cmd.read_pdbstr("""\ HEADER RIBOSOME 27-FEB-03 1OND \ TITLE THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM \ TITLE 2 DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE \ TITLE 3 ANTIBIOTIC \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; \ COMPND 3 CHAIN: 0; \ COMPND 4 MOL_ID: 2; \ COMPND 5 MOLECULE: 50S RIBOSOMAL PROTEIN L22; \ COMPND 6 CHAIN: Q; \ COMPND 7 MOL_ID: 3; \ COMPND 8 MOLECULE: 50S RIBOSOMAL PROTEIN L32; \ COMPND 9 CHAIN: Z \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 3 ORGANISM_TAXID: 1299; \ SOURCE 4 MOL_ID: 2; \ SOURCE 5 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 6 ORGANISM_TAXID: 1299; \ SOURCE 7 MOL_ID: 3; \ SOURCE 8 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; \ SOURCE 9 ORGANISM_TAXID: 1299 \ KEYWDS RIBOSOMES, TRNA, MACROLIDE, ANTIBIOTIC, EXIT-TUNNEL L22, BLOCKAGE, \ KEYWDS 2 RIBOSOME \ EXPDTA X-RAY DIFFRACTION \ MDLTYP CA ATOMS ONLY, CHAIN Q, Z \ AUTHOR R.BERISIO,F.SCHLUENZEN,J.HARMS,A.BASHAN,T.AUERBACH,D.BARAM,A.YONATH \ REVDAT 5 16-AUG-23 1OND 1 REMARK \ REVDAT 4 24-FEB-09 1OND 1 VERSN \ REVDAT 3 13-JAN-04 1OND 1 REMARK \ REVDAT 2 29-APR-03 1OND 1 JRNL \ REVDAT 1 15-APR-03 1OND 0 \ JRNL AUTH R.BERISIO,F.SCHLUENZEN,J.HARMS,A.BASHAN,T.AUERBACH,D.BARAM, \ JRNL AUTH 2 A.YONATH \ JRNL TITL STRUCTURAL INSIGHT INTO THE ROLE OF THE RIBOSOMAL TUNNEL IN \ JRNL TITL 2 CELLULAR REGULATION \ JRNL REF NAT.STRUCT.BIOL. V. 10 366 2003 \ JRNL REFN ISSN 1072-8368 \ JRNL PMID 12665853 \ JRNL DOI 10.1038/NSB915 \ REMARK 1 \ REMARK 1 REFERENCE 1 \ REMARK 1 AUTH F.SCHLUNZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ,R.ALBRECHT, \ REMARK 1 AUTH 2 A.YONATH,F.FRANCESCHI \ REMARK 1 TITL STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE \ REMARK 1 TITL 2 PEPTIDYL TRANSFERASE CENTRE IN EUBACTERIA \ REMARK 1 REF NATURE V. 413 814 2001 \ REMARK 1 REFN ISSN 0028-0836 \ REMARK 1 DOI 10.1038/35101544 \ REMARK 2 \ REMARK 2 RESOLUTION. 3.40 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : CNS \ REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- \ REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, \ REMARK 3 : READ,RICE,SIMONSON,WARREN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ENGH & HUBER \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 \ REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL \ REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL \ REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL \ REMARK 3 NUMBER OF REFLECTIONS : 217346 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING SET) : 0.261 \ REMARK 3 FREE R VALUE : 0.310 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 10833 \ REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : NULL \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 8.00 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL \ REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL \ REMARK 3 BIN R VALUE (WORKING SET) : NULL \ REMARK 3 BIN FREE R VALUE : NULL \ REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL \ REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL \ REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 188 \ REMARK 3 NUCLEIC ACID ATOMS : 59336 \ REMARK 3 HETEROGEN ATOMS : 57 \ REMARK 3 SOLVENT ATOMS : 0 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 41.00 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : NULL \ REMARK 3 B22 (A**2) : NULL \ REMARK 3 B33 (A**2) : NULL \ REMARK 3 B12 (A**2) : NULL \ REMARK 3 B13 (A**2) : NULL \ REMARK 3 B23 (A**2) : NULL \ REMARK 3 \ REMARK 3 ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.04 \ REMARK 3 ESD FROM SIGMAA (A) : 0.40 \ REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 \ REMARK 3 \ REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.05 \ REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 BOND LENGTHS (A) : 0.007 \ REMARK 3 BOND ANGLES (DEGREES) : 1.310 \ REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL \ REMARK 3 IMPROPER ANGLES (DEGREES) : NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL MODEL : NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA \ REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELING. \ REMARK 3 METHOD USED : NULL \ REMARK 3 KSOL : NULL \ REMARK 3 BSOL : NULL \ REMARK 3 \ REMARK 3 NCS MODEL : NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT \ REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL \ REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 PARAMETER FILE 1 : NULL \ REMARK 3 TOPOLOGY FILE 1 : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: THE PROTEIN CHAINS CONTAIN CA ONLY. \ REMARK 4 \ REMARK 4 1OND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-03. \ REMARK 100 THE DEPOSITION ID IS D_1000018468. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 15-APR-02; NULL \ REMARK 200 TEMPERATURE (KELVIN) : 100.0; NULL \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 2 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y; Y \ REMARK 200 RADIATION SOURCE : APS; ESRF \ REMARK 200 BEAMLINE : 19-ID; ID29 \ REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.033; 1.038 \ REMARK 200 MONOCHROMATOR : SI111 OR SI311; NULL \ REMARK 200 OPTICS : NULL; NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD; NULL \ REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 291247 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 \ REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 \ REMARK 200 DATA REDUNDANCY : 2.400 \ REMARK 200 R MERGE (I) : 0.09900 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 5.4000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 \ REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 \ REMARK 200 R MERGE FOR SHELL (I) : 0.43200 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 1.400 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: CCP4 \ REMARK 200 STARTING MODEL: PDB ENTRY 1NKW \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 64.00 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: EVAPORATION \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,-Y,Z \ REMARK 290 3555 -X,Y,-Z \ REMARK 290 4555 X,-Y,-Z \ REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 \ REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 \ REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 \ REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 85.12500 \ REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 205.54500 \ REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 347.67000 \ REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 85.12500 \ REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 205.54500 \ REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 347.67000 \ REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 85.12500 \ REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 205.54500 \ REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 347.67000 \ REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 85.12500 \ REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 205.54500 \ REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 347.67000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0, Q, Z \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 400 \ REMARK 400 COMPOUND \ REMARK 400 THE ENTRY CONTAINS ONLY A PART OF THE CRYSTAL ASYMMETRIC UNIT. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 A 0 249 \ REMARK 465 C 0 250 \ REMARK 465 C 0 251 \ REMARK 465 G 0 252 \ REMARK 465 A 0 253 \ REMARK 465 A 0 254 \ REMARK 465 A 0 255 \ REMARK 465 C 0 256 \ REMARK 465 G 0 257 \ REMARK 465 C 0 258 \ REMARK 465 U 0 259 \ REMARK 465 U 0 260 \ REMARK 465 G 0 261 \ REMARK 465 C 0 262 \ REMARK 465 G 0 263 \ REMARK 465 U 0 264 \ REMARK 465 U 0 265 \ REMARK 465 U 0 266 \ REMARK 465 C 0 267 \ REMARK 465 G 0 268 \ REMARK 465 G 0 269 \ REMARK 465 G 0 270 \ REMARK 465 G 0 271 \ REMARK 465 U 0 272 \ REMARK 465 U 0 273 \ REMARK 465 G 0 274 \ REMARK 465 U 0 275 \ REMARK 465 A 0 276 \ REMARK 465 G 0 277 \ REMARK 465 G 0 278 \ REMARK 465 A 0 279 \ REMARK 465 C 0 280 \ REMARK 465 C 0 281 \ REMARK 465 A 0 282 \ REMARK 465 G 0 283 \ REMARK 465 U 0 284 \ REMARK 465 U 0 285 \ REMARK 465 U 0 286 \ REMARK 465 U 0 287 \ REMARK 465 U 0 288 \ REMARK 465 A 0 289 \ REMARK 465 A 0 290 \ REMARK 465 G 0 291 \ REMARK 465 C 0 374 \ REMARK 465 U 0 375 \ REMARK 465 G 0 376 \ REMARK 465 G 0 377 \ REMARK 465 C 0 378 \ REMARK 465 A 0 379 \ REMARK 465 C 0 380 \ REMARK 465 C 0 381 \ REMARK 465 U 0 382 \ REMARK 465 G 0 383 \ REMARK 465 A 0 384 \ REMARK 465 G 0 385 \ REMARK 465 U 0 386 \ REMARK 465 G 0 892 \ REMARK 465 G 0 893 \ REMARK 465 G 0 894 \ REMARK 465 G 0 895 \ REMARK 465 G 0 896 \ REMARK 465 C 0 897 \ REMARK 465 C 0 898 \ REMARK 465 U 0 899 \ REMARK 465 A 0 900 \ REMARK 465 C 0 901 \ REMARK 465 C 0 902 \ REMARK 465 A 0 903 \ REMARK 465 G 0 904 \ REMARK 465 C 0 905 \ REMARK 465 U 0 906 \ REMARK 465 U 0 907 \ REMARK 465 A 0 908 \ REMARK 465 C 0 909 \ REMARK 465 C 0 910 \ REMARK 465 G 0 1553 \ REMARK 465 G 0 2098 \ REMARK 465 G 0 2099 \ REMARK 465 A 0 2100 \ REMARK 465 U 0 2101 \ REMARK 465 A 0 2102 \ REMARK 465 C 0 2111 \ REMARK 465 C 0 2112 \ REMARK 465 U 0 2113 \ REMARK 465 G 0 2114 \ REMARK 465 C 0 2115 \ REMARK 465 G 0 2116 \ REMARK 465 U 0 2126 \ REMARK 465 U 0 2127 \ REMARK 465 U 0 2128 \ REMARK 465 U 0 2129 \ REMARK 465 G 0 2130 \ REMARK 465 G 0 2131 \ REMARK 465 A 0 2141 \ REMARK 465 G 0 2142 \ REMARK 465 G 0 2143 \ REMARK 465 C 0 2144 \ REMARK 465 A 0 2145 \ REMARK 465 A 0 2146 \ REMARK 465 C 0 2147 \ REMARK 465 G 0 2148 \ REMARK 465 G 0 2149 \ REMARK 465 U 0 2150 \ REMARK 465 G 0 2151 \ REMARK 465 A 0 2152 \ REMARK 465 A 0 2153 \ REMARK 465 A 0 2154 \ REMARK 465 U 0 2155 \ REMARK 465 A 0 2156 \ REMARK 465 U 0 2775 \ REMARK 465 U 0 2776 \ REMARK 465 A 0 2777 \ REMARK 465 C 0 2878 \ REMARK 465 U 0 2879 \ REMARK 465 C 0 2880 \ REMARK 465 MET Q 1 \ REMARK 465 THR Q 2 \ REMARK 465 ALA Q 3 \ REMARK 465 PRO Q 4 \ REMARK 465 MET Z 1 \ REMARK 465 VAL Z 60 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 N4 C 0 1549 O6 G 0 1554 2.06 \ REMARK 500 OP1 A 0 587 O2' U 0 1268 2.11 \ REMARK 500 OP2 U 0 2059 N2 G 0 2217 2.15 \ REMARK 500 N1 A 0 1287 O2' C 0 1661 2.19 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION \ REMARK 500 A 0 929 N1 A 0 929 C2 0.077 \ REMARK 500 G 01149 C6 G 01149 O6 -0.075 \ REMARK 500 C 01549 C2 C 01549 O2 0.065 \ REMARK 500 C 01549 N1 C 01549 C2 0.113 \ REMARK 500 C 01549 N3 C 01549 C4 0.069 \ REMARK 500 G 01554 N1 G 01554 C2 0.052 \ REMARK 500 A 01555 C5 A 01555 C6 0.055 \ REMARK 500 U 02590 O3' C 02591 P -0.083 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 A 0 459 N9 - C1' - C2' ANGL. DEV. = 8.5 DEGREES \ REMARK 500 G 0 633 N1 - C2 - N2 ANGL. DEV. = -5.6 DEGREES \ REMARK 500 G 0 633 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES \ REMARK 500 C 01016 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES \ REMARK 500 C 01016 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES \ REMARK 500 U 02428 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES \ REMARK 500 G 02587 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES \ REMARK 500 G 02587 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES \ REMARK 500 U 02588 OP1 - P - OP2 ANGL. DEV. = -9.1 DEGREES \ REMARK 500 U 02590 C3' - O3' - P ANGL. DEV. = -11.0 DEGREES \ REMARK 500 C 02591 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES \ REMARK 500 C 02660 N1 - C1' - C2' ANGL. DEV. = 8.2 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: PLANAR GROUPS \ REMARK 500 \ REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL \ REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE \ REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN \ REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS \ REMARK 500 AN RMSD GREATER THAN THIS VALUE \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 M RES CSSEQI RMS TYPE \ REMARK 500 G 0 82 0.05 SIDE CHAIN \ REMARK 500 U 0 211 0.07 SIDE CHAIN \ REMARK 500 A 0 343 0.07 SIDE CHAIN \ REMARK 500 U 0 470 0.07 SIDE CHAIN \ REMARK 500 A 0 491 0.06 SIDE CHAIN \ REMARK 500 U 0 535 0.11 SIDE CHAIN \ REMARK 500 C 0 541 0.09 SIDE CHAIN \ REMARK 500 G 0 582 0.05 SIDE CHAIN \ REMARK 500 C 0 759 0.08 SIDE CHAIN \ REMARK 500 G 0 788 0.08 SIDE CHAIN \ REMARK 500 U 0 792 0.07 SIDE CHAIN \ REMARK 500 C 0 804 0.07 SIDE CHAIN \ REMARK 500 U 0 871 0.07 SIDE CHAIN \ REMARK 500 G 0 950 0.05 SIDE CHAIN \ REMARK 500 A 0 994 0.06 SIDE CHAIN \ REMARK 500 G 01149 0.07 SIDE CHAIN \ REMARK 500 G 01249 0.08 SIDE CHAIN \ REMARK 500 C 01264 0.06 SIDE CHAIN \ REMARK 500 G 01265 0.05 SIDE CHAIN \ REMARK 500 G 01322 0.07 SIDE CHAIN \ REMARK 500 U 01342 0.07 SIDE CHAIN \ REMARK 500 G 01345 0.06 SIDE CHAIN \ REMARK 500 G 01471 0.05 SIDE CHAIN \ REMARK 500 A 01619 0.15 SIDE CHAIN \ REMARK 500 C 01674 0.07 SIDE CHAIN \ REMARK 500 A 01682 0.06 SIDE CHAIN \ REMARK 500 U 01723 0.07 SIDE CHAIN \ REMARK 500 U 01766 0.07 SIDE CHAIN \ REMARK 500 C 01791 0.06 SIDE CHAIN \ REMARK 500 A 01811 0.07 SIDE CHAIN \ REMARK 500 U 01938 0.07 SIDE CHAIN \ REMARK 500 G 01963 0.05 SIDE CHAIN \ REMARK 500 G 02036 0.05 SIDE CHAIN \ REMARK 500 A 02043 0.06 SIDE CHAIN \ REMARK 500 U 02249 0.07 SIDE CHAIN \ REMARK 500 U 02251 0.09 SIDE CHAIN \ REMARK 500 G 02255 0.06 SIDE CHAIN \ REMARK 500 U 02369 0.06 SIDE CHAIN \ REMARK 500 U 02501 0.08 SIDE CHAIN \ REMARK 500 A 02513 0.08 SIDE CHAIN \ REMARK 500 A 02608 0.05 SIDE CHAIN \ REMARK 500 C 02686 0.06 SIDE CHAIN \ REMARK 500 G 02687 0.05 SIDE CHAIN \ REMARK 500 U 02708 0.07 SIDE CHAIN \ REMARK 500 U 02719 0.07 SIDE CHAIN \ REMARK 500 G 02739 0.06 SIDE CHAIN \ REMARK 500 G 02821 0.06 SIDE CHAIN \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAO 0 2881 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 1NKW RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS \ REMARK 900 RADIODURANS \ REMARK 900 RELATED ID: 1NJM RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM/SPARSOMYCIN \ REMARK 900 RELATED ID: 1JZY RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN \ REMARK 900 RELATED ID: 1JZZ RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ROXITHROMYCIN \ REMARK 900 RELATED ID: 1NJN RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN \ REMARK 900 RELATED ID: 1JZX RELATED DB: PDB \ REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN \ DBREF 1OND Q 1 134 UNP Q9RXJ7 RL22_DEIRA 1 134 \ DBREF 1OND Z 1 60 UNP P49228 RL32_DEIRA 1 60 \ DBREF 1OND 0 1 2880 PDB 1OND 1OND 1 2880 \ SEQRES 1 0 2880 G G U C A A G A U A G U A \ SEQRES 2 0 2880 A G G G U C C A C G G U G \ SEQRES 3 0 2880 G A U G C C C U G G C G C \ SEQRES 4 0 2880 U G G A G C C G A U G A A \ SEQRES 5 0 2880 G G A C G C G A U U A C C \ SEQRES 6 0 2880 U G C G A A A A G C C C C \ SEQRES 7 0 2880 G A C G A G C U G G A G A \ SEQRES 8 0 2880 U A C G C U U U G A C U C \ SEQRES 9 0 2880 G G G G A U G U C C G A A \ SEQRES 10 0 2880 U G G G G A A A C C C A C \ SEQRES 11 0 2880 C U C G U A A G A G G U A \ SEQRES 12 0 2880 U C C G C A A G G A U G G \ SEQRES 13 0 2880 G A A C U C A G G G A A C \ SEQRES 14 0 2880 U G A A A C A U C U C A G \ SEQRES 15 0 2880 U A C C U G A A G G A G A \ SEQRES 16 0 2880 A G A A A G A G A A U U C \ SEQRES 17 0 2880 G A U U C C G U U A G U A \ SEQRES 18 0 2880 G C G G C G A G C G A A C \ SEQRES 19 0 2880 C C G G A U C A G C C C A \ SEQRES 20 0 2880 A A C C G A A A C G C U U \ SEQRES 21 0 2880 G C G U U U C G G G G U U \ SEQRES 22 0 2880 G U A G G A C C A G U U U \ SEQRES 23 0 2880 U U A A G A U U C A A C C \ SEQRES 24 0 2880 C C U C A A G C C G A A G \ SEQRES 25 0 2880 U G G C U G G A A A G C U \ SEQRES 26 0 2880 A C A C C U C A G A A G G \ SEQRES 27 0 2880 U G A G A G U C C U G U A \ SEQRES 28 0 2880 G G C G A A C G A G C G G \ SEQRES 29 0 2880 U U G A C U G U A C U G G \ SEQRES 30 0 2880 C A C C U G A G U A G G U \ SEQRES 31 0 2880 C G U U G U U C G U G A A \ SEQRES 32 0 2880 A C G A U G A C U G A A U \ SEQRES 33 0 2880 C C G C G C G G A C C A C \ SEQRES 34 0 2880 C G C G C A A G G C U A A \ SEQRES 35 0 2880 A U A C U C C C A G U G A \ SEQRES 36 0 2880 C C G A U A G C G C A U A \ SEQRES 37 0 2880 G U A C C G U G A G G G A \ SEQRES 38 0 2880 A A G G U G A A A A G A A \ SEQRES 39 0 2880 C C C C G G G A G G G G A \ SEQRES 40 0 2880 G U G A A A G A G A A C C \ SEQRES 41 0 2880 U G A A A C C G U G G A C \ SEQRES 42 0 2880 U U A C A A G C A G U C A \ SEQRES 43 0 2880 U G G C A C C U U A U G C \ SEQRES 44 0 2880 G U G U U A U G G C G U G \ SEQRES 45 0 2880 C C U A U U G A A G C A U \ SEQRES 46 0 2880 G A G C C G G C G A C U U \ SEQRES 47 0 2880 A G A C C U G A C G U G C \ SEQRES 48 0 2880 G A G C U U A A G U U G A \ SEQRES 49 0 2880 A A A A C G G A G G C G G \ SEQRES 50 0 2880 A G C G A A A G C G A G U \ SEQRES 51 0 2880 C C G A A U A G G G C G G \ SEQRES 52 0 2880 C A U U A G U A C G U C G \ SEQRES 53 0 2880 G G C U A G A C U C G A A \ SEQRES 54 0 2880 A C C A G G U G A G C U A \ SEQRES 55 0 2880 A G C A U G A C C A G G U \ SEQRES 56 0 2880 U G A A A C C C C C G U G \ SEQRES 57 0 2880 A C A G G G G G C G G A G \ SEQRES 58 0 2880 G A C C G A A C C G G U G \ SEQRES 59 0 2880 C C U G C U G A A A C A G \ SEQRES 60 0 2880 U C U C G G A U G A G U U \ SEQRES 61 0 2880 G U G U U U A G G A G U G \ SEQRES 62 0 2880 A A A A G C U A A C C G A \ SEQRES 63 0 2880 A C C U G G A G A U A G C \ SEQRES 64 0 2880 U A G U U C U C C C C G A \ SEQRES 65 0 2880 A A U G U A U U G A G G U \ SEQRES 66 0 2880 A C A G C C U C G G A U G \ SEQRES 67 0 2880 U U G A C C A U G U C C U \ SEQRES 68 0 2880 G U A G A G C A C U C A C \ SEQRES 69 0 2880 A A G G C U A G G G G G C \ SEQRES 70 0 2880 C U A C C A G C U U A C C \ SEQRES 71 0 2880 A A A C C U U A U G A A A \ SEQRES 72 0 2880 C U C C G A A G G G G C A \ SEQRES 73 0 2880 C G C G U U U A G U C C G \ SEQRES 74 0 2880 G G A G U G A G G C U G C \ SEQRES 75 0 2880 G A G A G C U A A C U U C \ SEQRES 76 0 2880 C G U A G C C G A G A G G \ SEQRES 77 0 2880 G A A A C A A C C C A G A \ SEQRES 78 0 2880 C C A U C A G C U A A G G \ SEQRES 79 0 2880 U C C C U A A A U G A U C \ SEQRES 80 0 2880 G C U C A G U G G U U A A \ SEQRES 81 0 2880 G G A U G U G U C G U C G \ SEQRES 82 0 2880 C A U A G A C A G C C A G \ SEQRES 83 0 2880 G A G G U U G G C U U A G \ SEQRES 84 0 2880 A A G C A G C C A C C C U \ SEQRES 85 0 2880 U C A A A G A G U G C G U \ SEQRES 86 0 2880 A A U A G C U C A C U G G \ SEQRES 87 0 2880 U C G A G U G A C G A U G \ SEQRES 88 0 2880 C G C C G A A A A U G A U \ SEQRES 89 0 2880 C G G G G C U C A A G U G \ SEQRES 90 0 2880 A U C U A C C G A A G C U \ SEQRES 91 0 2880 A U G G A U U C A A C U C \ SEQRES 92 0 2880 G C G A A G C G A G U U G \ SEQRES 93 0 2880 U C U G G U A G G G G A G \ SEQRES 94 0 2880 C G U U C A G U C C G C G \ SEQRES 95 0 2880 G A G A A G C C A U A C C \ SEQRES 96 0 2880 G G A A G G A G U G G U G \ SEQRES 97 0 2880 G A G C C G A C U G A A G \ SEQRES 98 0 2880 U G C G G A U G C C G G C \ SEQRES 99 0 2880 A U G A G U A A C G A U A \ SEQRES 100 0 2880 A A A G A A G U G A G A A \ SEQRES 101 0 2880 U C U U C U U C G C C G U \ SEQRES 102 0 2880 A A G G A C A A G G G U U \ SEQRES 103 0 2880 C C U G G G G A A G G G U \ SEQRES 104 0 2880 C G U C C G C C C A G G G \ SEQRES 105 0 2880 A A A G U C G G G A C C U \ SEQRES 106 0 2880 A A G G U G A G G C C G A \ SEQRES 107 0 2880 A C G G C G C A G C C G A \ SEQRES 108 0 2880 U G G A C A G C A G G U C \ SEQRES 109 0 2880 A A G A U U C C U G C A C \ SEQRES 110 0 2880 C G A U C A U G U G G A G \ SEQRES 111 0 2880 U G A U G G A G G G A C G \ SEQRES 112 0 2880 C A U U A C G C U A U C C \ SEQRES 113 0 2880 A A U G C C A A G C U A U \ SEQRES 114 0 2880 G G C U A U G C U G G U U \ SEQRES 115 0 2880 G G U A C G C U C A A G G \ SEQRES 116 0 2880 G C G A U C G G G U C A G \ SEQRES 117 0 2880 A A A A U C U A C C G G U \ SEQRES 118 0 2880 C A C A U G C C U C A G A \ SEQRES 119 0 2880 C G U A U C G G G A G C U \ SEQRES 120 0 2880 U C C U C G G A A G C G A \ SEQRES 121 0 2880 A G U U G G A A A C G C G \ SEQRES 122 0 2880 A C G G U G C C A A G A A \ SEQRES 123 0 2880 A A G C U U C U A A A C G \ SEQRES 124 0 2880 U U G A A A C A U G A U U \ SEQRES 125 0 2880 G C C C G U A C C G C A A \ SEQRES 126 0 2880 A C C G A C A C A G G U G \ SEQRES 127 0 2880 U C C G A G U G U C A A U \ SEQRES 128 0 2880 G C A C U A A G G C G C G \ SEQRES 129 0 2880 C G A G A G A A C C C U C \ SEQRES 130 0 2880 G U U A A G G A A C U U U \ SEQRES 131 0 2880 G C A A U C U C A C C C C \ SEQRES 132 0 2880 G U A A C U U C G G A A G \ SEQRES 133 0 2880 A A G G G G U C C C C A C \ SEQRES 134 0 2880 G C U U C G C G U G G G G \ SEQRES 135 0 2880 C G C A G U G A A U A G G \ SEQRES 136 0 2880 C C C A G G C G A C U G U \ SEQRES 137 0 2880 U U A C C A A A A U C A C \ SEQRES 138 0 2880 A G C A C U C U G C C A A \ SEQRES 139 0 2880 C A C G A A C A G U G G A \ SEQRES 140 0 2880 C G U A U A G G G U G U G \ SEQRES 141 0 2880 A C G C C U G C C C G G U \ SEQRES 142 0 2880 G C C G G A A G G U C A A \ SEQRES 143 0 2880 G U G G A G C G G U G C A \ SEQRES 144 0 2880 A G C U G C G A A A U G A \ SEQRES 145 0 2880 A G C C C C G G U G A A C \ SEQRES 146 0 2880 G G C G G C C G U A A C U \ SEQRES 147 0 2880 A U A A C G G U C C U A A \ SEQRES 148 0 2880 G G U A G C G A A A U U C \ SEQRES 149 0 2880 C U U G U C G G G U A A G \ SEQRES 150 0 2880 U U C C G A C C U G C A C \ SEQRES 151 0 2880 G A A A G G C G U A A C G \ SEQRES 152 0 2880 A U C U G G G C G C U G U \ SEQRES 153 0 2880 C U C A A C G A G G G A C \ SEQRES 154 0 2880 U C G G U G A A A U U G A \ SEQRES 155 0 2880 A U U G G C U G U A A A G \ SEQRES 156 0 2880 A U G C G G C C U A C C C \ SEQRES 157 0 2880 G U A G C A G G A C G A A \ SEQRES 158 0 2880 A A G A C C C C G U G G A \ SEQRES 159 0 2880 G C U U U A C U A U A G U \ SEQRES 160 0 2880 C U G G C A U U G G G A U \ SEQRES 161 0 2880 U C G G G U U U C U C U G \ SEQRES 162 0 2880 C G U A G G A U A G G U G \ SEQRES 163 0 2880 G G A G C C U G C G A A A \ SEQRES 164 0 2880 C U G G C C U U U U G G G \ SEQRES 165 0 2880 G U C G G U G G A G G C A \ SEQRES 166 0 2880 A C G G U G A A A U A C C \ SEQRES 167 0 2880 A C C C U G A G A A A C U \ SEQRES 168 0 2880 U G G A U U U C U A A C C \ SEQRES 169 0 2880 U G A A A A A U C A C U U \ SEQRES 170 0 2880 U C G G G G A C C G U G C \ SEQRES 171 0 2880 U U G G C G G G U A G U U \ SEQRES 172 0 2880 U G A C U G G G G C G G U \ SEQRES 173 0 2880 C G C C U C C C A A A A U \ SEQRES 174 0 2880 G U A A C G G A G G C G C \ SEQRES 175 0 2880 C C A A A G G U C A C C U \ SEQRES 176 0 2880 C A A G A C G G U U G G A \ SEQRES 177 0 2880 A A U C G U C U G U A G A \ SEQRES 178 0 2880 G C G C A A A G G U A G A \ SEQRES 179 0 2880 A G G U G G C U U G A C U \ SEQRES 180 0 2880 G C G A G A C U G A C A C \ SEQRES 181 0 2880 G U C G A G C A G G G A G \ SEQRES 182 0 2880 G A A A C U C G G G C U U \ SEQRES 183 0 2880 A G U G A A C C G G U G G \ SEQRES 184 0 2880 U A C C G U G U G G A A G \ SEQRES 185 0 2880 G G C C A U C G A U C A A \ SEQRES 186 0 2880 C G G A U A A A A G U U A \ SEQRES 187 0 2880 C C C C G G G G A U A A C \ SEQRES 188 0 2880 A G G C U G A U C U C C C \ SEQRES 189 0 2880 C C G A G A G U C C A U A \ SEQRES 190 0 2880 U C G G C G G G G A G G U \ SEQRES 191 0 2880 U U G G C A C C U C G A U \ SEQRES 192 0 2880 G U C G G C U C G U C G C \ SEQRES 193 0 2880 A U C C U G G G G C U G A \ SEQRES 194 0 2880 A G A A G G U C C C A A G \ SEQRES 195 0 2880 G G U U G G G C U G U U C \ SEQRES 196 0 2880 G C C C A U U A A A G C G \ SEQRES 197 0 2880 G C A C G C G A G C U G G \ SEQRES 198 0 2880 G U U C A G A A C G U C G \ SEQRES 199 0 2880 U G A G A C A G U U C G G \ SEQRES 200 0 2880 U C U C U A U C C G C U A \ SEQRES 201 0 2880 C G G G C G C A G G A G A \ SEQRES 202 0 2880 A U U G A G G G G A G U U \ SEQRES 203 0 2880 G C U C C U A G U A C G A \ SEQRES 204 0 2880 G A G G A C C G G A G U G \ SEQRES 205 0 2880 A A C G G A C C G C U G G \ SEQRES 206 0 2880 U C U C C C U G C U G U C \ SEQRES 207 0 2880 G U A C C A A C G G C A C \ SEQRES 208 0 2880 A U G C A G G G U A G C U \ SEQRES 209 0 2880 A U G U C C G G A A C G G \ SEQRES 210 0 2880 A U A A C C G C U G A A A \ SEQRES 211 0 2880 G C A U C U A A G C G G G \ SEQRES 212 0 2880 A A G C C A G C C C C A A \ SEQRES 213 0 2880 G A U G A G U U C U C C C \ SEQRES 214 0 2880 A C U G U U U A U C A G G \ SEQRES 215 0 2880 U A A G A C U C C C G G A \ SEQRES 216 0 2880 A G A C C A C C G G G U U \ SEQRES 217 0 2880 A A G A G G C C A G G C G \ SEQRES 218 0 2880 U G C A C G C A U A G C A \ SEQRES 219 0 2880 A U G U G U U C A G C G G \ SEQRES 220 0 2880 A C U G G U G C U C A U C \ SEQRES 221 0 2880 A G U C G A G G U C U U G \ SEQRES 222 0 2880 A C C A C U C \ SEQRES 1 Q 134 MET THR ALA PRO GLU GLN THR PHE ARG ASN LYS LYS GLN \ SEQRES 2 Q 134 ARG LYS GLN GLN VAL LYS LEU ARG LYS PRO GLY PHE ALA \ SEQRES 3 Q 134 VAL ALA LYS TYR VAL ARG MET SER PRO ARG LYS VAL ARG \ SEQRES 4 Q 134 LEU VAL VAL ASP VAL ILE ARG GLY LYS SER VAL GLN ASP \ SEQRES 5 Q 134 ALA GLU ASP LEU LEU ARG PHE ILE PRO ARG SER ALA SER \ SEQRES 6 Q 134 GLU PRO VAL ALA LYS VAL LEU ASN SER ALA LYS ALA ASN \ SEQRES 7 Q 134 ALA LEU HIS ASN ASP GLU MET LEU GLU ASP ARG LEU PHE \ SEQRES 8 Q 134 VAL LYS GLU ALA TYR VAL ASP ALA GLY PRO THR LEU LYS \ SEQRES 9 Q 134 ARG LEU ILE PRO ARG ALA ARG GLY SER ALA ASN ILE ILE \ SEQRES 10 Q 134 LYS LYS ARG THR SER HIS ILE THR ILE ILE VAL ALA GLU \ SEQRES 11 Q 134 LYS GLY ASN LYS \ SEQRES 1 Z 60 MET ALA LYS HIS PRO VAL PRO LYS LYS LYS THR SER LYS \ SEQRES 2 Z 60 SER LYS ARG ASP MET ARG ARG SER HIS HIS ALA LEU THR \ SEQRES 3 Z 60 ALA PRO ASN LEU THR GLU CYS PRO GLN CYS HIS GLY LYS \ SEQRES 4 Z 60 LYS LEU SER HIS HIS ILE CYS PRO ASN CYS GLY TYR TYR \ SEQRES 5 Z 60 ASP GLY ARG GLN VAL LEU ALA VAL \ HET TAO 02881 57 \ HETNAM TAO TROLEANDOMYCIN \ HETSYN TAO (3R,5S,6S,7R,8S,11S,12R,13S,14R,15S)-12-[(4-O-ACETYL-2, \ HETSYN 2 TAO 6-DIDEOXY-3-O-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSYL) \ HETSYN 3 TAO OXY]-14-{[2-O-ACETYL-3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)- \ HETSYN 4 TAO BETA-D-XYLO-HEXOPYRANOSYL]OXY}-5,7,8,11,13,15- \ HETSYN 5 TAO HEXAMETHYL-4,10-DIOXO-1,9-DIOXASPIRO[2.13]HEXADEC-6-YL \ HETSYN 6 TAO ACETATE \ FORMUL 4 TAO C41 H67 N O15 \ SITE 1 AC1 11 C 0 759 U 0 760 G 0 761 A 0 764 \ SITE 2 AC1 11 C 0 803 A 02041 A 02045 A 02482 \ SITE 3 AC1 11 C 02589 U 02590 ALA Z 2 \ CRYST1 170.250 411.090 695.340 90.00 90.00 90.00 I 2 2 2 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.005874 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.002433 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.001438 0.00000 \ TER 59337 A 02877 \ ATOM 59338 CA GLU Q 5 -22.648 94.637 113.189 1.00139.74 C \ ATOM 59339 CA GLN Q 6 -23.260 98.130 114.580 1.00147.43 C \ ATOM 59340 CA THR Q 7 -23.171 99.259 110.912 1.00122.44 C \ ATOM 59341 CA PHE Q 8 -24.065 102.949 110.549 1.00 80.22 C \ ATOM 59342 CA ARG Q 9 -24.832 105.563 107.878 1.00 65.82 C \ ATOM 59343 CA ASN Q 10 -22.165 108.176 107.313 1.00 72.75 C \ ATOM 59344 CA LYS Q 11 -18.673 109.199 108.479 1.00 60.43 C \ ATOM 59345 CA LYS Q 12 -20.914 111.167 110.786 1.00 50.82 C \ ATOM 59346 CA GLN Q 13 -24.175 109.575 111.982 1.00 83.27 C \ ATOM 59347 CA ARG Q 14 -22.485 106.883 114.085 1.00 71.12 C \ ATOM 59348 CA LYS Q 15 -20.844 109.864 115.749 1.00 43.72 C \ ATOM 59349 CA GLN Q 16 -24.157 111.280 116.983 1.00 54.18 C \ ATOM 59350 CA GLN Q 17 -25.133 107.715 117.892 1.00 72.32 C \ ATOM 59351 CA VAL Q 18 -22.292 106.189 119.982 1.00 78.79 C \ ATOM 59352 CA LYS Q 19 -20.751 109.017 122.110 1.00 73.88 C \ ATOM 59353 CA LEU Q 20 -17.386 107.225 121.595 1.00 79.71 C \ ATOM 59354 CA ARG Q 21 -15.942 107.461 125.092 1.00 74.81 C \ ATOM 59355 CA LYS Q 22 -13.154 105.214 126.492 1.00 47.07 C \ ATOM 59356 CA PRO Q 23 -13.377 104.342 130.144 1.00 24.76 C \ ATOM 59357 CA GLY Q 24 -10.917 102.989 132.649 1.00 26.36 C \ ATOM 59358 CA PHE Q 25 -8.312 105.551 131.611 1.00 26.90 C \ ATOM 59359 CA ALA Q 26 -7.313 108.248 134.062 1.00 20.66 C \ ATOM 59360 CA VAL Q 27 -4.630 110.432 132.573 1.00 23.03 C \ ATOM 59361 CA ALA Q 28 -2.521 113.005 134.345 1.00 28.70 C \ ATOM 59362 CA LYS Q 29 -0.783 115.927 131.946 1.00 26.15 C \ ATOM 59363 CA TYR Q 30 1.307 118.864 133.077 1.00 40.78 C \ ATOM 59364 CA VAL Q 31 3.136 117.129 135.995 1.00 45.65 C \ ATOM 59365 CA ARG Q 32 6.542 118.940 136.334 1.00 39.56 C \ ATOM 59366 CA MET Q 33 8.560 115.563 137.099 1.00 48.76 C \ ATOM 59367 CA SER Q 34 10.838 114.238 134.498 1.00 34.15 C \ ATOM 59368 CA PRO Q 35 9.919 111.455 131.881 1.00 35.45 C \ ATOM 59369 CA ARG Q 36 12.305 108.419 132.026 1.00 40.71 C \ ATOM 59370 CA LYS Q 37 12.048 108.514 135.670 1.00 25.07 C \ ATOM 59371 CA VAL Q 38 8.374 108.839 136.522 1.00 15.33 C \ ATOM 59372 CA ARG Q 39 8.462 105.628 134.572 1.00 12.08 C \ ATOM 59373 CA LEU Q 40 10.806 103.234 136.281 1.00 10.69 C \ ATOM 59374 CA VAL Q 41 8.364 103.672 139.158 1.00 10.23 C \ ATOM 59375 CA VAL Q 42 5.190 103.531 137.004 1.00 10.08 C \ ATOM 59376 CA ASP Q 43 6.504 100.172 135.829 1.00 14.48 C \ ATOM 59377 CA VAL Q 44 6.768 97.797 138.822 1.00 22.95 C \ ATOM 59378 CA ILE Q 45 3.035 98.577 139.241 1.00 23.28 C \ ATOM 59379 CA ARG Q 46 1.581 97.775 135.808 1.00 17.25 C \ ATOM 59380 CA GLY Q 47 0.421 94.170 135.520 1.00 13.80 C \ ATOM 59381 CA LYS Q 48 -1.027 92.994 138.859 1.00 11.80 C \ ATOM 59382 CA SER Q 49 -3.944 93.210 141.357 1.00 24.36 C \ ATOM 59383 CA VAL Q 50 -5.060 96.819 140.920 1.00 27.94 C \ ATOM 59384 CA GLN Q 51 -4.280 96.826 144.619 1.00 21.80 C \ ATOM 59385 CA ASP Q 52 -0.801 95.288 144.478 1.00 14.40 C \ ATOM 59386 CA ALA Q 53 0.394 98.465 142.851 1.00 14.87 C \ ATOM 59387 CA GLU Q 54 -1.424 100.720 145.290 1.00 15.03 C \ ATOM 59388 CA ASP Q 55 0.953 98.995 147.712 1.00 14.61 C \ ATOM 59389 CA LEU Q 56 4.110 98.149 145.791 1.00 14.86 C \ ATOM 59390 CA LEU Q 57 3.665 101.915 145.554 1.00 12.01 C \ ATOM 59391 CA ARG Q 58 4.385 102.547 149.286 1.00 13.64 C \ ATOM 59392 CA PHE Q 59 7.883 101.066 149.322 1.00 31.38 C \ ATOM 59393 CA ILE Q 60 9.102 101.848 145.793 1.00 37.71 C \ ATOM 59394 CA PRO Q 61 11.081 104.806 147.244 1.00 22.63 C \ ATOM 59395 CA ARG Q 62 11.073 107.216 144.271 1.00 21.68 C \ ATOM 59396 CA SER Q 63 9.555 110.711 144.689 1.00 24.12 C \ ATOM 59397 CA ALA Q 64 7.334 110.105 141.684 1.00 20.03 C \ ATOM 59398 CA SER Q 65 5.849 106.999 143.179 1.00 15.91 C \ ATOM 59399 CA GLU Q 66 3.416 109.665 144.327 1.00 11.97 C \ ATOM 59400 CA PRO Q 67 1.786 111.514 141.457 1.00 14.24 C \ ATOM 59401 CA VAL Q 68 2.367 108.289 139.506 1.00 15.00 C \ ATOM 59402 CA ALA Q 69 -0.105 106.507 141.722 1.00 27.65 C \ ATOM 59403 CA LYS Q 70 -2.533 109.178 142.894 1.00 38.28 C \ ATOM 59404 CA VAL Q 71 -3.764 108.542 139.391 1.00 19.95 C \ ATOM 59405 CA LEU Q 72 -3.130 104.793 139.479 1.00 22.89 C \ ATOM 59406 CA ASN Q 73 -6.041 104.522 141.869 1.00 25.53 C \ ATOM 59407 CA SER Q 74 -7.932 107.484 140.459 1.00 27.36 C \ ATOM 59408 CA ALA Q 75 -8.811 104.811 137.912 1.00 53.85 C \ ATOM 59409 CA LYS Q 76 -9.995 101.996 140.159 1.00 53.74 C \ ATOM 59410 CA ALA Q 77 -11.767 104.976 141.641 1.00 32.12 C \ ATOM 59411 CA ASN Q 78 -13.108 106.629 138.474 1.00 24.92 C \ ATOM 59412 CA ALA Q 79 -13.634 103.087 137.193 1.00 21.67 C \ ATOM 59413 CA LEU Q 80 -15.538 101.574 140.099 1.00 32.76 C \ ATOM 59414 CA HIS Q 81 -18.268 104.174 139.555 1.00 48.93 C \ ATOM 59415 CA ASN Q 82 -18.214 105.870 136.168 1.00 45.44 C \ ATOM 59416 CA ASP Q 83 -18.092 102.512 134.202 1.00 36.28 C \ ATOM 59417 CA GLU Q 84 -18.796 100.314 137.271 1.00 43.17 C \ ATOM 59418 CA MET Q 85 -17.119 96.948 137.852 1.00 43.06 C \ ATOM 59419 CA LEU Q 86 -16.285 94.731 140.853 1.00 45.70 C \ ATOM 59420 CA GLU Q 87 -13.180 96.496 142.168 1.00 47.54 C \ ATOM 59421 CA ASP Q 88 -12.240 93.282 144.017 1.00 40.16 C \ ATOM 59422 CA ARG Q 89 -10.821 92.179 140.674 1.00 36.37 C \ ATOM 59423 CA LEU Q 90 -9.880 95.541 139.135 1.00 27.19 C \ ATOM 59424 CA PHE Q 91 -6.359 95.015 137.762 1.00 36.44 C \ ATOM 59425 CA VAL Q 92 -3.879 97.123 135.692 1.00 43.06 C \ ATOM 59426 CA LYS Q 93 -3.968 96.002 132.055 1.00 21.75 C \ ATOM 59427 CA GLU Q 94 -2.270 99.077 130.691 1.00 13.92 C \ ATOM 59428 CA ALA Q 95 -0.314 101.938 132.301 1.00 14.79 C \ ATOM 59429 CA TYR Q 96 2.446 104.141 130.874 1.00 16.92 C \ ATOM 59430 CA VAL Q 97 3.814 107.691 131.027 1.00 20.03 C \ ATOM 59431 CA ASP Q 98 4.360 109.955 127.972 1.00 14.23 C \ ATOM 59432 CA ALA Q 99 5.863 113.366 127.198 1.00 12.29 C \ ATOM 59433 CA GLY Q 100 4.819 116.856 128.146 1.00 20.18 C \ ATOM 59434 CA PRO Q 101 5.337 120.548 127.513 1.00 26.55 C \ ATOM 59435 CA THR Q 102 9.090 120.594 128.279 1.00 21.64 C \ ATOM 59436 CA LEU Q 103 9.727 123.727 130.391 1.00 32.95 C \ ATOM 59437 CA LYS Q 104 13.487 124.699 130.153 1.00 29.61 C \ ATOM 59438 CA ARG Q 105 15.369 127.948 131.182 1.00 37.69 C \ ATOM 59439 CA LEU Q 106 18.812 129.828 130.734 1.00 53.84 C \ ATOM 59440 CA ILE Q 107 19.822 131.664 127.377 1.00 52.61 C \ ATOM 59441 CA PRO Q 108 19.890 131.064 123.454 1.00 44.22 C \ ATOM 59442 CA ARG Q 109 21.984 132.695 120.632 1.00 49.45 C \ ATOM 59443 CA ALA Q 110 23.390 136.308 119.983 1.00 38.63 C \ ATOM 59444 CA ARG Q 111 27.242 135.547 120.219 1.00 39.28 C \ ATOM 59445 CA GLY Q 112 28.546 132.816 122.698 1.00 39.37 C \ ATOM 59446 CA SER Q 113 27.937 131.533 126.428 1.00 30.28 C \ ATOM 59447 CA ALA Q 114 24.984 129.767 128.501 1.00 28.87 C \ ATOM 59448 CA ASN Q 115 23.458 126.263 128.327 1.00 25.42 C \ ATOM 59449 CA ILE Q 116 19.661 125.523 128.452 1.00 15.14 C \ ATOM 59450 CA ILE Q 117 18.206 123.586 131.426 1.00 12.14 C \ ATOM 59451 CA LYS Q 118 15.505 121.263 130.120 1.00 18.19 C \ ATOM 59452 CA LYS Q 119 12.951 120.217 132.767 1.00 26.02 C \ ATOM 59453 CA ARG Q 120 10.675 117.543 131.453 1.00 27.68 C \ ATOM 59454 CA THR Q 121 6.916 117.475 132.094 1.00 28.83 C \ ATOM 59455 CA SER Q 122 5.652 113.906 131.780 1.00 36.44 C \ ATOM 59456 CA HIS Q 123 1.926 112.957 131.395 1.00 39.14 C \ ATOM 59457 CA ILE Q 124 1.436 109.587 133.102 1.00 33.06 C \ ATOM 59458 CA THR Q 125 -1.703 107.535 132.498 1.00 24.57 C \ ATOM 59459 CA ILE Q 126 -3.030 104.163 133.673 1.00 15.05 C \ ATOM 59460 CA ILE Q 127 -6.034 102.204 132.435 1.00 19.54 C \ ATOM 59461 CA VAL Q 128 -7.674 99.898 134.958 1.00 20.89 C \ ATOM 59462 CA ALA Q 129 -9.277 97.064 133.777 1.00 14.87 C \ ATOM 59463 CA GLU Q 130 -11.102 94.002 135.029 1.00 43.64 C \ ATOM 59464 CA LYS Q 131 -8.686 91.177 134.235 1.00103.02 C \ ATOM 59465 CA GLY Q 132 -9.856 87.563 134.303 1.00127.13 C \ ATOM 59466 CA ASN Q 133 -8.433 84.655 132.298 1.00144.33 C \ ATOM 59467 CA LYS Q 134 -12.077 83.813 131.457 1.00167.25 C \ TER 59468 LYS Q 134 \ TER 59527 ALA Z 59 \ CONECT5952859529 \ CONECT595295952859530 \ CONECT59530595295953159536 \ CONECT595315953059532 \ CONECT59532595315953359541 \ CONECT595335953259534 \ CONECT59534595335953559536 \ CONECT5953559534 \ CONECT59536595305953459537 \ CONECT595375953659538 \ CONECT59538595375953959540 \ CONECT5953959538 \ CONECT5954059538 \ CONECT595415953259542 \ CONECT59542595415954359581 \ CONECT59543595425954459584 \ CONECT59544595435954559546 \ CONECT5954559544 \ CONECT595465954459547 \ CONECT59547595465954859549 \ CONECT5954859547 \ CONECT59549595475955059551 \ CONECT5955059549 \ CONECT59551595495955259556 \ CONECT595525955159553 \ CONECT59553595525955459555 \ CONECT5955459553 \ CONECT5955559553 \ CONECT59556595515955759583 \ CONECT59557595565955859559 \ CONECT5955859557 \ CONECT5955959557595605956159562 \ CONECT595605955959561 \ CONECT595615955959560 \ CONECT595625955959563 \ CONECT59563595625956459565 \ CONECT5956459563 \ CONECT59565595635956659581 \ CONECT595665956559567 \ CONECT59567595665956859576 \ CONECT595685956759569 \ CONECT59569595685957059571 \ CONECT5957059569 \ CONECT595715956959572 \ CONECT59572595715957359576 \ CONECT59573595725957459575 \ CONECT5957459573 \ CONECT5957559573 \ CONECT59576595675957259577 \ CONECT595775957659578 \ CONECT59578595775957959580 \ CONECT5957959578 \ CONECT5958059578 \ CONECT59581595425956559582 \ CONECT5958259581 \ CONECT5958359556 \ CONECT5958459543 \ MASTER 514 0 1 0 0 0 3 659581 3 57 238 \ END \ """, "chainQ") cmd.hide("all") cmd.color('grey70', "chainQ") cmd.show('ribbon', "chainQ") cmd.select("e1ondQ1", "c. Q & i. 5-134") cmd.center("e1ondQ1", state=0, origin=1) cmd.zoom("e1ondQ1", animate=-1) cmd.show_as('cartoon', "e1ondQ1") cmd.spectrum('count', 'rainbow', "e1ondQ1") cmd.disable("e1ondQ1")