cmd.read_pdbstr("""\ HEADER RIBOSOMAL PROTEIN/RNA 29-SEP-08 3EP2 \ TITLE MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE \ TITLE 2 REVEALED BY CRYO-EM \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: ELONGATION FACTOR TU; \ COMPND 3 CHAIN: X; \ COMPND 4 SYNONYM: EF-TU, P-43; \ COMPND 5 MOL_ID: 2; \ COMPND 6 MOLECULE: 30S RIBOSOMAL PROTEIN S12; \ COMPND 7 CHAIN: L; \ COMPND 8 MOL_ID: 3; \ COMPND 9 MOLECULE: 50S RIBOSOMAL PROTEIN L11; \ COMPND 10 CHAIN: I; \ COMPND 11 MOL_ID: 4; \ COMPND 12 MOLECULE: TRNA; \ COMPND 13 CHAIN: Y; \ COMPND 14 MOL_ID: 5; \ COMPND 15 MOLECULE: FRAGMENT H18 OF THE 16S RRNA; \ COMPND 16 CHAIN: A; \ COMPND 17 MOL_ID: 6; \ COMPND 18 MOLECULE: FRAGMENT H44 OF THE 16S RRNA; \ COMPND 19 CHAIN: C; \ COMPND 20 MOL_ID: 7; \ COMPND 21 MOLECULE: FRAGMENT H43-44 OF THE 23S RRNA; \ COMPND 22 CHAIN: B; \ COMPND 23 MOL_ID: 8; \ COMPND 24 MOLECULE: FRAGMENT H95 OF THE 23S RRNA; \ COMPND 25 CHAIN: D; \ COMPND 26 MOL_ID: 9; \ COMPND 27 MOLECULE: FRAGMENT H69 OF THE 23S RRNA; \ COMPND 28 CHAIN: E \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 3 ORGANISM_TAXID: 83333; \ SOURCE 4 MOL_ID: 2; \ SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 6 ORGANISM_TAXID: 83333; \ SOURCE 7 MOL_ID: 3; \ SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 9 ORGANISM_TAXID: 83333; \ SOURCE 10 MOL_ID: 4; \ SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 12 ORGANISM_TAXID: 83333; \ SOURCE 13 MOL_ID: 5; \ SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 15 ORGANISM_TAXID: 83333; \ SOURCE 16 MOL_ID: 6; \ SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 18 ORGANISM_TAXID: 83333; \ SOURCE 19 MOL_ID: 7; \ SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 21 ORGANISM_TAXID: 83333; \ SOURCE 22 MOL_ID: 8; \ SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 24 ORGANISM_TAXID: 83333; \ SOURCE 25 MOL_ID: 9; \ SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; \ SOURCE 27 ORGANISM_TAXID: 83333 \ KEYWDS PROTEIN TRANSLATION, TERNARY COMPLEX, A/T-TRNA, AUTOMATED DATA \ KEYWDS 2 COLLECTION, ANTIBIOTIC RESISTANCE, ELONGATION FACTOR, GTP-BINDING, \ KEYWDS 3 MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN \ KEYWDS 4 BIOSYNTHESIS, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, \ KEYWDS 5 RRNA-BINDING, TRNA-BINDING, RIBOSOMAL PROTEIN-RNA COMPLEX \ EXPDTA ELECTRON MICROSCOPY \ MDLTYP CA ATOMS ONLY, CHAIN X, L, I; P ATOMS ONLY, CHAIN Y, A, C, B, D, E \ AUTHOR J.FRANK,W.LI,X.AGIRREZABALA \ REVDAT 6 21-FEB-24 3EP2 1 REMARK \ REVDAT 5 18-JUL-18 3EP2 1 REMARK \ REVDAT 4 30-MAY-12 3EP2 1 REMARK VERSN \ REVDAT 3 06-JAN-09 3EP2 1 REMARK \ REVDAT 2 30-DEC-08 3EP2 1 JRNL \ REVDAT 1 16-DEC-08 3EP2 0 \ JRNL AUTH W.LI,X.AGIRREZABALA,J.LEI,L.BOUAKAZ,J.L.BRUNELLE, \ JRNL AUTH 2 R.F.ORTIZ-MEOZ,R.GREEN,S.SANYAL,M.EHRENBERG,J.FRANK \ JRNL TITL RECOGNITION OF AMINOACYL-TRNA: A COMMON MOLECULAR MECHANISM \ JRNL TITL 2 REVEALED BY CRYO-EM. \ JRNL REF EMBO J. V. 27 3322 2008 \ JRNL REFN ISSN 0261-4189 \ JRNL PMID 19020518 \ JRNL DOI 10.1038/EMBOJ.2008.243 \ REMARK 1 \ REMARK 1 REFERENCE 1 \ REMARK 1 AUTH M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, \ REMARK 1 AUTH 2 P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK \ REMARK 1 TITL INCORPORATION OF AMINOACYL-TRNA INTO THE RIBOSOME AS SEEN BY \ REMARK 1 TITL 2 CRYO-ELECTRON MICROSCOPY \ REMARK 1 REF NAT. STRUCT. MOLEC. BIOL. V. 10 899 2003 \ REMARK 1 DOI 10.1038/NSB1003 \ REMARK 2 \ REMARK 2 RESOLUTION. 9.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : RSREF, SPIDER \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : 2AVY \ REMARK 3 REFINEMENT SPACE : REAL \ REMARK 3 REFINEMENT PROTOCOL : OTHER \ REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : METHOD--SEE METHOD IN THE CITATION REFINEMENT \ REMARK 3 PROTOCOL--AUTO \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.000 \ REMARK 3 NUMBER OF PARTICLES : 75996 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL \ REMARK 3 \ REMARK 3 OTHER DETAILS: NULL \ REMARK 4 \ REMARK 4 3EP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-08. \ REMARK 100 THE DEPOSITION ID IS D_1000049597. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : NULL \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : RIBOSOME IN PRE-ACCOMMODATED \ REMARK 245 STATE \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL \ REMARK 245 SAMPLE SUPPORT DETAILS : NULL \ REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL \ REMARK 245 SAMPLE BUFFER : NULL \ REMARK 245 PH : 7.50 \ REMARK 245 SAMPLE DETAILS : A/T-TRNA(PHE), EF-TU, L11, S12, \ REMARK 245 FRAGMENTS H44 AND H18 FROM THE 16S RRNA, FRAGMENTS H43-H44, H69, \ REMARK 245 AND H95 FROM THE 23S RRNA \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : 01-JUL-02 \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : NULL \ REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 \ REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM \ REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 NOMINAL CS : NULL \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 50000 \ REMARK 245 CALIBRATED MAGNIFICATION : 49650 \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : NULL \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, L, I, Y, A, C, B, D, E \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 2AVY RELATED DB: PDB \ REMARK 900 COORDINATES FOR INITIAL INPUT MODEL FOR RSREF \ REMARK 900 RELATED ID: 2AW4 RELATED DB: PDB \ REMARK 900 COORDINATES FOR INITIAL INPUT MODEL FOR RSREF \ REMARK 900 RELATED ID: 1QZA RELATED DB: PDB \ REMARK 900 COORDINATES FOR INITIAL INPUT MODEL FOR RSREF \ REMARK 900 RELATED ID: 1OB2 RELATED DB: PDB \ REMARK 900 COORDINATES FOR INITIAL INPUT MODEL FOR RSREF \ REMARK 900 RELATED ID: 3EQ3 RELATED DB: PDB \ REMARK 900 MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE \ REMARK 900 REVEALED BY CRYO-EM \ REMARK 900 RELATED ID: 3EQ4 RELATED DB: PDB \ REMARK 900 MODEL OF TRNA(LEU)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE \ REMARK 900 REVEALED BY CRYO-EM \ REMARK 900 RELATED ID: EMD-1564 RELATED DB: EMDB \ REMARK 900 RELATED ID: EMD-1565 RELATED DB: EMDB \ REMARK 900 RELATED ID: EMD-1055 RELATED DB: EMDB \ DBREF 3EP2 X 1 393 UNP P0A6N1 EFTU_ECOLI 2 394 \ DBREF 3EP2 L 1 123 UNP P0A7S3 RS12_ECOLI 2 124 \ DBREF 3EP2 I 1 141 UNP P0A7J7 RL11_ECOLI 2 142 \ DBREF 3EP2 Y 2 75 PDB 3EP2 3EP2 2 75 \ DBREF 3EP2 A 526 534 PDB 3EP2 3EP2 526 534 \ DBREF 3EP2 C 1487 1497 PDB 3EP2 3EP2 1487 1497 \ DBREF 3EP2 B 1054 1101 PDB 3EP2 3EP2 1054 1101 \ DBREF 3EP2 D 2647 2674 PDB 3EP2 3EP2 2647 2674 \ DBREF 3EP2 E 1907 1923 PDB 3EP2 3EP2 1907 1923 \ SEQRES 1 X 393 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN \ SEQRES 2 X 393 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR \ SEQRES 3 X 393 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR \ SEQRES 4 X 393 GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA \ SEQRES 5 X 393 PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER \ SEQRES 6 X 393 HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS \ SEQRES 7 X 393 VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET \ SEQRES 8 X 393 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL \ SEQRES 9 X 393 VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU \ SEQRES 10 X 393 HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE \ SEQRES 11 X 393 ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU \ SEQRES 12 X 393 GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU \ SEQRES 13 X 393 LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE \ SEQRES 14 X 393 VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA \ SEQRES 15 X 393 GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU \ SEQRES 16 X 393 ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS \ SEQRES 17 X 393 PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER \ SEQRES 18 X 393 GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY \ SEQRES 19 X 393 ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE \ SEQRES 20 X 393 LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET \ SEQRES 21 X 393 PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN \ SEQRES 22 X 393 VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE \ SEQRES 23 X 393 GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS \ SEQRES 24 X 393 PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER \ SEQRES 25 X 393 LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY \ SEQRES 26 X 393 TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR \ SEQRES 27 X 393 GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET \ SEQRES 28 X 393 PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS \ SEQRES 29 X 393 PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG \ SEQRES 30 X 393 GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS \ SEQRES 31 X 393 VAL LEU SER \ SEQRES 1 L 123 ALA THR VAL ASN GLN LEU VAL ARG LYS PRO ARG ALA ARG \ SEQRES 2 L 123 LYS VAL ALA LYS SER ASN VAL PRO ALA LEU GLU ALA CYS \ SEQRES 3 L 123 PRO GLN LYS ARG GLY VAL CYS THR ARG VAL TYR THR THR \ SEQRES 4 L 123 THR PRO LYS LYS PRO ASN SER ALA LEU ARG LYS VAL CYS \ SEQRES 5 L 123 ARG VAL ARG LEU THR ASN GLY PHE GLU VAL THR SER TYR \ SEQRES 6 L 123 ILE GLY GLY GLU GLY HIS ASN LEU GLN GLU HIS SER VAL \ SEQRES 7 L 123 ILE LEU ILE ARG GLY GLY ARG VAL LYS ASP LEU PRO GLY \ SEQRES 8 L 123 VAL ARG TYR HIS THR VAL ARG GLY ALA LEU ASP CYS SER \ SEQRES 9 L 123 GLY VAL LYS ASP ARG LYS GLN ALA ARG SER LYS TYR GLY \ SEQRES 10 L 123 VAL LYS ARG PRO LYS ALA \ SEQRES 1 I 141 ALA LYS LYS VAL GLN ALA TYR VAL LYS LEU GLN VAL ALA \ SEQRES 2 I 141 ALA GLY MET ALA ASN PRO SER PRO PRO VAL GLY PRO ALA \ SEQRES 3 I 141 LEU GLY GLN GLN GLY VAL ASN ILE MET GLU PHE CYS LYS \ SEQRES 4 I 141 ALA PHE ASN ALA LYS THR ASP SER ILE GLU LYS GLY LEU \ SEQRES 5 I 141 PRO ILE PRO VAL VAL ILE THR VAL TYR ALA ASP ARG SER \ SEQRES 6 I 141 PHE THR PHE VAL THR LYS THR PRO PRO ALA ALA VAL LEU \ SEQRES 7 I 141 LEU LYS LYS ALA ALA GLY ILE LYS SER GLY SER GLY LYS \ SEQRES 8 I 141 PRO ASN LYS ASP LYS VAL GLY LYS ILE SER ARG ALA GLN \ SEQRES 9 I 141 LEU GLN GLU ILE ALA GLN THR LYS ALA ALA ASP MET THR \ SEQRES 10 I 141 GLY ALA ASP ILE GLU ALA MET THR ARG SER ILE GLU GLY \ SEQRES 11 I 141 THR ALA ARG SER MET GLY LEU VAL VAL GLU ASP \ SEQRES 1 Y 74 C G G A U U U A G C U C A \ SEQRES 2 Y 74 G U U G G G A G A G C G C \ SEQRES 3 Y 74 C A G A C U G A A G A U C \ SEQRES 4 Y 74 U G G A G G U C C U G U G \ SEQRES 5 Y 74 U U C G A U C C A C A G A \ SEQRES 6 Y 74 A U U C G C A C C \ SEQRES 1 A 9 C G C G G U A A U \ SEQRES 1 C 11 G G G C G A A G U C G \ SEQRES 1 B 48 A G G A U G U U G G C U U \ SEQRES 2 B 48 A G A A G C A G C C A U C \ SEQRES 3 B 48 A U U U A A A G A A A G C \ SEQRES 4 B 48 G U A A U A G C U \ SEQRES 1 D 28 U G C U C C U A G U A C G \ SEQRES 2 D 28 A G A G G A C C G G A G U \ SEQRES 3 D 28 G G \ SEQRES 1 E 17 G C C G U A A C U A U A A \ SEQRES 2 E 17 C G G U \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ TER 394 SER X 393 \ ATOM 395 CA ALA L 1 -29.070 61.604 28.387 1.00 15.00 C \ ATOM 396 CA THR L 2 -27.634 64.647 30.161 1.00 15.00 C \ ATOM 397 CA VAL L 3 -25.778 67.687 28.804 1.00 15.00 C \ ATOM 398 CA ASN L 4 -22.539 66.241 30.178 1.00 15.00 C \ ATOM 399 CA GLN L 5 -23.237 62.788 28.745 1.00 15.00 C \ ATOM 400 CA LEU L 6 -24.067 64.585 25.501 1.00 15.00 C \ ATOM 401 CA VAL L 7 -21.023 66.868 25.381 1.00 15.00 C \ ATOM 402 CA ARG L 8 -18.930 63.692 25.419 1.00 15.00 C \ ATOM 403 CA LYS L 9 -20.862 61.329 23.135 1.00 15.00 C \ ATOM 404 CA PRO L 10 -23.645 63.395 21.461 1.00 15.00 C \ ATOM 405 CA ARG L 11 -26.473 62.008 19.327 1.00 15.00 C \ ATOM 406 CA ALA L 12 -25.241 59.725 16.540 1.00 15.00 C \ ATOM 407 CA ARG L 13 -26.773 59.901 13.059 1.00 15.00 C \ ATOM 408 CA LYS L 14 -27.700 56.860 10.962 1.00 15.00 C \ ATOM 409 CA VAL L 15 -26.096 56.013 7.610 1.00 15.00 C \ ATOM 410 CA ALA L 16 -29.190 55.696 5.414 1.00 15.00 C \ ATOM 411 CA LYS L 17 -28.892 52.389 3.563 1.00 15.00 C \ ATOM 412 CA SER L 18 -30.146 52.874 0.001 1.00 15.00 C \ ATOM 413 CA ASN L 19 -31.323 49.452 -1.165 1.00 15.00 C \ ATOM 414 CA VAL L 20 -29.821 49.656 -4.664 1.00 15.00 C \ ATOM 415 CA PRO L 21 -26.554 48.239 -6.071 1.00 15.00 C \ ATOM 416 CA ALA L 22 -26.866 50.316 -9.242 1.00 15.00 C \ ATOM 417 CA LEU L 23 -26.404 53.408 -7.079 1.00 15.00 C \ ATOM 418 CA GLU L 24 -24.041 56.004 -8.529 1.00 15.00 C \ ATOM 419 CA ALA L 25 -26.978 58.296 -7.737 1.00 15.00 C \ ATOM 420 CA CYS L 26 -28.655 57.724 -11.098 1.00 15.00 C \ ATOM 421 CA PRO L 27 -32.274 57.570 -12.346 1.00 15.00 C \ ATOM 422 CA GLN L 28 -31.365 54.538 -14.458 1.00 15.00 C \ ATOM 423 CA LYS L 29 -28.462 52.400 -15.688 1.00 15.00 C \ ATOM 424 CA ARG L 30 -27.705 50.563 -18.939 1.00 15.00 C \ ATOM 425 CA GLY L 31 -27.351 46.794 -19.038 1.00 15.00 C \ ATOM 426 CA VAL L 32 -26.870 43.862 -21.408 1.00 15.00 C \ ATOM 427 CA CYS L 33 -29.203 41.140 -20.112 1.00 15.00 C \ ATOM 428 CA THR L 34 -27.617 37.801 -19.188 1.00 15.00 C \ ATOM 429 CA ARG L 35 -30.777 35.747 -19.701 1.00 15.00 C \ ATOM 430 CA VAL L 36 -34.568 35.740 -19.379 1.00 15.00 C \ ATOM 431 CA TYR L 37 -36.046 33.916 -16.382 1.00 15.00 C \ ATOM 432 CA THR L 38 -39.576 33.113 -15.238 1.00 15.00 C \ ATOM 433 CA THR L 39 -39.138 32.536 -11.498 1.00 15.00 C \ ATOM 434 CA THR L 40 -42.085 31.955 -9.168 1.00 15.00 C \ ATOM 435 CA PRO L 41 -43.382 34.474 -6.568 1.00 15.00 C \ ATOM 436 CA LYS L 42 -43.527 34.136 -2.781 1.00 15.00 C \ ATOM 437 CA LYS L 43 -45.938 32.101 -0.659 1.00 15.00 C \ ATOM 438 CA PRO L 44 -48.945 34.479 -0.732 1.00 15.00 C \ ATOM 439 CA ASN L 45 -49.046 34.801 -4.528 1.00 15.00 C \ ATOM 440 CA SER L 46 -48.689 32.467 -7.501 1.00 15.00 C \ ATOM 441 CA ALA L 47 -48.161 32.665 -11.277 1.00 15.00 C \ ATOM 442 CA LEU L 48 -44.683 32.868 -12.810 1.00 15.00 C \ ATOM 443 CA ARG L 49 -43.346 36.373 -13.476 1.00 15.00 C \ ATOM 444 CA LYS L 50 -40.635 37.431 -15.930 1.00 15.00 C \ ATOM 445 CA VAL L 51 -37.185 38.612 -14.836 1.00 15.00 C \ ATOM 446 CA CYS L 52 -33.620 38.771 -16.154 1.00 15.00 C \ ATOM 447 CA ARG L 53 -30.039 39.164 -14.936 1.00 15.00 C \ ATOM 448 CA VAL L 54 -28.444 42.405 -16.115 1.00 15.00 C \ ATOM 449 CA ARG L 55 -24.749 43.194 -16.556 1.00 15.00 C \ ATOM 450 CA LEU L 56 -24.921 46.895 -15.659 1.00 15.00 C \ ATOM 451 CA THR L 57 -22.394 49.227 -17.288 1.00 15.00 C \ ATOM 452 CA ASN L 58 -20.619 49.445 -13.930 1.00 15.00 C \ ATOM 453 CA GLY L 59 -20.116 45.685 -13.882 1.00 15.00 C \ ATOM 454 CA PHE L 60 -22.548 45.321 -10.981 1.00 15.00 C \ ATOM 455 CA GLU L 61 -24.729 42.444 -12.163 1.00 15.00 C \ ATOM 456 CA VAL L 62 -28.348 42.232 -11.016 1.00 15.00 C \ ATOM 457 CA THR L 63 -31.729 40.855 -12.072 1.00 15.00 C \ ATOM 458 CA SER L 64 -34.329 43.391 -13.192 1.00 15.00 C \ ATOM 459 CA TYR L 65 -38.095 42.973 -13.477 1.00 15.00 C \ ATOM 460 CA ILE L 66 -39.657 43.085 -16.942 1.00 15.00 C \ ATOM 461 CA GLY L 67 -43.166 44.298 -16.146 1.00 15.00 C \ ATOM 462 CA GLY L 68 -45.872 44.608 -18.772 1.00 15.00 C \ ATOM 463 CA GLU L 69 -48.366 42.259 -20.416 1.00 15.00 C \ ATOM 464 CA GLY L 70 -45.918 41.125 -23.076 1.00 15.00 C \ ATOM 465 CA HIS L 71 -42.194 40.457 -22.771 1.00 15.00 C \ ATOM 466 CA ASN L 72 -39.836 40.660 -25.756 1.00 15.00 C \ ATOM 467 CA LEU L 73 -36.245 40.661 -24.513 1.00 15.00 C \ ATOM 468 CA GLN L 74 -33.369 38.463 -25.669 1.00 15.00 C \ ATOM 469 CA GLU L 75 -30.332 36.876 -24.008 1.00 15.00 C \ ATOM 470 CA HIS L 76 -28.219 39.720 -25.409 1.00 15.00 C \ ATOM 471 CA SER L 77 -30.647 42.610 -25.895 1.00 15.00 C \ ATOM 472 CA VAL L 78 -29.678 45.875 -24.199 1.00 15.00 C \ ATOM 473 CA ILE L 79 -32.163 47.172 -21.627 1.00 15.00 C \ ATOM 474 CA LEU L 80 -32.211 50.051 -19.139 1.00 15.00 C \ ATOM 475 CA ILE L 81 -32.620 49.462 -15.395 1.00 15.00 C \ ATOM 476 CA ARG L 82 -34.715 51.952 -13.427 1.00 15.00 C \ ATOM 477 CA GLY L 83 -35.460 50.806 -9.887 1.00 15.00 C \ ATOM 478 CA GLY L 84 -38.505 50.108 -7.745 1.00 15.00 C \ ATOM 479 CA ARG L 85 -38.068 46.688 -6.158 1.00 15.00 C \ ATOM 480 CA VAL L 86 -40.623 43.878 -6.279 1.00 15.00 C \ ATOM 481 CA LYS L 87 -41.986 41.891 -3.334 1.00 15.00 C \ ATOM 482 CA ASP L 88 -43.068 38.535 -4.778 1.00 15.00 C \ ATOM 483 CA LEU L 89 -39.641 38.457 -6.441 1.00 15.00 C \ ATOM 484 CA PRO L 90 -36.788 38.594 -3.884 1.00 15.00 C \ ATOM 485 CA GLY L 91 -33.393 39.945 -4.894 1.00 15.00 C \ ATOM 486 CA VAL L 92 -35.251 41.471 -7.833 1.00 15.00 C \ ATOM 487 CA ARG L 93 -35.167 45.115 -6.754 1.00 15.00 C \ ATOM 488 CA TYR L 94 -35.154 46.605 -10.258 1.00 15.00 C \ ATOM 489 CA HIS L 95 -37.241 46.957 -13.417 1.00 15.00 C \ ATOM 490 CA THR L 96 -36.273 47.278 -17.086 1.00 15.00 C \ ATOM 491 CA VAL L 97 -37.403 50.533 -18.692 1.00 15.00 C \ ATOM 492 CA ARG L 98 -40.262 49.942 -21.123 1.00 15.00 C \ ATOM 493 CA GLY L 99 -39.570 51.482 -24.514 1.00 15.00 C \ ATOM 494 CA ALA L 100 -35.865 52.296 -24.310 1.00 15.00 C \ ATOM 495 CA LEU L 101 -32.531 51.089 -25.701 1.00 15.00 C \ ATOM 496 CA ASP L 102 -32.586 47.717 -27.468 1.00 15.00 C \ ATOM 497 CA CYS L 103 -35.691 46.586 -25.579 1.00 15.00 C \ ATOM 498 CA SER L 104 -39.330 46.643 -26.691 1.00 15.00 C \ ATOM 499 CA GLY L 105 -42.536 47.740 -25.007 1.00 15.00 C \ ATOM 500 CA VAL L 106 -46.020 46.492 -24.147 1.00 15.00 C \ ATOM 501 CA LYS L 107 -48.268 46.047 -27.178 1.00 15.00 C \ ATOM 502 CA ASP L 108 -51.892 47.079 -27.718 1.00 15.00 C \ ATOM 503 CA ARG L 109 -51.847 48.941 -24.388 1.00 15.00 C \ ATOM 504 CA LYS L 110 -54.102 52.005 -24.467 1.00 15.00 C \ ATOM 505 CA GLN L 111 -54.103 52.953 -20.781 1.00 15.00 C \ ATOM 506 CA ALA L 112 -51.159 54.473 -18.916 1.00 15.00 C \ ATOM 507 CA ARG L 113 -49.188 54.930 -22.139 1.00 15.00 C \ ATOM 508 CA SER L 114 -46.403 56.860 -20.395 1.00 15.00 C \ ATOM 509 CA LYS L 115 -45.509 53.729 -18.461 1.00 15.00 C \ ATOM 510 CA TYR L 116 -44.784 50.671 -20.606 1.00 15.00 C \ ATOM 511 CA GLY L 117 -44.105 50.861 -24.340 1.00 15.00 C \ ATOM 512 CA VAL L 118 -46.817 52.840 -26.135 1.00 15.00 C \ ATOM 513 CA LYS L 119 -47.089 56.291 -27.720 1.00 15.00 C \ ATOM 514 CA ARG L 120 -50.440 57.531 -29.069 1.00 15.00 C \ ATOM 515 CA PRO L 121 -52.423 54.543 -30.457 1.00 15.00 C \ ATOM 516 CA LYS L 122 -53.968 54.015 -33.893 1.00 15.00 C \ ATOM 517 CA ALA L 123 -56.058 57.108 -33.110 1.00 15.00 C \ TER 518 ALA L 123 \ TER 660 ASP I 141 \ TER 735 C Y 75 \ TER 745 U A 534 \ TER 757 G C1497 \ TER 806 U B1101 \ TER 835 G D2674 \ TER 853 U E1923 \ MASTER 123 0 0 0 0 0 0 6 844 9 0 69 \ END \ """, "chainL") cmd.hide("all") cmd.color('grey70', "chainL") cmd.show('ribbon', "chainL") cmd.select("e3ep2L1", "c. L & i. 1-123") cmd.center("e3ep2L1", state=0, origin=1) cmd.zoom("e3ep2L1", animate=-1) cmd.show_as('cartoon', "e3ep2L1") cmd.spectrum('count', 'rainbow', "e3ep2L1") cmd.disable("e3ep2L1")