cmd.read_pdbstr("""\ HEADER IMMUNE SYSTEM 12-JUL-05 2A9M \ TITLE STRUCTURAL ANALYSIS OF A TIGHT-BINDING FLUORESCEIN-SCFV; APO FORM \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: FLUORESCEIN-SCFV; \ COMPND 3 CHAIN: A, B; \ COMPND 4 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 3 ORGANISM_COMMON: HUMAN; \ SOURCE 4 ORGANISM_TAXID: 9606; \ SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SB536; \ SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PAK400 \ KEYWDS IMMUNOGLOBULINS, FLUORESCEIN, IMMUNE SYSTEM \ EXPDTA X-RAY DIFFRACTION \ AUTHOR C.CAMBILLAU,S.SPINELLI,A.HONEGGER,A.PLUCKTHUN \ REVDAT 6 20-NOV-24 2A9M 1 REMARK \ REVDAT 5 03-APR-24 2A9M 1 COMPND SOURCE REMARK DBREF \ REVDAT 5 2 1 SEQADV SEQRES HELIX SHEET \ REVDAT 5 3 1 SSBOND ATOM \ REVDAT 4 23-AUG-23 2A9M 1 SEQADV \ REVDAT 3 13-JUL-11 2A9M 1 VERSN \ REVDAT 2 24-FEB-09 2A9M 1 VERSN \ REVDAT 1 25-OCT-05 2A9M 0 \ JRNL AUTH A.HONEGGER,S.SPINELLI,C.CAMBILLAU,A.PLUCKTHUN \ JRNL TITL A MUTATION DESIGNED TO ALTER CRYSTAL PACKING PERMITS \ JRNL TITL 2 STRUCTURAL ANALYSIS OF A TIGHT-BINDING FLUORESCEIN-SCFV \ JRNL TITL 3 COMPLEX. \ JRNL REF PROTEIN SCI. V. 14 2537 2005 \ JRNL REFN ISSN 0961-8368 \ JRNL PMID 16195545 \ JRNL DOI 10.1110/PS.051520605 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.10 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.2.0005 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 \ REMARK 3 NUMBER OF REFLECTIONS : 27511 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 \ REMARK 3 R VALUE (WORKING SET) : 0.210 \ REMARK 3 FREE R VALUE : 0.263 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1022 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 2058 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.48 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 \ REMARK 3 BIN FREE R VALUE SET COUNT : 72 \ REMARK 3 BIN FREE R VALUE : 0.2550 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 3508 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 0 \ REMARK 3 SOLVENT ATOMS : 315 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 B VALUE TYPE : LIKELY RESIDUAL \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.85 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 0.33000 \ REMARK 3 B22 (A**2) : -0.48000 \ REMARK 3 B33 (A**2) : 0.20000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.20000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.255 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.158 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3597 ; 0.011 ; 0.021 \ REMARK 3 BOND LENGTHS OTHERS (A): 3109 ; 0.002 ; 0.020 \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4885 ; 1.319 ; 1.937 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): 7227 ; 0.811 ; 3.000 \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.905 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;39.240 ;23.401 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 541 ;17.914 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.667 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.087 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4112 ; 0.004 ; 0.020 \ REMARK 3 GENERAL PLANES OTHERS (A): 772 ; 0.001 ; 0.020 \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 629 ; 0.199 ; 0.200 \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3131 ; 0.193 ; 0.200 \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1676 ; 0.177 ; 0.200 \ REMARK 3 NON-BONDED TORSION OTHERS (A): 2126 ; 0.087 ; 0.200 \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 221 ; 0.163 ; 0.200 \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.108 ; 0.200 \ REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.172 ; 0.200 \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.193 ; 0.200 \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 0.743 ; 1.500 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 978 ; 0.100 ; 1.500 \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3668 ; 0.902 ; 2.000 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1568 ; 1.289 ; 3.000 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 1.927 ; 4.500 \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 2A9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-05. \ REMARK 100 THE DEPOSITION ID IS D_1000033657. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 27-NOV-00 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 5.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : ESRF \ REMARK 200 BEAMLINE : ID14-4 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 \ REMARK 200 MONOCHROMATOR : MIRROR \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27511 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 \ REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 \ REMARK 200 DATA REDUNDANCY : NULL \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : NULL \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: AMORE \ REMARK 200 STARTING MODEL: PDB ENTRY: 1A7N \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 48.00 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 150 MM SODIUM \ REMARK 280 CITRATE , PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.75000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 SER A 126A \ REMARK 465 GLY A 126B \ REMARK 465 GLY A 126C \ REMARK 465 GLY A 126D \ REMARK 465 GLY A 126E \ REMARK 465 SER A 126F \ REMARK 465 GLY A 126G \ REMARK 465 GLY A 126H \ REMARK 465 GLY A 126I \ REMARK 465 GLY A 126J \ REMARK 465 SER A 126K \ REMARK 465 GLY A 126L \ REMARK 465 GLY A 126M \ REMARK 465 GLY A 126N \ REMARK 465 GLY A 126O \ REMARK 465 SER A 126P \ REMARK 465 GLN A 126Q \ REMARK 465 SER A 126R \ REMARK 465 LEU A 235 \ REMARK 465 GLY A 236 \ REMARK 465 ALA A 237 \ REMARK 465 SER A 238 \ REMARK 465 GLY A 239 \ REMARK 465 ALA A 240 \ REMARK 465 ASP A 241 \ REMARK 465 HIS A 242 \ REMARK 465 HIS A 243 \ REMARK 465 HIS A 244 \ REMARK 465 HIS A 245 \ REMARK 465 HIS A 246 \ REMARK 465 HIS A 247 \ REMARK 465 SER B 126A \ REMARK 465 GLY B 126B \ REMARK 465 GLY B 126C \ REMARK 465 GLY B 126D \ REMARK 465 GLY B 126E \ REMARK 465 SER B 126F \ REMARK 465 GLY B 126G \ REMARK 465 GLY B 126H \ REMARK 465 GLY B 126I \ REMARK 465 GLY B 126J \ REMARK 465 SER B 126K \ REMARK 465 GLY B 126L \ REMARK 465 GLY B 126M \ REMARK 465 GLY B 126N \ REMARK 465 GLY B 126O \ REMARK 465 SER B 126P \ REMARK 465 GLN B 126Q \ REMARK 465 GLY B 236 \ REMARK 465 ALA B 237 \ REMARK 465 SER B 238 \ REMARK 465 GLY B 239 \ REMARK 465 ALA B 240 \ REMARK 465 ASP B 241 \ REMARK 465 HIS B 242 \ REMARK 465 HIS B 243 \ REMARK 465 HIS B 244 \ REMARK 465 HIS B 245 \ REMARK 465 HIS B 246 \ REMARK 465 HIS B 247 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 GLN A 1 CG CD OE1 NE2 \ REMARK 470 SER A 33 OG \ REMARK 470 TYR A 101 CG CD1 CD2 CE1 CE2 CZ OH \ REMARK 470 ASP A 102 CG OD1 OD2 \ REMARK 470 TYR A 106 CG CD1 CD2 CE1 CE2 CZ OH \ REMARK 470 GLN B 1 CG CD OE1 NE2 \ REMARK 470 SER B 33 OG \ REMARK 470 TYR B 101 CG CD1 CD2 CE1 CE2 CZ OH \ REMARK 470 ASP B 102 CG OD1 OD2 \ REMARK 470 SER B 127 OG \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 O SER B 150 O ILE B 154 2.11 \ REMARK 500 O HOH B 330 O HOH B 407 2.18 \ REMARK 500 O HOH B 416 O HOH B 435 2.19 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 ALA A 53 -79.21 -57.27 \ REMARK 500 SER A 112 104.14 -26.95 \ REMARK 500 ASN A 153 -90.89 -104.89 \ REMARK 500 VAL A 177 -57.26 71.44 \ REMARK 500 LEU A 204 127.60 -38.37 \ REMARK 500 SER B 56 50.79 -99.90 \ REMARK 500 SER B 112 107.28 -19.13 \ REMARK 500 ASN B 153 -99.15 -116.34 \ REMARK 500 VAL B 177 -42.13 62.59 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 525 \ REMARK 525 SOLVENT \ REMARK 525 \ REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT \ REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST \ REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT \ REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE \ REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; \ REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE \ REMARK 525 NUMBER; I=INSERTION CODE): \ REMARK 525 \ REMARK 525 M RES CSSEQI \ REMARK 525 HOH A 462 DISTANCE = 6.55 ANGSTROMS \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 2A9N RELATED DB: PDB \ DBREF 2A9M A 1 247 PDB 2A9M 2A9M 1 247 \ DBREF 2A9M B 1 247 PDB 2A9M 2A9M 1 247 \ SEQRES 1 A 264 GLN VAL GLN LEU VAL GLU SER GLY GLY ASN LEU VAL GLN \ SEQRES 2 A 264 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY \ SEQRES 3 A 264 PHE THR PHE GLY SER PHE SER MET SER TRP VAL ARG GLN \ SEQRES 4 A 264 ALA PRO GLY GLY GLY LEU GLU TRP VAL ALA GLY LEU SER \ SEQRES 5 A 264 ALA ARG SER SER LEU THR HIS TYR ALA ASP SER VAL LYS \ SEQRES 6 A 264 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER \ SEQRES 7 A 264 VAL TYR LEU GLN MET ASN SER LEU ARG VAL GLU ASP THR \ SEQRES 8 A 264 ALA VAL TYR TYR CYS ALA ARG ARG SER TYR ASP SER SER \ SEQRES 9 A 264 GLY TYR TRP GLY HIS PHE TYR SER TYR MET ASP VAL TRP \ SEQRES 10 A 264 GLY GLN GLY THR LEU VAL THR VAL SER SER GLY GLY GLY \ SEQRES 11 A 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLN \ SEQRES 12 A 264 SER VAL LEU THR GLN PRO SER SER VAL SER ALA ALA PRO \ SEQRES 13 A 264 GLY GLN LYS VAL THR ILE SER CYS SER GLY SER THR SER \ SEQRES 14 A 264 ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN GLN HIS \ SEQRES 15 A 264 PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP VAL SER \ SEQRES 16 A 264 LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER \ SEQRES 17 A 264 LYS SER GLY ASN SER ALA SER LEU ASP ILE SER GLY LEU \ SEQRES 18 A 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP \ SEQRES 19 A 264 ASP ASP SER LEU SER GLU PHE LEU PHE GLY THR GLY THR \ SEQRES 20 A 264 LYS LEU THR VAL LEU GLY ALA SER GLY ALA ASP HIS HIS \ SEQRES 21 A 264 HIS HIS HIS HIS \ SEQRES 1 B 264 GLN VAL GLN LEU VAL GLU SER GLY GLY ASN LEU VAL GLN \ SEQRES 2 B 264 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY \ SEQRES 3 B 264 PHE THR PHE GLY SER PHE SER MET SER TRP VAL ARG GLN \ SEQRES 4 B 264 ALA PRO GLY GLY GLY LEU GLU TRP VAL ALA GLY LEU SER \ SEQRES 5 B 264 ALA ARG SER SER LEU THR HIS TYR ALA ASP SER VAL LYS \ SEQRES 6 B 264 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER \ SEQRES 7 B 264 VAL TYR LEU GLN MET ASN SER LEU ARG VAL GLU ASP THR \ SEQRES 8 B 264 ALA VAL TYR TYR CYS ALA ARG ARG SER TYR ASP SER SER \ SEQRES 9 B 264 GLY TYR TRP GLY HIS PHE TYR SER TYR MET ASP VAL TRP \ SEQRES 10 B 264 GLY GLN GLY THR LEU VAL THR VAL SER SER GLY GLY GLY \ SEQRES 11 B 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLN \ SEQRES 12 B 264 SER VAL LEU THR GLN PRO SER SER VAL SER ALA ALA PRO \ SEQRES 13 B 264 GLY GLN LYS VAL THR ILE SER CYS SER GLY SER THR SER \ SEQRES 14 B 264 ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN GLN HIS \ SEQRES 15 B 264 PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP VAL SER \ SEQRES 16 B 264 LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER \ SEQRES 17 B 264 LYS SER GLY ASN SER ALA SER LEU ASP ILE SER GLY LEU \ SEQRES 18 B 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP \ SEQRES 19 B 264 ASP ASP SER LEU SER GLU PHE LEU PHE GLY THR GLY THR \ SEQRES 20 B 264 LYS LEU THR VAL LEU GLY ALA SER GLY ALA ASP HIS HIS \ SEQRES 21 B 264 HIS HIS HIS HIS \ FORMUL 3 HOH *315(H2 O) \ HELIX 1 1 GLN A 205 GLU A 209 5 5 \ HELIX 2 2 THR A 28 PHE A 32 5 5 \ HELIX 3 3 ARG A 87 THR A 91 5 5 \ HELIX 4 4 TYR A 101 SER A 104 5 4 \ HELIX 5 5 TRP A 107 SER A 112 1 6 \ HELIX 6 6 GLN B 205 GLU B 209 5 5 \ HELIX 7 7 THR B 28 PHE B 32 5 5 \ HELIX 8 8 ARG B 87 THR B 91 5 5 \ HELIX 9 9 TYR B 101 GLY B 105 5 5 \ HELIX 10 10 TRP B 107 SER B 112 1 6 \ SHEET 1 A 5 SER A 134 SER A 136 0 \ SHEET 2 A 5 THR A 230 THR A 233 1 O LYS A 231 N VAL A 135 \ SHEET 3 A 5 ALA A 210 ASP A 218 -1 N ALA A 210 O LEU A 232 \ SHEET 4 A 5 SER A 160 GLN A 164 -1 N TYR A 162 O TYR A 213 \ SHEET 5 A 5 LYS A 171 ILE A 174 -1 O LYS A 171 N GLN A 163 \ SHEET 1 B 4 SER A 134 SER A 136 0 \ SHEET 2 B 4 THR A 230 THR A 233 1 O LYS A 231 N VAL A 135 \ SHEET 3 B 4 ALA A 210 ASP A 218 -1 N ALA A 210 O LEU A 232 \ SHEET 4 B 4 GLU A 223 PHE A 226 -1 O LEU A 225 N ALA A 216 \ SHEET 1 C 3 VAL A 143 SER A 148 0 \ SHEET 2 C 3 SER A 196 ILE A 201 -1 O ILE A 201 N VAL A 143 \ SHEET 3 C 3 PHE A 188 SER A 193 -1 N SER A 193 O SER A 196 \ SHEET 1 D 4 GLN A 3 SER A 7 0 \ SHEET 2 D 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 \ SHEET 3 D 4 SER A 78 MET A 83 -1 O MET A 83 N LEU A 18 \ SHEET 4 D 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 \ SHEET 1 E 6 LEU A 11 VAL A 12 0 \ SHEET 2 E 6 THR A 121 VAL A 125 1 O THR A 124 N VAL A 12 \ SHEET 3 E 6 ALA A 92 ARG A 99 -1 N TYR A 94 O THR A 121 \ SHEET 4 E 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 \ SHEET 5 E 6 LEU A 45 LEU A 51 -1 O ALA A 49 N TRP A 36 \ SHEET 6 E 6 THR A 58 TYR A 60 -1 O HIS A 59 N GLY A 50 \ SHEET 1 F 4 LEU A 11 VAL A 12 0 \ SHEET 2 F 4 THR A 121 VAL A 125 1 O THR A 124 N VAL A 12 \ SHEET 3 F 4 ALA A 92 ARG A 99 -1 N TYR A 94 O THR A 121 \ SHEET 4 F 4 MET A 114 TRP A 117 -1 O VAL A 116 N ARG A 98 \ SHEET 1 G 5 SER B 134 ALA B 137 0 \ SHEET 2 G 5 THR B 230 VAL B 234 1 O LYS B 231 N VAL B 135 \ SHEET 3 G 5 ALA B 210 ASP B 218 -1 N ALA B 210 O LEU B 232 \ SHEET 4 G 5 SER B 160 GLN B 164 -1 N TYR B 162 O TYR B 213 \ SHEET 5 G 5 LYS B 171 ILE B 174 -1 O MET B 173 N TRP B 161 \ SHEET 1 H 4 SER B 134 ALA B 137 0 \ SHEET 2 H 4 THR B 230 VAL B 234 1 O LYS B 231 N VAL B 135 \ SHEET 3 H 4 ALA B 210 ASP B 218 -1 N ALA B 210 O LEU B 232 \ SHEET 4 H 4 GLU B 223 PHE B 226 -1 O LEU B 225 N ALA B 216 \ SHEET 1 I 3 VAL B 143 SER B 148 0 \ SHEET 2 I 3 SER B 196 ILE B 201 -1 O ILE B 201 N VAL B 143 \ SHEET 3 I 3 PHE B 188 SER B 193 -1 N SER B 193 O SER B 196 \ SHEET 1 J 4 GLN B 3 SER B 7 0 \ SHEET 2 J 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 \ SHEET 3 J 4 SER B 78 MET B 83 -1 O MET B 83 N LEU B 18 \ SHEET 4 J 4 PHE B 68 ASP B 73 -1 N ASP B 73 O SER B 78 \ SHEET 1 K 6 LEU B 11 VAL B 12 0 \ SHEET 2 K 6 THR B 121 VAL B 125 1 O THR B 124 N VAL B 12 \ SHEET 3 K 6 ALA B 92 ARG B 99 -1 N ALA B 92 O VAL B 123 \ SHEET 4 K 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 \ SHEET 5 K 6 GLU B 46 LEU B 51 -1 O GLU B 46 N ARG B 38 \ SHEET 6 K 6 THR B 58 TYR B 60 -1 O HIS B 59 N GLY B 50 \ SHEET 1 L 4 LEU B 11 VAL B 12 0 \ SHEET 2 L 4 THR B 121 VAL B 125 1 O THR B 124 N VAL B 12 \ SHEET 3 L 4 ALA B 92 ARG B 99 -1 N ALA B 92 O VAL B 123 \ SHEET 4 L 4 MET B 114 TRP B 117 -1 O VAL B 116 N ARG B 98 \ SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 \ SSBOND 2 CYS A 147 CYS A 214 1555 1555 2.05 \ SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.06 \ SSBOND 4 CYS B 147 CYS B 214 1555 1555 2.03 \ CRYST1 50.900 73.500 70.700 90.00 97.11 90.00 P 1 21 1 4 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.019646 0.000000 0.002451 0.00000 \ SCALE2 0.000000 0.013605 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.014254 0.00000 \ TER 1745 VAL A 234 \ TER 3510 LEU B 235 \ CONECT 151 718 \ CONECT 718 151 \ CONECT 1083 1592 \ CONECT 1592 1083 \ CONECT 1896 2463 \ CONECT 2463 1896 \ CONECT 2840 3349 \ CONECT 3349 2840 \ MASTER 375 0 0 10 52 0 0 6 3823 2 8 42 \ END \ """, "chainI") cmd.hide("all") cmd.color('grey70', "chainI") cmd.show('ribbon', "chainI") cmd.select("e2a9mI1", "c. I & i. 1-148") cmd.center("e2a9mI1", state=0, origin=1) cmd.zoom("e2a9mI1", animate=-1) cmd.show_as('cartoon', "e2a9mI1") cmd.spectrum('count', 'rainbow', "e2a9mI1") cmd.disable("e2a9mI1")