ ATOM 60077 CA THR T 48 93.298 75.784 55.127 1.00 36.00 C \ ATOM 60078 CA THR T 49 96.557 74.022 54.137 1.00 36.00 C \ ATOM 60079 CA GLY T 50 95.150 70.486 53.983 1.00 36.00 C \ ATOM 60080 CA LEU T 51 92.608 69.794 51.231 1.00 36.00 C \ ATOM 60081 CA PHE T 52 89.931 67.107 51.639 1.00 36.00 C \ ATOM 60082 CA ASP T 53 87.788 65.368 49.000 1.00 36.00 C \ ATOM 60083 CA ILE T 54 84.005 65.839 49.213 1.00 36.00 C \ ATOM 60084 CA THR T 55 81.584 63.156 47.983 1.00 36.00 C \ ATOM 60085 CA VAL T 56 78.233 63.968 46.349 1.00 36.00 C \ ATOM 60086 CA GLU T 57 75.086 61.811 46.095 1.00 36.00 C \ ATOM 60087 CA GLY T 58 75.267 60.676 42.464 1.00 36.00 C \ ATOM 60088 CA GLY T 59 77.650 63.000 40.633 1.00 36.00 C \ ATOM 60089 CA GLU T 60 81.199 64.371 40.424 1.00 36.00 C \ ATOM 60090 CA THR T 61 83.670 64.852 43.297 1.00 36.00 C \ ATOM 60091 CA PHE T 62 85.672 68.062 43.846 1.00 36.00 C \ ATOM 60092 CA PRO T 63 87.955 69.454 46.576 1.00 36.00 C \ ATOM 60093 CA ALA T 64 87.151 72.750 48.331 1.00 36.00 C \ ATOM 60094 CA LEU T 65 89.128 74.772 50.896 1.00 36.00 C \ ATOM 60095 CA VAL T 66 88.073 77.556 53.292 1.00 36.00 C \ ATOM 60096 CA LYS T 67 89.408 81.072 52.632 1.00 36.00 C \ ATOM 60097 CA ALA T 68 87.058 83.341 54.614 1.00 36.00 C \ ATOM 60098 CA VAL T 69 85.666 82.407 58.043 1.00 36.00 C \ ATOM 60099 CA GLN T 70 82.950 84.184 60.051 1.00 36.00 C \ ATOM 60100 CA MET T 71 82.724 83.990 63.858 1.00 36.00 C \ ATOM 60101 CA ASP T 72 79.700 84.335 66.174 1.00 36.00 C \ ATOM 60102 CA LYS T 73 78.880 87.111 68.673 1.00 36.00 C \ ATOM 60103 CA ARG T 74 77.984 84.728 71.530 1.00 36.00 C \ ATOM 60104 CA LYS T 75 79.434 81.218 71.072 1.00 36.00 C \ ATOM 60105 CA ARG T 76 82.888 79.979 69.977 1.00 36.00 C \ ATOM 60106 CA ALA T 77 81.392 78.049 67.021 1.00 36.00 C \ ATOM 60107 CA PRO T 78 81.529 79.404 63.450 1.00 36.00 C \ ATOM 60108 CA ILE T 79 78.331 80.278 61.554 1.00 36.00 C \ ATOM 60109 CA HIS T 80 78.160 80.089 57.717 1.00 36.00 C \ ATOM 60110 CA VAL T 81 81.407 79.018 56.012 1.00 36.00 C \ ATOM 60111 CA ASP T 82 82.429 80.065 52.486 1.00 36.00 C \ ATOM 60112 CA PHE T 83 84.152 77.545 50.195 1.00 36.00 C \ ATOM 60113 CA TYR T 84 86.511 78.348 47.302 1.00 36.00 C \ ATOM 60114 CA MET T 85 85.888 74.251 43.622 1.00 36.00 C \ ATOM 60115 CA VAL T 86 89.335 73.892 42.020 1.00 36.00 C \ ATOM 60116 CA THR T 87 89.814 72.883 38.366 1.00 36.00 C \ ATOM 60117 CA TYR T 88 92.652 75.070 37.035 1.00 36.00 C \ ATOM 60118 CA GLY T 89 96.284 75.230 38.168 1.00 36.00 C \ ATOM 60119 CA GLU T 90 96.215 78.855 39.366 1.00 36.00 C \ ATOM 60120 CA PRO T 91 95.299 80.306 42.779 1.00 36.00 C \ ATOM 60121 CA VAL T 92 94.178 83.846 43.672 1.00 36.00 C \ ATOM 60122 CA GLU T 93 94.723 84.119 47.451 1.00 36.00 C \ ATOM 60123 CA VAL T 94 95.857 81.588 50.077 1.00 36.00 C \ ATOM 60124 CA SER T 95 96.486 82.053 53.815 1.00 36.00 C \ ATOM 60125 CA VAL T 96 99.433 80.208 55.392 1.00 36.00 C \ ATOM 60126 CA PRO T 97 100.027 79.822 59.147 1.00 36.00 C \ ATOM 60127 CA VAL T 98 103.498 80.324 60.659 1.00 36.00 C \ ATOM 60128 CA HIS T 99 104.783 77.814 63.233 1.00 36.00 C \ ATOM 60129 CA THR T 100 107.833 78.223 65.491 1.00 36.00 C \ ATOM 60130 CA THR T 101 110.060 75.235 66.310 1.00 36.00 C \ ATOM 60131 CA GLY T 102 113.202 75.367 68.456 1.00 36.00 C \ ATOM 60132 CA ARG T 103 114.459 77.571 71.306 1.00 36.00 C \ ATOM 60133 CA SER T 104 116.425 80.806 70.792 1.00 36.00 C \ ATOM 60134 CA GLN T 105 119.847 81.566 72.326 1.00 36.00 C \ ATOM 60135 CA GLY T 106 119.004 85.183 73.175 1.00 36.00 C \ ATOM 60136 CA GLU T 107 115.667 84.332 74.824 1.00 36.00 C \ ATOM 60137 CA VAL T 108 117.083 82.451 77.836 1.00 36.00 C \ ATOM 60138 CA GLN T 109 120.014 84.894 78.149 1.00 36.00 C \ ATOM 60139 CA GLY T 110 117.953 87.524 79.993 1.00 36.00 C \ ATOM 60140 CA GLY T 111 114.552 88.041 78.391 1.00 36.00 C \ ATOM 60141 CA LEU T 112 111.224 86.446 77.445 1.00 36.00 C \ ATOM 60142 CA VAL T 113 109.334 84.807 74.539 1.00 36.00 C \ ATOM 60143 CA ASP T 114 108.930 86.478 71.121 1.00 36.00 C \ ATOM 60144 CA ILE T 115 105.510 87.877 70.158 1.00 36.00 C \ ATOM 60145 CA VAL T 116 104.132 87.813 66.598 1.00 36.00 C \ ATOM 60146 CA VAL T 117 102.254 90.709 64.959 1.00 36.00 C \ ATOM 60147 CA HIS T 118 100.582 88.681 62.185 1.00 36.00 C \ ATOM 60148 CA ASN T 119 99.913 84.924 62.037 1.00 36.00 C \ ATOM 60149 CA LEU T 120 98.372 84.718 58.547 1.00 36.00 C \ ATOM 60150 CA GLN T 121 100.447 85.921 55.575 1.00 36.00 C \ ATOM 60151 CA ILE T 122 99.678 86.298 51.852 1.00 36.00 C \ ATOM 60152 CA VAL T 123 101.509 83.868 49.540 1.00 36.00 C \ ATOM 60153 CA ALA T 124 100.967 82.710 45.940 1.00 36.00 C \ ATOM 60154 CA PRO T 125 100.825 79.016 44.978 1.00 36.00 C \ ATOM 60155 CA GLY T 126 102.184 77.232 41.899 1.00 36.00 C \ ATOM 60156 CA PRO T 127 100.458 74.251 40.268 1.00 36.00 C \ ATOM 60157 CA ARG T 128 98.001 72.589 42.723 1.00 36.00 C \ ATOM 60158 CA ARG T 129 100.678 72.490 45.471 1.00 36.00 C \ ATOM 60159 CA ILE T 130 100.569 74.394 48.781 1.00 36.00 C \ ATOM 60160 CA PRO T 131 102.983 74.681 51.732 1.00 36.00 C \ ATOM 60161 CA GLN T 132 101.916 73.634 55.246 1.00 36.00 C \ ATOM 60162 CA GLU T 133 105.047 74.237 57.350 1.00 36.00 C \ ATOM 60163 CA LEU T 134 107.499 77.119 56.841 1.00 36.00 C \ ATOM 60164 CA VAL T 135 110.685 78.058 58.725 1.00 36.00 C \ ATOM 60165 CA VAL T 136 111.177 81.668 59.867 1.00 36.00 C \ ATOM 60166 CA ASP T 137 113.624 81.506 62.797 1.00 36.00 C \ ATOM 60167 CA VAL T 138 116.928 79.594 62.712 1.00 36.00 C \ ATOM 60168 CA THR T 139 119.723 81.443 64.562 1.00 36.00 C \ ATOM 60169 CA LYS T 140 120.439 84.732 66.421 1.00 36.00 C \ ATOM 60170 CA MET T 141 117.640 86.603 68.237 1.00 36.00 C \ ATOM 60171 CA ASN T 142 119.028 89.347 70.507 1.00 36.00 C \ ATOM 60172 CA ILE T 143 117.964 92.895 71.488 1.00 36.00 C \ ATOM 60173 CA GLY T 144 118.081 95.342 68.578 1.00 36.00 C \ ATOM 60174 CA ASP T 145 117.844 92.764 65.776 1.00 36.00 C \ ATOM 60175 CA HIS T 146 114.594 91.936 63.947 1.00 36.00 C \ ATOM 60176 CA ILE T 147 113.477 89.324 61.394 1.00 36.00 C \ ATOM 60177 CA THR T 148 112.321 90.478 57.939 1.00 36.00 C \ ATOM 60178 CA ALA T 149 110.017 88.937 55.297 1.00 36.00 C \ ATOM 60179 CA GLY T 150 112.793 88.672 52.695 1.00 36.00 C \ ATOM 60180 CA ASP T 151 114.961 86.442 54.912 1.00 36.00 C \ ATOM 60181 CA ILE T 152 112.490 83.516 54.789 1.00 36.00 C \ ATOM 60182 CA LYS T 153 112.898 80.581 52.375 1.00 36.00 C \ ATOM 60183 CA LEU T 154 110.394 79.296 49.791 1.00 36.00 C \ ATOM 60184 CA PRO T 155 110.135 75.949 47.963 1.00 36.00 C \ ATOM 60185 CA GLU T 156 107.786 76.631 45.018 1.00 36.00 C \ ATOM 60186 CA GLY T 157 105.990 79.741 43.767 1.00 36.00 C \ ATOM 60187 CA CYS T 158 107.405 83.278 43.932 1.00 36.00 C \ ATOM 60188 CA THR T 159 105.575 86.034 45.838 1.00 36.00 C \ ATOM 60189 CA LEU T 160 105.419 89.655 44.632 1.00 36.00 C \ ATOM 60190 CA ALA T 161 102.575 90.940 46.849 1.00 36.00 C \ ATOM 60191 CA ALA T 162 104.650 90.872 50.066 1.00 36.00 C \ ATOM 60192 CA ASP T 163 106.929 93.768 51.079 1.00 36.00 C \ ATOM 60193 CA PRO T 164 110.566 93.534 52.236 1.00 36.00 C \ ATOM 60194 CA GLU T 165 110.133 96.345 54.801 1.00 36.00 C \ ATOM 60195 CA LEU T 166 107.395 94.479 56.721 1.00 36.00 C \ ATOM 60196 CA THR T 167 108.254 92.226 59.682 1.00 36.00 C \ ATOM 60197 CA VAL T 168 106.450 89.063 60.836 1.00 36.00 C \ ATOM 60198 CA VAL T 169 108.376 88.197 64.020 1.00 36.00 C \ ATOM 60199 CA SER T 170 109.903 90.797 66.362 1.00 36.00 C \ ATOM 60200 CA VAL T 171 111.847 90.416 69.623 1.00 36.00 C \ ATOM 60201 CA LEU T 172 110.953 92.681 72.562 1.00 36.00 C \ ATOM 60202 CA PRO T 173 113.153 93.699 75.516 1.00 36.00 C \ ATOM 60203 CA PRO T 174 112.427 95.264 78.950 1.00 36.00 C \ ATOM 60204 CA ARG T 175 110.017 98.203 79.392 1.00 36.00 C \ ATOM 60205 CA LEU T 176 111.901 100.063 82.152 1.00 36.00 C \ ATOM 60206 CA THR T 177 115.574 98.987 82.346 1.00 36.00 C \ ATOM 60207 CA ALA T 178 116.582 95.405 83.289 1.00 36.00 C \ ATOM 60208 CA GLU T 179 115.853 94.594 86.953 1.00 36.00 C \ ATOM 60209 CA GLU T 180 113.473 97.467 87.801 1.00 36.00 C \ ATOM 60210 CA LEU T 181 110.443 95.115 87.964 1.00 34.13 C \ ATOM 60211 CA GLU T 182 111.460 93.703 91.380 1.00 34.13 C \ ATOM 60212 CA ALA T 183 111.731 97.203 92.909 1.00 34.13 C \ ATOM 60213 CA GLU T 184 108.174 98.214 91.919 1.00 34.13 C \ ATOM 60214 CA VAL T 185 106.650 95.024 93.385 1.00 34.13 C \ ATOM 60215 CA GLN T 186 108.296 95.441 96.817 1.00 34.13 C \ ATOM 60216 CA ALA T 187 106.965 99.005 97.192 1.00 34.13 C \ ATOM 60217 CA ALA T 188 103.379 97.939 96.396 1.00 34.13 C \ ATOM 60218 CA GLN T 189 103.438 95.044 98.900 1.00 34.13 C \ ATOM 60219 CA VAL T 190 104.505 97.281 101.812 1.00 34.13 C \ ATOM 60220 CA ALA T 191 101.968 100.041 101.041 1.00 34.13 C \ ATOM 60221 CA GLY T 192 98.999 97.671 100.724 1.00 34.13 C \ ATOM 60222 CA LEU T 193 99.297 96.107 104.197 1.00 34.13 C \ ATOM 60223 CA VAL T 194 99.538 99.561 105.825 1.00 34.13 C \ ATOM 60224 CA ALA T 195 96.399 100.827 104.044 1.00 34.13 C \ ATOM 60225 CA ALA T 196 94.436 97.696 105.045 1.00 34.13 C \ ATOM 60226 CA GLY T 197 93.789 98.972 108.575 1.00 34.13 C \ ATOM 60227 CA GLU T 198 95.468 101.690 110.644 1.00 34.13 C \ ATOM 60228 CA LEU T 199 99.207 101.391 109.767 1.00 34.13 C \ ATOM 60229 CA SER T 200 101.307 98.226 110.230 1.00 34.13 C \ ATOM 60230 CA GLU T 201 104.286 100.183 111.614 1.00 34.13 C \ ATOM 60231 CA GLU T 202 102.232 102.145 114.184 1.00 34.13 C \ ATOM 60232 CA ALA T 203 99.848 99.433 115.476 1.00 34.13 C \ ATOM 60233 CA ALA T 204 102.456 97.997 117.878 1.00 34.13 C \ ATOM 60234 CA GLU T 205 103.164 101.350 119.583 1.00 34.13 C \ ATOM 60235 CA ALA T 206 99.516 102.452 119.915 1.00 34.13 C \ ATOM 60236 CA VAL T 207 97.886 99.330 121.416 1.00 34.13 C \ ATOM 60237 CA LEU T 208 100.354 97.920 123.981 1.00 34.13 C \ ATOM 60238 CA GLU T 209 103.975 99.060 124.450 1.00 34.13 C \ ATOM 60239 CA GLY T 210 103.958 101.853 127.032 1.00 34.13 C \ ATOM 60240 CA ASP T 211 101.885 104.427 128.923 1.00 34.13 C \ ATOM 60241 CA ALA T 212 103.241 107.699 127.477 1.00 34.13 C \ ATOM 60242 CA SER T 213 102.132 106.891 123.896 1.00 34.13 C \ ATOM 60243 CA LEU T 214 99.009 108.546 122.455 1.00 34.13 C \ ATOM 60244 CA GLU T 215 98.445 107.361 118.860 1.00 34.13 C \ ATOM 60245 CA GLU T 216 101.175 108.147 116.296 1.00 34.13 C \ ATOM 60246 CA VAL T 217 104.917 107.805 116.987 1.00 34.13 C \ ATOM 60247 CA LYS T 218 106.639 105.982 114.099 1.00 34.13 C \ ATOM 60248 CA ALA T 219 104.198 106.855 111.289 1.00 34.13 C \ ATOM 60249 CA GLU T 220 105.650 107.757 107.843 1.00 34.13 C \ ATOM 60250 CA ALA T 221 109.330 107.577 108.881 1.00 34.13 C \ ATOM 60251 CA SER T 222 112.324 106.697 106.694 1.00 34.13 C \ ATOM 60252 CA GLU T 223 114.617 103.775 107.570 1.00 34.13 C \ TER 60253 GLU T 223 \ CONECT5985559867 \ CONECT5986759855598685986959883 \ CONECT5986859867 \ CONECT5986959867 \ CONECT5987059871 \ CONECT59871598705987259874 \ CONECT59872598715987359888 \ CONECT5987359872 \ CONECT598745987159875 \ CONECT59875598745987659877 \ CONECT598765987559878 \ CONECT598775987559879 \ CONECT598785987659880 \ CONECT598795987759880 \ CONECT59880598785987959881 \ CONECT598815988059882 \ CONECT5988259881 \ CONECT598835986759884 \ CONECT598845988359885 \ CONECT59885598845988659887 \ CONECT598865988559891 \ CONECT59887598855988859889 \ CONECT598885987259887 \ CONECT59889598875989059891 \ CONECT5989059889 \ CONECT59891598865988959892 \ CONECT59892598915989359902 \ CONECT598935989259894 \ CONECT598945989359895 \ CONECT59895598945989659902 \ CONECT59896598955989759900 \ CONECT59897598965989859899 \ CONECT5989859897 \ CONECT5989959897 \ CONECT599005989659901 \ CONECT599015990059903 \ CONECT59902598925989559903 \ CONECT599035990159902 \ CONECT60254602556025660262 \ CONECT6025560254 \ CONECT602566025460257 \ CONECT60257602566025860259 \ CONECT6025860257 \ CONECT602596025760260 \ CONECT60260602596026160262 \ CONECT6026160260 \ CONECT60262602546026060263 \ CONECT602636026260264 \ CONECT602646026360265 \ CONECT60265602646026660267 \ CONECT6026660265 \ CONECT602676026560268 \ CONECT60268602676026960271 \ CONECT602696026860270 \ CONECT6027060269 \ CONECT602716026860272 \ CONECT602726027160273 \ CONECT602736027260274 \ CONECT602746027360275 \ CONECT6027560274 \ MASTER 435 0 2 0 0 0 1 660271 4 60 255 \ END \ """, "chainT") cmd.hide("all") cmd.color('grey70', "chainT") cmd.show('ribbon', "chainT") cmd.select("e1njmT1", "c. T & i. 1-88") cmd.center("e1njmT1", state=0, origin=1) cmd.zoom("e1njmT1", animate=-1) cmd.show_as('cartoon', "e1njmT1") cmd.spectrum('count', 'rainbow', "e1njmT1") cmd.disable("e1njmT1")