HEADER HYDROLASE/HYDROLASE INHIBITOR 20-DEC-99 1DX5 TITLE CRYSTAL STRUCTURE OF THE THROMBIN-THROMBOMODULIN COMPLEX COMPND MOL_ID: 3; COMPND 2 MOLECULE: THROMBOMODULIN; COMPND 3 CHAIN: I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: EGF-LIKE DOMAINS 4 - ; COMPND 6 ENGINEERED: YES; COMPND 7 ENZYMATICALLY DEGLYCOSYLATED (PNGASE F); EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS DBREF 1DX5 J 345 462 UNP P07204 TRBM_HUMAN 363 480 SEQRES 1 J 35 MET PHE CYS ASN GLN THR ALA CYS PRO ALA ASP CYS ASP SEQRES 2 J 35 PRO ASN THR GLN ALA SER CYS GLU CYS PRO GLU GLY TYR SEQRES 3 J 35 ILE LEU ASP ASP GLY PHE ILE CYS THR ATOM 1 N MET J 388 40.455 94.483 45.955 1.00 8.62 ATOM 2 CA MET J 388 41.405 93.557 45.360 1.00 10.37 ATOM 3 C MET J 388 41.484 93.637 43.822 1.00 9.95 ATOM 4 O MET J 388 40.514 94.012 43.149 1.00 6.33 ATOM 5 CB MET J 388 40.956 92.143 45.750 1.00 13.47 ATOM 6 CG MET J 388 41.816 91.011 45.274 1.00 17.67 ATOM 7 SD MET J 388 40.908 89.448 45.288 1.00 16.85 ATOM 8 CE MET J 388 41.850 88.563 44.031 1.00 18.92 ATOM 9 N PHE J 389 42.651 93.298 43.281 1.00 6.99 ATOM 10 CA PHE J 389 42.833 93.235 41.832 1.00 7.60 ATOM 11 C PHE J 389 43.698 92.023 41.558 1.00 3.66 ATOM 12 O PHE J 389 44.314 91.477 42.471 1.00 2.39 ATOM 13 CB PHE J 389 43.456 94.522 41.238 1.00 7.78 ATOM 14 CG PHE J 389 44.909 94.735 41.582 1.00 8.58 ATOM 15 CD1 PHE J 389 45.909 94.035 40.910 1.00 6.03 ATOM 16 CD2 PHE J 389 45.280 95.656 42.555 1.00 5.72 ATOM 17 CE1 PHE J 389 47.243 94.242 41.203 1.00 9.22 ATOM 18 CE2 PHE J 389 46.627 95.876 42.851 1.00 7.48 ATOM 19 CZ PHE J 389 47.610 95.166 42.176 1.00 6.34 ATOM 20 N CYS J 390 43.693 91.569 40.314 1.00 7.03 ATOM 21 CA CYS J 390 44.507 90.439 39.920 1.00 7.04 ATOM 22 C CYS J 390 44.804 90.599 38.442 1.00 9.48 ATOM 23 O CYS J 390 43.952 91.055 37.685 1.00 9.88 ATOM 24 CB CYS J 390 43.766 89.131 40.175 1.00 7.79 ATOM 25 SG CYS J 390 44.787 87.643 39.935 1.00 8.60 ATOM 26 N ASN J 391 46.022 90.240 38.044 1.00 9.81 ATOM 27 CA ASN J 391 46.454 90.346 36.658 1.00 9.91 ATOM 28 C ASN J 391 47.084 89.043 36.190 1.00 10.85 ATOM 29 O ASN J 391 47.838 89.030 35.214 1.00 10.65 ATOM 30 CB ASN J 391 47.479 91.476 36.504 1.00 9.80 ATOM 31 CG ASN J 391 46.881 92.906 36.891 1.00 7.11 ATOM 32 OD1 ASN J 391 45.951 93.309 36.186 1.00 4.89 ATOM 33 ND2 ASN J 391 47.391 93.577 37.917 1.00 8.65 ATOM 34 N GLN J 392 46.715 87.952 36.856 1.00 12.95 ATOM 35 CA GLN J 392 47.233 86.616 36.568 1.00 14.01 ATOM 36 C GLN J 392 46.092 85.622 36.417 1.00 10.42 ATOM 37 O GLN J 392 44.936 86.000 36.417 1.00 9.75 ATOM 38 CB GLN J 392 48.116 86.155 37.721 1.00 19.45 ATOM 39 CG GLN J 392 49.338 87.004 37.955 1.00 27.86 ATOM 40 CD GLN J 392 50.191 86.442 39.168 1.00 32.60 ATOM 41 OE1 GLN J 392 50.475 87.261 40.054 1.00 35.08 ATOM 42 NE2 GLN J 392 50.506 85.145 39.205 1.00 34.36 ATOM 43 N THR J 393 46.427 84.346 36.275 1.00 9.28 ATOM 44 CA THR J 393 45.410 83.321 36.129 1.00 10.66 ATOM 45 C THR J 393 44.634 83.171 37.443 1.00 9.41 ATOM 46 O THR J 393 43.452 82.839 37.448 1.00 11.13 ATOM 47 CB THR J 393 46.024 81.968 35.709 1.00 11.57 ATOM 48 OG1 THR J 393 47.080 81.622 36.606 1.00 16.89 ATOM 49 CG2 THR J 393 46.581 82.037 34.291 1.00 9.75 ATOM 50 N ALA J 394 45.287 83.478 38.555 1.00 9.35 ATOM 51 CA ALA J 394 44.634 83.372 39.852 1.00 9.93 ATOM 52 C ALA J 394 45.356 84.163 40.927 1.00 10.59 ATOM 53 O ALA J 394 46.564 84.415 40.838 1.00 9.90 ATOM 54 CB ALA J 394 44.521 81.895 40.267 1.00 12.34 ATOM 55 N CYS J 395 44.598 84.569 41.941 1.00 9.04 ATOM 56 CA CYS J 395 45.148 85.308 43.081 1.00 7.58 ATOM 57 C CYS J 395 44.304 84.910 44.286 1.00 7.49 ATOM 58 O CYS J 395 43.129 84.605 44.136 1.00 9.46 ATOM 59 CB CYS J 395 45.005 86.836 42.880 1.00 9.58 ATOM 60 SG CYS J 395 45.998 87.627 41.567 1.00 8.91 ATOM 61 N PRO J 396 44.891 84.880 45.491 1.00 8.44 ATOM 62 CA PRO J 396 44.090 84.515 46.671 1.00 9.34 ATOM 63 C PRO J 396 42.892 85.473 46.755 1.00 9.04 ATOM 64 O PRO J 396 43.021 86.666 46.444 1.00 8.23 ATOM 65 CB PRO J 396 45.061 84.774 47.823 1.00 7.43 ATOM 66 CG PRO J 396 46.376 84.401 47.209 1.00 11.04 ATOM 67 CD PRO J 396 46.309 85.057 45.847 1.00 4.95 ATOM 68 N ALA J 397 41.717 84.946 47.082 1.00 10.63 ATOM 69 CA ALA J 397 40.534 85.804 47.195 1.00 12.79 ATOM 70 C ALA J 397 40.607 86.714 48.420 1.00 11.90 ATOM 71 O ALA J 397 41.326 86.436 49.372 1.00 11.95 ATOM 72 CB ALA J 397 39.266 84.961 47.256 1.00 15.80 ATOM 73 N ASP J 398 39.842 87.797 48.383 1.00 12.29 ATOM 74 CA ASP J 398 39.774 88.742 49.491 1.00 10.62 ATOM 75 C ASP J 398 38.678 88.251 50.439 1.00 10.48 ATOM 76 O ASP J 398 37.492 88.493 50.206 1.00 9.54 ATOM 77 CB ASP J 398 39.443 90.127 48.946 1.00 11.17 ATOM 78 CG ASP J 398 39.216 91.208 50.090 1.00 8.54 ATOM 79 OD1 ASP J 398 39.701 91.027 51.208 1.00 9.62 ATOM 80 OD2 ASP J 398 38.541 92.204 49.809 1.00 18.26 ATOM 81 N CYS J 399 39.074 87.535 51.491 1.00 9.05 ATOM 82 CA CYS J 399 38.094 86.985 52.438 1.00 12.75 ATOM 83 C CYS J 399 38.040 87.717 53.775 1.00 13.38 ATOM 84 O CYS J 399 39.067 88.113 54.317 1.00 12.28 ATOM 85 CB CYS J 399 38.354 85.489 52.670 1.00 10.25 ATOM 86 SG CYS J 399 38.519 84.519 51.133 1.00 13.95 ATOM 87 N ASP J 400 36.828 87.893 54.296 1.00 17.11 ATOM 88 CA ASP J 400 36.611 88.589 55.562 1.00 18.70 ATOM 89 C ASP J 400 36.716 87.613 56.730 1.00 20.91 ATOM 90 O ASP J 400 35.865 86.744 56.886 1.00 21.60 ATOM 91 CB ASP J 400 35.231 89.236 55.544 1.00 20.26 ATOM 92 CG ASP J 400 34.990 90.249 56.767 1.00 22.20 ATOM 93 OD1 ASP J 400 35.650 90.135 57.818 1.00 24.47 ATOM 94 OD2 ASP J 400 34.120 91.120 56.620 1.00 23.57 ATOM 95 N PRO J 401 37.786 87.720 57.542 1.00 21.87 ATOM 96 CA PRO J 401 37.956 86.815 58.685 1.00 22.79 ATOM 97 C PRO J 401 36.929 86.920 59.825 1.00 24.73 ATOM 98 O PRO J 401 36.910 86.077 60.713 1.00 25.26 ATOM 99 CB PRO J 401 39.409 87.056 59.125 1.00 22.11 ATOM 100 CG PRO J 401 39.756 88.382 58.560 1.00 22.85 ATOM 101 CD PRO J 401 39.019 88.483 57.273 1.00 20.32 ATOM 102 N ASN J 402 36.048 87.915 59.765 1.00 25.75 ATOM 103 CA ASN J 402 34.988 88.077 60.762 1.00 29.62 ATOM 104 C ASN J 402 33.808 87.158 60.468 1.00 32.39 ATOM 105 O ASN J 402 32.912 86.987 61.299 1.00 35.72 ATOM 106 CB ASN J 402 34.489 89.519 60.812 1.00 28.57 ATOM 107 CG ASN J 402 35.316 90.406 61.842 1.00 30.36 ATOM 108 OD1 ASN J 402 35.572 91.554 61.473 1.00 33.36 ATOM 109 ND2 ASN J 402 35.707 89.882 63.005 1.00 29.62 ATOM 110 N THR J 403 33.792 86.604 59.261 1.00 32.87 ATOM 111 CA THR J 403 32.744 85.687 58.840 1.00 33.65 ATOM 112 C THR J 403 33.448 84.433 58.352 1.00 32.52 ATOM 113 O THR J 403 34.670 84.386 58.296 1.00 35.30 ATOM 114 CB THR J 403 31.942 86.263 57.662 1.00 35.18 ATOM 115 OG1 THR J 403 31.718 87.663 57.871 1.00 36.07 ATOM 116 CG2 THR J 403 30.593 85.555 57.544 1.00 37.32 ATOM 117 N GLN J 404 32.698 83.381 58.069 1.00 34.37 ATOM 118 CA GLN J 404 33.348 82.192 57.542 1.00 34.34 ATOM 119 C GLN J 404 33.058 82.110 56.052 1.00 29.99 ATOM 120 O GLN J 404 31.938 82.374 55.612 1.00 30.16 ATOM 121 CB GLN J 404 32.905 80.907 58.254 1.00 36.92 ATOM 122 CG GLN J 404 33.621 79.655 57.712 1.00 39.64 ATOM 123 CD GLN J 404 33.622 78.409 58.740 1.00 44.53 ATOM 124 OE1 GLN J 404 34.030 77.340 58.274 1.00 46.85 ATOM 125 NE2 GLN J 404 33.231 78.577 60.004 1.00 43.09 ATOM 126 N ALA J 405 34.111 81.863 55.285 1.00 27.89 ATOM 127 CA ALA J 405 34.025 81.709 53.843 1.00 24.57 ATOM 128 C ALA J 405 33.385 82.852 53.066 1.00 20.68 ATOM 129 O ALA J 405 32.814 82.628 52.009 1.00 22.95 ATOM 130 CB ALA J 405 33.343 80.384 53.505 1.00 26.97 ATOM 131 N SER J 406 33.445 84.072 53.587 1.00 17.83 ATOM 132 CA SER J 406 32.886 85.211 52.850 1.00 15.10 ATOM 133 C SER J 406 34.055 85.842 52.077 1.00 15.94 ATOM 134 O SER J 406 34.894 86.544 52.646 1.00 12.07 ATOM 135 CB SER J 406 32.259 86.228 53.795 1.00 13.58 ATOM 136 OG SER J 406 31.704 87.302 53.053 1.00 17.89 ATOM 137 N CYS J 407 34.089 85.590 50.773 1.00 16.06 ATOM 138 CA CYS J 407 35.170 86.061 49.921 1.00 14.45 ATOM 139 C CYS J 407 34.734 86.860 48.710 1.00 14.05 ATOM 140 O CYS J 407 33.653 86.638 48.164 1.00 14.48 ATOM 141 CB CYS J 407 36.007 84.870 49.456 1.00 12.06 ATOM 142 SG CYS J 407 36.636 83.814 50.805 1.00 17.25 ATOM 143 N GLU J 408 35.612 87.776 48.297 1.00 9.90 ATOM 144 CA GLU J 408 35.396 88.643 47.149 1.00 10.83 ATOM 145 C GLU J 408 36.450 88.400 46.067 1.00 8.51 ATOM 146 O GLU J 408 37.596 88.086 46.358 1.00 8.29 ATOM 147 CB GLU J 408 35.484 90.123 47.555 1.00 9.92 ATOM 148 CG GLU J 408 34.640 90.541 48.741 1.00 17.26 ATOM 149 CD GLU J 408 33.057 90.416 48.477 1.00 20.73 ATOM 150 OE1 GLU J 408 32.616 90.615 47.320 1.00 21.70 ATOM 151 OE2 GLU J 408 32.323 90.123 49.448 1.00 22.39 ATOM 152 N CYS J 409 36.052 88.572 44.814 1.00 10.59 ATOM 153 CA CYS J 409 36.967 88.422 43.681 1.00 11.21 ATOM 154 C CYS J 409 36.757 89.617 42.783 1.00 8.92 ATOM 155 O CYS J 409 35.659 90.153 42.729 1.00 12.02 ATOM 156 CB CYS J 409 36.686 87.151 42.874 1.00 3.14 ATOM 157 SG CYS J 409 37.211 85.623 43.693 1.00 9.99 ATOM 158 N PRO J 410 37.823 90.104 42.129 1.00 11.67 ATOM 159 CA PRO J 410 37.639 91.254 41.243 1.00 12.10 ATOM 160 C PRO J 410 36.781 90.840 40.052 1.00 12.77 ATOM 161 O PRO J 410 36.541 89.647 39.836 1.00 14.01 ATOM 162 CB PRO J 410 39.073 91.609 40.832 1.00 8.66 ATOM 163 CG PRO J 410 39.841 90.364 41.053 1.00 11.65 ATOM 164 CD PRO J 410 39.251 89.788 42.290 1.00 9.79 ATOM 165 N GLU J 411 36.247 91.826 39.338 1.00 12.75 ATOM 166 CA GLU J 411 35.412 91.556 38.176 1.00 13.11 ATOM 167 C GLU J 411 36.218 90.746 37.170 1.00 10.11 ATOM 168 O GLU J 411 37.415 90.984 37.004 1.00 9.88 ATOM 169 CB GLU J 411 34.933 92.877 37.554 1.00 17.19 ATOM 170 CG GLU J 411 36.054 93.885 37.282 1.00 22.60 ATOM 171 CD GLU J 411 35.531 95.222 36.559 0.00 20.65 ATOM 172 OE1 GLU J 411 35.538 95.265 35.311 0.00 21.19 ATOM 173 OE2 GLU J 411 35.141 96.171 37.271 0.00 21.00 ATOM 174 N GLY J 412 35.578 89.757 36.542 1.00 10.28 ATOM 175 CA GLY J 412 36.271 88.920 35.569 1.00 6.32 ATOM 176 C GLY J 412 36.948 87.700 36.180 1.00 9.09 ATOM 177 O GLY J 412 37.587 86.907 35.473 1.00 7.18 ATOM 178 N TYR J 413 36.881 87.600 37.507 1.00 7.85 ATOM 179 CA TYR J 413 37.451 86.472 38.240 1.00 8.94 ATOM 180 C TYR J 413 36.334 85.731 38.982 1.00 8.31 ATOM 181 O TYR J 413 35.280 86.286 39.244 1.00 7.75 ATOM 182 CB TYR J 413 38.519 86.935 39.235 1.00 7.65 ATOM 183 CG TYR J 413 39.846 87.260 38.608 1.00 3.98 ATOM 184 CD1 TYR J 413 40.065 88.485 37.995 1.00 5.83 ATOM 185 CD2 TYR J 413 40.872 86.312 38.581 1.00 4.78 ATOM 186 CE1 TYR J 413 41.273 88.761 37.358 1.00 6.50 ATOM 187 CE2 TYR J 413 42.084 86.573 37.953 1.00 6.51 ATOM 188 CZ TYR J 413 42.270 87.799 37.340 1.00 6.91 ATOM 189 OH TYR J 413 43.438 88.067 36.695 1.00 7.70 ATOM 190 N ILE J 414 36.557 84.464 39.296 1.00 11.54 ATOM 191 CA ILE J 414 35.542 83.691 39.990 1.00 10.24 ATOM 192 C ILE J 414 36.207 82.849 41.073 1.00 10.13 ATOM 193 O ILE J 414 37.316 82.356 40.888 1.00 13.26 ATOM 194 CB ILE J 414 34.707 82.831 38.972 1.00 10.68 ATOM 195 CG1 ILE J 414 33.532 82.138 39.673 1.00 12.08 ATOM 196 CG2 ILE J 414 35.601 81.831 38.247 1.00 9.34 ATOM 197 CD1 ILE J 414 32.581 81.409 38.730 1.00 11.49 ATOM 198 N LEU J 415 35.557 82.751 42.228 1.00 10.95 ATOM 199 CA LEU J 415 36.081 81.973 43.357 1.00 11.94 ATOM 200 C LEU J 415 36.231 80.501 42.958 1.00 11.10 ATOM 201 O LEU J 415 35.326 79.921 42.374 1.00 14.71 ATOM 202 CB LEU J 415 35.159 82.127 44.572 1.00 8.41 ATOM 203 CG LEU J 415 35.674 81.694 45.941 1.00 11.06 ATOM 204 CD1 LEU J 415 36.883 82.548 46.299 1.00 8.78 ATOM 205 CD2 LEU J 415 34.562 81.835 46.997 1.00 6.08 ATOM 206 N ASP J 416 37.390 79.930 43.268 1.00 11.56 ATOM 207 CA ASP J 416 37.753 78.561 42.925 1.00 12.04 ATOM 208 C ASP J 416 38.248 77.881 44.202 1.00 14.97 ATOM 209 O ASP J 416 38.252 78.501 45.264 1.00 14.59 ATOM 210 CB ASP J 416 38.889 78.618 41.881 1.00 12.56 ATOM 211 CG ASP J 416 39.090 77.237 41.072 1.00 14.02 ATOM 212 OD1 ASP J 416 38.392 76.236 41.355 1.00 12.33 ATOM 213 OD2 ASP J 416 39.942 77.223 40.157 1.00 13.12 ATOM 214 N ASP J 417 38.655 76.612 44.092 1.00 16.56 ATOM 215 CA ASP J 417 39.161 75.827 45.225 1.00 14.50 ATOM 216 C ASP J 417 40.284 76.536 45.970 1.00 13.36 ATOM 217 O ASP J 417 41.123 77.185 45.357 1.00 13.04 ATOM 218 CB ASP J 417 39.689 74.477 44.744 1.00 17.28 ATOM 219 CG ASP J 417 38.519 73.454 44.355 1.00 19.88 ATOM 220 OD1 ASP J 417 37.501 73.402 45.076 1.00 24.45 ATOM 221 OD2 ASP J 417 38.678 72.736 43.351 1.00 23.46 ATOM 222 N GLY J 418 40.294 76.398 47.291 1.00 12.25 ATOM 223 CA GLY J 418 41.316 77.036 48.102 1.00 8.70 ATOM 224 C GLY J 418 41.068 78.515 48.319 1.00 10.13 ATOM 225 O GLY J 418 41.978 79.245 48.697 1.00 12.55 ATOM 226 N PHE J 419 39.842 78.968 48.076 1.00 11.54 ATOM 227 CA PHE J 419 39.486 80.375 48.255 1.00 11.52 ATOM 228 C PHE J 419 40.404 81.249 47.404 1.00 12.63 ATOM 229 O PHE J 419 40.968 82.244 47.863 1.00 12.86 ATOM 230 CB PHE J 419 39.548 80.769 49.738 1.00 13.91 ATOM 231 CG PHE J 419 38.670 79.920 50.627 1.00 11.02 ATOM 232 CD1 PHE J 419 37.296 80.105 50.651 1.00 10.78 ATOM 233 CD2 PHE J 419 39.221 78.927 51.429 1.00 16.46 ATOM 234 CE1 PHE J 419 36.474 79.309 51.461 1.00 13.76 ATOM 235 CE2 PHE J 419 38.412 78.120 52.245 1.00 18.29 ATOM 236 CZ PHE J 419 37.031 78.319 52.256 1.00 15.65 ATOM 237 N ILE J 420 40.532 80.855 46.144 1.00 10.96 ATOM 238 CA ILE J 420 41.368 81.563 45.182 1.00 12.85 ATOM 239 C ILE J 420 40.509 82.069 44.028 1.00 11.12 ATOM 240 O ILE J 420 39.601 81.384 43.582 1.00 12.93 ATOM 241 CB ILE J 420 42.469 80.616 44.619 1.00 14.56 ATOM 242 CG1 ILE J 420 43.341 80.106 45.770 1.00 18.83 ATOM 243 CG2 ILE J 420 43.357 81.367 43.657 1.00 16.52 ATOM 244 CD1 ILE J 420 44.298 79.032 45.407 1.00 23.65 ATOM 245 N CYS J 421 40.800 83.267 43.540 1.00 9.79 ATOM 246 CA CYS J 421 40.055 83.829 42.420 1.00 11.28 ATOM 247 C CYS J 421 40.788 83.461 41.150 1.00 10.75 ATOM 248 O CYS J 421 41.967 83.787 40.994 1.00 14.66 ATOM 249 CB CYS J 421 39.982 85.351 42.524 1.00 12.21 ATOM 250 SG CYS J 421 39.194 85.930 44.045 1.00 13.10 ATOM 251 N THR J 422 40.092 82.790 40.247 1.00 11.50 ATOM 252 CA THR J 422 40.690 82.364 38.986 1.00 11.03 ATOM 253 C THR J 422 40.033 83.129 37.828 1.00 9.54 ATOM 254 O THR J 422 38.845 83.455 37.875 1.00 10.10 ATOM 255 CB THR J 422 40.566 80.823 38.796 1.00 10.25 ATOM 256 OG1 THR J 422 41.269 80.418 37.612 1.00 18.21 ATOM 257 CG2 THR J 422 39.129 80.423 38.650 1.00 14.35 TER