HEADER HYDROLASE/HYDROLASE INHIBITOR 31-DEC-69 1DX5 TITLE Crystal structure of the thrombin-thrombomodulin complex COMPND MOL_ID: 2; COMPND 2 MOLECULE: Thrombomodulin; COMPND 3 CHAIN: I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: EGF-LIKE DOMAINS 4 - ; COMPND 6 ENGINEERED: YES; COMPND 7 ENZYMATICALLY DEGLYCOSYLATED (PNGASE F); EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS DBREF 1DX5 I 345 462 UNP P07204 TRBM_HUMAN 363 480 SEQRES 1 I 35 MET PHE CYS ASN GLN THR ALA CYS PRO ALA ASP CYS ASP SEQRES 2 I 35 PRO ASN THR GLN ALA SER CYS GLU CYS PRO GLU GLY TYR SEQRES 3 I 35 ILE LEU ASP ASP GLY PHE ILE CYS THR ATOM 1 N MET I 388 8.082 66.477 -33.277 1.00 13.36 ATOM 2 CA MET I 388 6.848 65.715 -33.425 1.00 12.69 ATOM 3 C MET I 388 5.575 66.476 -33.023 1.00 11.62 ATOM 4 O MET I 388 5.596 67.320 -32.127 1.00 11.86 ATOM 5 CB MET I 388 6.967 64.461 -32.542 1.00 14.09 ATOM 6 CG MET I 388 5.733 63.598 -32.473 1.00 18.69 ATOM 7 SD MET I 388 5.780 62.435 -31.101 1.00 16.86 ATOM 8 CE MET I 388 4.121 61.865 -31.158 1.00 20.92 ATOM 9 N PHE I 389 4.470 66.145 -33.685 1.00 9.37 ATOM 10 CA PHE I 389 3.169 66.713 -33.353 1.00 8.76 ATOM 11 C PHE I 389 2.164 65.565 -33.361 1.00 5.75 ATOM 12 O PHE I 389 2.461 64.483 -33.861 1.00 5.29 ATOM 13 CB PHE I 389 2.757 67.866 -34.307 1.00 6.79 ATOM 14 CG PHE I 389 2.347 67.428 -35.710 1.00 8.73 ATOM 15 CD1 PHE I 389 1.117 66.811 -35.943 1.00 5.13 ATOM 16 CD2 PHE I 389 3.168 67.689 -36.796 1.00 7.08 ATOM 17 CE1 PHE I 389 0.717 66.462 -37.230 1.00 10.83 ATOM 18 CE2 PHE I 389 2.777 67.345 -38.091 1.00 8.48 ATOM 19 CZ PHE I 389 1.548 66.729 -38.308 1.00 9.13 ATOM 20 N CYS I 390 1.016 65.767 -32.723 1.00 9.82 ATOM 21 CA CYS I 390 -0.039 64.755 -32.705 1.00 9.56 ATOM 22 C CYS I 390 -1.376 65.473 -32.532 1.00 9.76 ATOM 23 O CYS I 390 -1.480 66.401 -31.745 1.00 11.28 ATOM 24 CB CYS I 390 0.171 63.747 -31.564 1.00 9.96 ATOM 25 SG CYS I 390 -0.955 62.291 -31.592 1.00 8.64 ATOM 26 N ASN I 391 -2.382 65.076 -33.305 1.00 10.67 ATOM 27 CA ASN I 391 -3.703 65.698 -33.203 1.00 11.50 ATOM 28 C ASN I 391 -4.786 64.664 -32.928 1.00 10.43 ATOM 29 O ASN I 391 -5.962 64.924 -33.150 1.00 8.29 ATOM 30 CB ASN I 391 -4.051 66.458 -34.481 1.00 10.04 ATOM 31 CG ASN I 391 -2.976 67.579 -34.843 1.00 6.16 ATOM 32 OD1 ASN I 391 -2.888 68.516 -34.053 1.00 5.65 ATOM 33 ND2 ASN I 391 -2.269 67.470 -35.947 1.00 5.49 ATOM 34 N GLN I 392 -4.381 63.524 -32.380 1.00 13.07 ATOM 35 CA GLN I 392 -5.289 62.420 -32.074 1.00 14.94 ATOM 36 C GLN I 392 -5.119 61.976 -30.631 1.00 11.24 ATOM 37 O GLN I 392 -4.423 62.617 -29.868 1.00 12.26 ATOM 38 CB GLN I 392 -4.970 61.232 -32.976 1.00 19.18 ATOM 39 CG GLN I 392 -5.074 61.523 -34.452 1.00 27.99 ATOM 40 CD GLN I 392 -4.602 60.276 -35.311 1.00 31.60 ATOM 41 OE1 GLN I 392 -3.768 60.515 -36.184 1.00 32.98 ATOM 42 NE2 GLN I 392 -5.059 59.055 -35.019 1.00 35.66 ATOM 43 N THR I 393 -5.782 60.881 -30.273 1.00 12.32 ATOM 44 CA THR I 393 -5.707 60.295 -28.935 1.00 13.96 ATOM 45 C THR I 393 -4.261 59.854 -28.640 1.00 11.14 ATOM 46 O THR I 393 -3.746 60.029 -27.542 1.00 14.88 ATOM 47 CB THR I 393 -6.672 59.070 -28.824 1.00 15.06 ATOM 48 OG1 THR I 393 -8.023 59.538 -28.702 1.00 18.26 ATOM 49 CG2 THR I 393 -6.332 58.205 -27.601 1.00 23.23 ATOM 50 N ALA I 394 -3.602 59.310 -29.645 1.00 10.48 ATOM 51 CA ALA I 394 -2.234 58.853 -29.490 1.00 10.85 ATOM 52 C ALA I 394 -1.531 58.787 -30.836 1.00 10.96 ATOM 53 O ALA I 394 -2.177 58.745 -31.884 1.00 10.62 ATOM 54 CB ALA I 394 -2.213 57.487 -28.822 1.00 14.62 ATOM 55 N CYS I 395 -0.206 58.878 -30.786 1.00 9.89 ATOM 56 CA CYS I 395 0.662 58.790 -31.965 1.00 10.80 ATOM 57 C CYS I 395 1.946 58.170 -31.411 1.00 11.02 ATOM 58 O CYS I 395 2.230 58.304 -30.222 1.00 12.78 ATOM 59 CB CYS I 395 1.019 60.185 -32.523 1.00 13.55 ATOM 60 SG CYS I 395 -0.319 61.226 -33.198 1.00 12.13 ATOM 61 N PRO I 396 2.702 57.438 -32.239 1.00 8.42 ATOM 62 CA PRO I 396 3.954 56.827 -31.765 1.00 9.87 ATOM 63 C PRO I 396 4.904 57.921 -31.265 1.00 5.42 ATOM 64 O PRO I 396 4.938 59.008 -31.811 1.00 7.39 ATOM 65 CB PRO I 396 4.515 56.173 -33.032 1.00 4.43 ATOM 66 CG PRO I 396 3.265 55.810 -33.787 1.00 9.66 ATOM 67 CD PRO I 396 2.418 57.045 -33.631 1.00 7.53 ATOM 68 N ALA I 397 5.636 57.646 -30.197 1.00 9.45 ATOM 69 CA ALA I 397 6.579 58.625 -29.655 1.00 10.99 ATOM 70 C ALA I 397 7.792 58.803 -30.554 1.00 11.25 ATOM 71 O ALA I 397 8.131 57.936 -31.360 1.00 11.09 ATOM 72 CB ALA I 397 7.038 58.211 -28.253 1.00 12.85 ATOM 73 N ASP I 398 8.437 59.948 -30.420 1.00 10.50 ATOM 74 CA ASP I 398 9.624 60.217 -31.196 1.00 10.81 ATOM 75 C ASP I 398 10.806 59.672 -30.391 1.00 10.56 ATOM 76 O ASP I 398 11.298 60.342 -29.481 1.00 8.48 ATOM 77 CB ASP I 398 9.751 61.722 -31.426 1.00 11.23 ATOM 78 CG ASP I 398 11.095 62.109 -32.160 1.00 8.76 ATOM 79 OD1 ASP I 398 11.642 61.258 -32.885 1.00 13.74 ATOM 80 OD2 ASP I 398 11.548 63.247 -31.969 1.00 13.56 ATOM 81 N CYS I 399 11.219 58.437 -30.694 1.00 9.98 ATOM 82 CA CYS I 399 12.333 57.809 -29.979 1.00 12.68 ATOM 83 C CYS I 399 13.653 57.806 -30.745 1.00 12.72 ATOM 84 O CYS I 399 13.683 57.600 -31.961 1.00 13.82 ATOM 85 CB CYS I 399 11.968 56.384 -29.579 1.00 11.50 ATOM 86 SG CYS I 399 10.368 56.266 -28.724 1.00 13.97 ATOM 87 N ASP I 400 14.743 58.076 -30.033 1.00 13.55 ATOM 88 CA ASP I 400 16.066 58.103 -30.639 1.00 16.16 ATOM 89 C ASP I 400 16.693 56.709 -30.654 1.00 18.91 ATOM 90 O ASP I 400 16.973 56.141 -29.609 1.00 22.12 ATOM 91 CB ASP I 400 16.951 59.070 -29.861 1.00 20.37 ATOM 92 CG ASP I 400 18.396 59.284 -30.535 1.00 21.03 ATOM 93 OD1 ASP I 400 18.786 58.523 -31.441 1.00 22.76 ATOM 94 OD2 ASP I 400 19.092 60.214 -30.102 1.00 24.87 ATOM 95 N PRO I 401 16.907 56.131 -31.850 1.00 19.77 ATOM 96 CA PRO I 401 17.506 54.795 -31.910 1.00 21.05 ATOM 97 C PRO I 401 18.982 54.672 -31.494 1.00 23.25 ATOM 98 O PRO I 401 19.483 53.567 -31.334 1.00 22.95 ATOM 99 CB PRO I 401 17.225 54.343 -33.346 1.00 20.47 ATOM 100 CG PRO I 401 16.981 55.581 -34.083 1.00 18.65 ATOM 101 CD PRO I 401 16.316 56.508 -33.141 1.00 18.85 ATOM 102 N ASN I 402 19.648 55.803 -31.267 1.00 25.76 ATOM 103 CA ASN I 402 21.042 55.814 -30.811 1.00 30.49 ATOM 104 C ASN I 402 21.140 55.612 -29.302 1.00 33.00 ATOM 105 O ASN I 402 22.236 55.578 -28.732 1.00 34.99 ATOM 106 CB ASN I 402 21.724 57.129 -31.165 1.00 30.03 ATOM 107 CG ASN I 402 22.394 57.088 -32.598 1.00 31.96 ATOM 108 OD1 ASN I 402 22.412 58.152 -33.208 1.00 36.97 ATOM 109 ND2 ASN I 402 22.880 55.942 -33.068 1.00 32.49 ATOM 110 N THR I 403 19.983 55.528 -28.657 1.00 34.80 ATOM 111 CA THR I 403 19.908 55.325 -27.223 1.00 35.97 ATOM 112 C THR I 403 18.588 54.663 -26.897 1.00 35.54 ATOM 113 O THR I 403 17.520 55.232 -27.122 1.00 39.02 ATOM 114 CB THR I 403 20.057 56.652 -26.448 1.00 37.58 ATOM 115 OG1 THR I 403 19.638 56.458 -25.090 1.00 41.79 ATOM 116 CG2 THR I 403 19.243 57.766 -27.093 1.00 38.61 ATOM 117 N GLN I 404 18.672 53.454 -26.362 1.00 34.32 ATOM 118 CA GLN I 404 17.495 52.669 -26.002 1.00 33.55 ATOM 119 C GLN I 404 16.489 53.390 -25.089 1.00 29.70 ATOM 120 O GLN I 404 16.856 53.993 -24.080 1.00 28.10 ATOM 121 CB GLN I 404 17.940 51.342 -25.371 1.00 35.64 ATOM 122 CG GLN I 404 16.814 50.366 -25.035 1.00 39.30 ATOM 123 CD GLN I 404 17.369 48.926 -24.559 1.00 42.95 ATOM 124 OE1 GLN I 404 16.825 48.444 -23.564 1.00 45.16 ATOM 125 NE2 GLN I 404 18.354 48.336 -25.233 1.00 42.70 ATOM 126 N ALA I 405 15.230 53.371 -25.518 1.00 27.22 ATOM 127 CA ALA I 405 14.108 53.954 -24.790 1.00 24.58 ATOM 128 C ALA I 405 14.131 55.453 -24.488 1.00 20.52 ATOM 129 O ALA I 405 13.552 55.891 -23.494 1.00 21.76 ATOM 130 CB ALA I 405 13.852 53.152 -23.497 1.00 26.60 ATOM 131 N SER I 406 14.812 56.247 -25.301 1.00 16.01 ATOM 132 CA SER I 406 14.808 57.693 -25.065 1.00 16.18 ATOM 133 C SER I 406 13.791 58.276 -26.048 1.00 17.78 ATOM 134 O SER I 406 14.070 58.418 -27.253 1.00 16.35 ATOM 135 CB SER I 406 16.189 58.309 -25.286 1.00 15.67 ATOM 136 OG SER I 406 16.140 59.721 -25.111 1.00 15.35 ATOM 137 N CYS I 407 12.606 58.581 -25.529 1.00 17.44 ATOM 138 CA CYS I 407 11.511 59.090 -26.334 1.00 13.78 ATOM 139 C CYS I 407 11.001 60.476 -25.977 1.00 12.28 ATOM 140 O CYS I 407 11.063 60.900 -24.824 1.00 11.16 ATOM 141 CB CYS I 407 10.360 58.094 -26.287 1.00 12.05 ATOM 142 SG CYS I 407 10.835 56.399 -26.749 1.00 17.01 ATOM 143 N GLU I 408 10.442 61.148 -26.985 1.00 8.13 ATOM 144 CA GLU I 408 9.880 62.495 -26.851 1.00 10.32 ATOM 145 C GLU I 408 8.402 62.482 -27.240 1.00 8.55 ATOM 146 O GLU I 408 7.968 61.690 -28.069 1.00 8.71 ATOM 147 CB GLU I 408 10.590 63.488 -27.787 1.00 10.34 ATOM 148 CG GLU I 408 12.108 63.497 -27.725 1.00 18.70 ATOM 149 CD GLU I 408 12.688 64.046 -26.330 1.00 21.23 ATOM 150 OE1 GLU I 408 12.073 64.960 -25.729 1.00 22.11 ATOM 151 OE2 GLU I 408 13.746 63.539 -25.900 1.00 22.83 ATOM 152 N CYS I 409 7.635 63.376 -26.635 1.00 11.49 ATOM 153 CA CYS I 409 6.214 63.515 -26.928 1.00 11.64 ATOM 154 C CYS I 409 5.942 64.990 -27.012 1.00 9.95 ATOM 155 O CYS I 409 6.618 65.772 -26.347 1.00 10.59 ATOM 156 CB CYS I 409 5.342 62.957 -25.797 1.00 10.05 ATOM 157 SG CYS I 409 5.249 61.159 -25.709 1.00 8.91 ATOM 158 N PRO I 410 4.955 65.401 -27.836 1.00 11.39 ATOM 159 CA PRO I 410 4.656 66.835 -27.927 1.00 9.89 ATOM 160 C PRO I 410 4.001 67.314 -26.632 1.00 11.67 ATOM 161 O PRO I 410 3.662 66.503 -25.770 1.00 11.98 ATOM 162 CB PRO I 410 3.700 66.918 -29.118 1.00 8.10 ATOM 163 CG PRO I 410 3.102 65.568 -29.208 1.00 9.60 ATOM 164 CD PRO I 410 4.217 64.637 -28.859 1.00 9.52 ATOM 165 N GLU I 411 3.908 68.628 -26.455 1.00 14.12 ATOM 166 CA GLU I 411 3.282 69.187 -25.258 1.00 13.89 ATOM 167 C GLU I 411 1.835 68.687 -25.209 1.00 10.96 ATOM 168 O GLU I 411 1.185 68.573 -26.259 1.00 7.79 ATOM 169 CB GLU I 411 3.287 70.713 -25.332 1.00 18.08 ATOM 170 CG GLU I 411 4.673 71.342 -25.354 1.00 25.34 ATOM 171 CD GLU I 411 4.619 72.946 -25.479 0.00 22.75 ATOM 172 OE1 GLU I 411 5.043 73.474 -26.528 0.00 23.14 ATOM 173 OE2 GLU I 411 4.157 73.607 -24.524 0.00 23.45 ATOM 174 N GLY I 412 1.344 68.379 -24.007 1.00 6.99 ATOM 175 CA GLY I 412 -0.024 67.901 -23.857 1.00 3.93 ATOM 176 C GLY I 412 -0.170 66.398 -24.011 1.00 7.40 ATOM 177 O GLY I 412 -1.277 65.860 -23.913 1.00 5.53 ATOM 178 N TYR I 413 0.940 65.722 -24.298 1.00 7.67 ATOM 179 CA TYR I 413 0.949 64.270 -24.462 1.00 7.90 ATOM 180 C TYR I 413 1.919 63.661 -23.462 1.00 7.11 ATOM 181 O TYR I 413 2.837 64.321 -23.011 1.00 10.50 ATOM 182 CB TYR I 413 1.363 63.879 -25.890 1.00 7.94 ATOM 183 CG TYR I 413 0.284 64.089 -26.916 1.00 6.47 ATOM 184 CD1 TYR I 413 0.085 65.330 -27.506 1.00 7.47 ATOM 185 CD2 TYR I 413 -0.568 63.043 -27.275 1.00 7.62 ATOM 186 CE1 TYR I 413 -0.940 65.529 -28.433 1.00 6.79 ATOM 187 CE2 TYR I 413 -1.593 63.227 -28.196 1.00 8.98 ATOM 188 CZ TYR I 413 -1.771 64.472 -28.765 1.00 6.67 ATOM 189 OH TYR I 413 -2.783 64.657 -29.654 1.00 9.16 ATOM 190 N ILE I 414 1.703 62.404 -23.107 1.00 8.62 ATOM 191 CA ILE I 414 2.565 61.734 -22.157 1.00 8.41 ATOM 192 C ILE I 414 2.843 60.318 -22.660 1.00 7.79 ATOM 193 O ILE I 414 1.991 59.697 -23.282 1.00 10.95 ATOM 194 CB ILE I 414 1.930 61.760 -20.718 1.00 11.34 ATOM 195 CG1 ILE I 414 2.877 61.120 -19.692 1.00 11.46 ATOM 196 CG2 ILE I 414 0.548 61.071 -20.708 1.00 6.50 ATOM 197 CD1 ILE I 414 2.387 61.238 -18.256 1.00 11.66 ATOM 198 N LEU I 415 4.070 59.849 -22.460 1.00 10.10 ATOM 199 CA LEU I 415 4.476 58.516 -22.901 1.00 10.78 ATOM 200 C LEU I 415 3.620 57.450 -22.239 1.00 11.55 ATOM 201 O LEU I 415 3.323 57.529 -21.044 1.00 14.90 ATOM 202 CB LEU I 415 5.962 58.287 -22.616 1.00 9.98 ATOM 203 CG LEU I 415 6.650 57.130 -23.346 1.00 13.04 ATOM 204 CD1 LEU I 415 6.581 57.391 -24.838 1.00 11.17 ATOM 205 CD2 LEU I 415 8.118 56.995 -22.886 1.00 12.07 ATOM 206 N ASP I 416 3.229 56.456 -23.031 1.00 11.20 ATOM 207 CA ASP I 416 2.362 55.380 -22.583 1.00 11.32 ATOM 208 C ASP I 416 2.965 54.072 -23.082 1.00 13.98 ATOM 209 O ASP I 416 4.012 54.080 -23.729 1.00 14.05 ATOM 210 CB ASP I 416 0.966 55.582 -23.214 1.00 11.46 ATOM 211 CG ASP I 416 -0.210 54.797 -22.433 1.00 14.41 ATOM 212 OD1 ASP I 416 0.062 54.042 -21.476 1.00 13.54 ATOM 213 OD2 ASP I 416 -1.384 55.004 -22.789 1.00 19.18 ATOM 214 N ASP I 417 2.274 52.963 -22.811 1.00 11.60 ATOM 215 CA ASP I 417 2.709 51.639 -23.243 1.00 14.91 ATOM 216 C ASP I 417 2.954 51.532 -24.739 1.00 12.63 ATOM 217 O ASP I 417 2.205 52.086 -25.537 1.00 12.25 ATOM 218 CB ASP I 417 1.676 50.586 -22.851 1.00 18.19 ATOM 219 CG ASP I 417 1.754 50.209 -21.311 1.00 22.85 ATOM 220 OD1 ASP I 417 2.865 50.258 -20.756 1.00 25.32 ATOM 221 OD2 ASP I 417 0.710 49.877 -20.728 1.00 27.94 ATOM 222 N GLY I 418 3.981 50.768 -25.099 1.00 12.34 ATOM 223 CA GLY I 418 4.320 50.576 -26.495 1.00 10.75 ATOM 224 C GLY I 418 4.984 51.801 -27.080 1.00 13.40 ATOM 225 O GLY I 418 4.965 51.989 -28.297 1.00 15.35 ATOM 226 N PHE I 419 5.585 52.620 -26.214 1.00 12.27 ATOM 227 CA PHE I 419 6.280 53.843 -26.620 1.00 13.20 ATOM 228 C PHE I 419 5.375 54.724 -27.480 1.00 12.93 ATOM 229 O PHE I 419 5.737 55.177 -28.574 1.00 12.54 ATOM 230 CB PHE I 419 7.596 53.513 -27.334 1.00 15.53 ATOM 231 CG PHE I 419 8.557 52.715 -26.496 1.00 12.76 ATOM 232 CD1 PHE I 419 9.314 53.326 -25.517 1.00 11.15 ATOM 233 CD2 PHE I 419 8.689 51.346 -26.686 1.00 15.54 ATOM 234 CE1 PHE I 419 10.197 52.586 -24.736 1.00 14.67 ATOM 235 CE2 PHE I 419 9.568 50.596 -25.912 1.00 15.98 ATOM 236 CZ PHE I 419 10.320 51.218 -24.936 1.00 14.95 ATOM 237 N ILE I 420 4.183 54.973 -26.953 1.00 9.50 ATOM 238 CA ILE I 420 3.199 55.787 -27.646 1.00 12.97 ATOM 239 C ILE I 420 2.869 57.008 -26.817 1.00 9.55 ATOM 240 O ILE I 420 2.785 56.929 -25.606 1.00 12.39 ATOM 241 CB ILE I 420 1.893 54.993 -27.895 1.00 13.90 ATOM 242 CG1 ILE I 420 2.203 53.747 -28.718 1.00 17.07 ATOM 243 CG2 ILE I 420 0.906 55.836 -28.676 1.00 16.54 ATOM 244 CD1 ILE I 420 1.048 52.807 -28.842 1.00 24.94 ATOM 245 N CYS I 421 2.697 58.139 -27.480 1.00 10.80 ATOM 246 CA CYS I 421 2.348 59.375 -26.808 1.00 10.18 ATOM 247 C CYS I 421 0.833 59.467 -26.799 1.00 10.37 ATOM 248 O CYS I 421 0.197 59.458 -27.851 1.00 12.53 ATOM 249 CB CYS I 421 2.929 60.560 -27.571 1.00 11.60 ATOM 250 SG CYS I 421 4.741 60.602 -27.600 1.00 13.12 ATOM 251 N THR I 422 0.256 59.558 -25.611 1.00 13.08 ATOM 252 CA THR I 422 -1.193 59.642 -25.480 1.00 10.92 ATOM 253 C THR I 422 -1.598 61.014 -24.911 1.00 10.60 ATOM 254 O THR I 422 -0.863 61.623 -24.131 1.00 8.51 ATOM 255 CB THR I 422 -1.743 58.470 -24.622 1.00 10.24 ATOM 256 OG1 THR I 422 -3.178 58.515 -24.601 1.00 18.25 ATOM 257 CG2 THR I 422 -1.241 58.567 -23.210 1.00 15.24 TER