HEADER HYDROLASE/HYDROLASE INHIBITOR 20-DEC-99 1DX5 TITLE CRYSTAL STRUCTURE OF THE THROMBIN-THROMBOMODULIN COMPLEX COMPND MOL_ID: 3; COMPND 2 MOLECULE: THROMBOMODULIN; COMPND 3 CHAIN: I, J, K, L; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: EGF-LIKE DOMAINS 4 - ; COMPND 6 ENGINEERED: YES; COMPND 7 ENZYMATICALLY DEGLYCOSYLATED (PNGASE F); EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS DBREF 1DX5 L 345 462 UNP P07204 TRBM_HUMAN 363 480 SEQRES 1 L 35 MET PHE CYS ASN GLN THR ALA CYS PRO ALA ASP CYS ASP SEQRES 2 L 35 PRO ASN THR GLN ALA SER CYS GLU CYS PRO GLU GLY TYR SEQRES 3 L 35 ILE LEU ASP ASP GLY PHE ILE CYS THR ATOM 1 N MET L 388 -8.010 72.335 89.618 1.00 9.27 ATOM 2 CA MET L 388 -6.738 71.845 89.109 1.00 9.05 ATOM 3 C MET L 388 -5.499 72.576 89.627 1.00 9.13 ATOM 4 O MET L 388 -5.565 73.712 90.104 1.00 4.98 ATOM 5 CB MET L 388 -6.718 71.868 87.567 1.00 11.71 ATOM 6 CG MET L 388 -6.527 73.236 86.941 1.00 14.79 ATOM 7 SD MET L 388 -6.106 73.200 85.149 1.00 19.19 ATOM 8 CE MET L 388 -4.418 72.694 85.197 1.00 17.82 ATOM 9 N PHE L 389 -4.364 71.897 89.516 1.00 8.53 ATOM 10 CA PHE L 389 -3.087 72.472 89.902 1.00 9.11 ATOM 11 C PHE L 389 -2.087 72.098 88.816 1.00 5.76 ATOM 12 O PHE L 389 -2.375 71.262 87.957 1.00 5.49 ATOM 13 CB PHE L 389 -2.622 71.984 91.303 1.00 7.92 ATOM 14 CG PHE L 389 -2.236 70.516 91.369 1.00 8.77 ATOM 15 CD1 PHE L 389 -0.958 70.093 90.996 1.00 7.35 ATOM 16 CD2 PHE L 389 -3.135 69.568 91.836 1.00 7.26 ATOM 17 CE1 PHE L 389 -0.592 68.768 91.078 1.00 10.28 ATOM 18 CE2 PHE L 389 -2.773 68.221 91.928 1.00 7.13 ATOM 19 CZ PHE L 389 -1.501 67.819 91.549 1.00 10.90 ATOM 20 N CYS L 390 -0.943 72.768 88.816 1.00 8.39 ATOM 21 CA CYS L 390 0.109 72.475 87.861 1.00 7.75 ATOM 22 C CYS L 390 1.430 72.902 88.488 1.00 8.86 ATOM 23 O CYS L 390 1.497 73.925 89.158 1.00 9.65 ATOM 24 CB CYS L 390 -0.125 73.214 86.541 1.00 6.36 ATOM 25 SG CYS L 390 0.998 72.706 85.195 1.00 7.06 ATOM 26 N ASN L 391 2.450 72.061 88.350 1.00 9.14 ATOM 27 CA ASN L 391 3.771 72.362 88.892 1.00 10.13 ATOM 28 C ASN L 391 4.837 72.239 87.804 1.00 10.04 ATOM 29 O ASN L 391 6.014 72.074 88.109 1.00 9.91 ATOM 30 CB ASN L 391 4.123 71.395 90.023 1.00 11.40 ATOM 31 CG ASN L 391 3.043 71.400 91.185 1.00 6.47 ATOM 32 OD1 ASN L 391 2.969 72.434 91.842 1.00 6.78 ATOM 33 ND2 ASN L 391 2.285 70.342 91.377 1.00 7.03 ATOM 34 N GLN L 392 4.408 72.349 86.548 1.00 11.55 ATOM 35 CA GLN L 392 5.273 72.242 85.375 1.00 12.86 ATOM 36 C GLN L 392 5.122 73.471 84.489 1.00 10.31 ATOM 37 O GLN L 392 4.416 74.401 84.843 1.00 10.15 ATOM 38 CB GLN L 392 4.873 71.024 84.554 1.00 17.80 ATOM 39 CG GLN L 392 5.123 69.712 85.232 1.00 25.49 ATOM 40 CD GLN L 392 4.601 68.517 84.338 1.00 29.77 ATOM 41 OE1 GLN L 392 3.654 67.884 84.807 1.00 32.10 ATOM 42 NE2 GLN L 392 5.133 68.304 83.131 1.00 31.30 ATOM 43 N THR L 393 5.782 73.470 83.333 1.00 10.63 ATOM 44 CA THR L 393 5.677 74.608 82.431 1.00 13.01 ATOM 45 C THR L 393 4.253 74.701 81.863 1.00 13.87 ATOM 46 O THR L 393 3.715 75.793 81.686 1.00 15.71 ATOM 47 CB THR L 393 6.748 74.572 81.285 1.00 12.42 ATOM 48 OG1 THR L 393 6.707 73.317 80.599 1.00 12.74 ATOM 49 CG2 THR L 393 8.152 74.792 81.841 1.00 8.64 ATOM 50 N ALA L 394 3.624 73.549 81.660 1.00 13.34 ATOM 51 CA ALA L 394 2.269 73.496 81.130 1.00 11.52 ATOM 52 C ALA L 394 1.551 72.234 81.565 1.00 13.71 ATOM 53 O ALA L 394 2.182 71.221 81.878 1.00 13.27 ATOM 54 CB ALA L 394 2.288 73.574 79.603 1.00 12.80 ATOM 55 N CYS L 395 0.223 72.332 81.635 1.00 12.04 ATOM 56 CA CYS L 395 -0.651 71.217 81.988 1.00 10.21 ATOM 57 C CYS L 395 -1.943 71.471 81.217 1.00 10.85 ATOM 58 O CYS L 395 -2.307 72.623 80.981 1.00 8.67 ATOM 59 CB CYS L 395 -0.998 71.220 83.490 1.00 11.87 ATOM 60 SG CYS L 395 0.338 70.867 84.677 1.00 11.64 ATOM 61 N PRO L 396 -2.649 70.406 80.802 1.00 9.47 ATOM 62 CA PRO L 396 -3.907 70.606 80.067 1.00 10.04 ATOM 63 C PRO L 396 -4.861 71.460 80.916 1.00 9.32 ATOM 64 O PRO L 396 -4.903 71.324 82.140 1.00 9.59 ATOM 65 CB PRO L 396 -4.444 69.176 79.923 1.00 8.48 ATOM 66 CG PRO L 396 -3.180 68.359 79.800 1.00 6.90 ATOM 67 CD PRO L 396 -2.276 68.978 80.849 1.00 8.74 ATOM 68 N ALA L 397 -5.587 72.372 80.277 1.00 10.01 ATOM 69 CA ALA L 397 -6.538 73.208 81.007 1.00 11.28 ATOM 70 C ALA L 397 -7.758 72.419 81.476 1.00 10.78 ATOM 71 O ALA L 397 -8.120 71.397 80.907 1.00 10.14 ATOM 72 CB ALA L 397 -6.990 74.371 80.143 1.00 14.24 ATOM 73 N ASP L 398 -8.410 72.931 82.504 1.00 12.47 ATOM 74 CA ASP L 398 -9.602 72.305 83.043 1.00 12.25 ATOM 75 C ASP L 398 -10.806 72.888 82.301 1.00 12.04 ATOM 76 O ASP L 398 -11.306 73.951 82.656 1.00 10.48 ATOM 77 CB ASP L 398 -9.687 72.600 84.537 1.00 12.49 ATOM 78 CG ASP L 398 -11.056 72.125 85.177 1.00 10.61 ATOM 79 OD1 ASP L 398 -11.698 71.218 84.623 1.00 13.02 ATOM 80 OD2 ASP L 398 -11.434 72.699 86.208 1.00 15.49 ATOM 81 N CYS L 399 -11.231 72.210 81.237 1.00 11.17 ATOM 82 CA CYS L 399 -12.356 72.682 80.430 1.00 13.22 ATOM 83 C CYS L 399 -13.671 71.961 80.706 1.00 13.28 ATOM 84 O CYS L 399 -13.695 70.755 80.959 1.00 12.22 ATOM 85 CB CYS L 399 -12.007 72.594 78.940 1.00 12.51 ATOM 86 SG CYS L 399 -10.403 73.349 78.518 1.00 14.92 ATOM 87 N ASP L 400 -14.764 72.719 80.665 1.00 16.57 ATOM 88 CA ASP L 400 -16.111 72.192 80.908 1.00 16.62 ATOM 89 C ASP L 400 -16.733 71.748 79.588 1.00 19.88 ATOM 90 O ASP L 400 -17.009 72.576 78.728 1.00 20.98 ATOM 91 CB ASP L 400 -16.953 73.290 81.539 1.00 20.69 ATOM 92 CG ASP L 400 -18.424 72.803 81.974 1.00 22.15 ATOM 93 OD1 ASP L 400 -18.815 71.644 81.728 1.00 21.31 ATOM 94 OD2 ASP L 400 -19.137 73.641 82.550 1.00 26.94 ATOM 95 N PRO L 401 -16.931 70.429 79.398 1.00 20.66 ATOM 96 CA PRO L 401 -17.523 69.937 78.149 1.00 22.42 ATOM 97 C PRO L 401 -18.999 70.279 77.895 1.00 25.53 ATOM 98 O PRO L 401 -19.506 70.026 76.805 1.00 26.71 ATOM 99 CB PRO L 401 -17.233 68.430 78.178 1.00 20.96 ATOM 100 CG PRO L 401 -17.017 68.121 79.600 1.00 21.49 ATOM 101 CD PRO L 401 -16.375 69.325 80.201 1.00 20.47 ATOM 102 N ASN L 402 -19.668 70.870 78.884 1.00 25.86 ATOM 103 CA ASN L 402 -21.066 71.288 78.735 1.00 30.05 ATOM 104 C ASN L 402 -21.174 72.636 78.025 1.00 32.07 ATOM 105 O ASN L 402 -22.250 73.019 77.562 1.00 33.28 ATOM 106 CB ASN L 402 -21.751 71.409 80.092 1.00 28.15 ATOM 107 CG ASN L 402 -22.387 70.041 80.572 1.00 28.84 ATOM 108 OD1 ASN L 402 -22.316 69.812 81.781 1.00 31.68 ATOM 109 ND2 ASN L 402 -22.949 69.224 79.681 1.00 28.79 ATOM 110 N THR L 403 -20.065 73.368 77.984 1.00 33.03 ATOM 111 CA THR L 403 -20.026 74.670 77.338 1.00 34.21 ATOM 112 C THR L 403 -19.051 74.613 76.171 1.00 32.86 ATOM 113 O THR L 403 -18.444 73.584 75.903 1.00 34.08 ATOM 114 CB THR L 403 -19.564 75.757 78.322 1.00 36.26 ATOM 115 OG1 THR L 403 -20.136 75.509 79.612 1.00 38.28 ATOM 116 CG2 THR L 403 -20.016 77.135 77.843 1.00 39.60 ATOM 117 N GLN L 404 -18.924 75.713 75.448 1.00 34.46 ATOM 118 CA GLN L 404 -18.003 75.752 74.323 1.00 33.78 ATOM 119 C GLN L 404 -16.691 76.427 74.711 1.00 28.51 ATOM 120 O GLN L 404 -16.645 77.635 74.942 1.00 28.41 ATOM 121 CB GLN L 404 -18.632 76.468 73.126 0.00 36.23 ATOM 122 CG GLN L 404 -17.758 76.466 71.875 0.00 40.72 ATOM 123 CD GLN L 404 -17.454 74.982 71.322 1.00 43.17 ATOM 124 OE1 GLN L 404 -16.658 74.314 71.981 0.00 44.11 ATOM 125 NE2 GLN L 404 -18.054 74.551 70.218 0.00 44.24 ATOM 126 N ALA L 405 -15.640 75.621 74.814 1.00 24.46 ATOM 127 CA ALA L 405 -14.302 76.091 75.145 1.00 21.62 ATOM 128 C ALA L 405 -14.188 76.963 76.389 1.00 17.85 ATOM 129 O ALA L 405 -13.503 77.978 76.376 1.00 21.99 ATOM 130 CB ALA L 405 -13.695 76.802 73.942 1.00 25.03 ATOM 131 N SER L 406 -14.905 76.601 77.444 1.00 15.29 ATOM 132 CA SER L 406 -14.849 77.327 78.711 1.00 15.21 ATOM 133 C SER L 406 -13.822 76.582 79.578 1.00 16.66 ATOM 134 O SER L 406 -14.115 75.522 80.140 1.00 14.61 ATOM 135 CB SER L 406 -16.214 77.322 79.384 1.00 11.12 ATOM 136 OG SER L 406 -16.152 77.932 80.660 1.00 18.26 ATOM 137 N CYS L 407 -12.619 77.143 79.664 1.00 18.38 ATOM 138 CA CYS L 407 -11.511 76.537 80.398 1.00 15.72 ATOM 139 C CYS L 407 -10.977 77.339 81.579 1.00 13.59 ATOM 140 O CYS L 407 -11.103 78.562 81.634 1.00 14.73 ATOM 141 CB CYS L 407 -10.369 76.247 79.422 1.00 13.39 ATOM 142 SG CYS L 407 -10.864 75.261 77.970 1.00 19.58 ATOM 143 N GLU L 408 -10.343 76.624 82.506 1.00 11.40 ATOM 144 CA GLU L 408 -9.765 77.199 83.720 1.00 10.96 ATOM 145 C GLU L 408 -8.284 76.849 83.858 1.00 7.33 ATOM 146 O GLU L 408 -7.836 75.791 83.434 1.00 6.70 ATOM 147 CB GLU L 408 -10.478 76.653 84.964 1.00 11.34 ATOM 148 CG GLU L 408 -11.988 76.678 84.919 1.00 16.60 ATOM 149 CD GLU L 408 -12.605 78.159 84.969 1.00 18.54 ATOM 150 OE1 GLU L 408 -11.985 79.061 85.569 1.00 20.16 ATOM 151 OE2 GLU L 408 -13.701 78.354 84.410 1.00 22.65 ATOM 152 N CYS L 409 -7.539 77.736 84.499 1.00 11.04 ATOM 153 CA CYS L 409 -6.118 77.523 84.729 1.00 10.32 ATOM 154 C CYS L 409 -5.859 77.928 86.152 1.00 9.88 ATOM 155 O CYS L 409 -6.592 78.750 86.699 1.00 12.93 ATOM 156 CB CYS L 409 -5.260 78.381 83.789 1.00 5.82 ATOM 157 SG CYS L 409 -5.261 77.832 82.060 1.00 6.20 ATOM 158 N PRO L 410 -4.887 77.281 86.812 1.00 10.21 ATOM 159 CA PRO L 410 -4.623 77.681 88.198 1.00 9.48 ATOM 160 C PRO L 410 -3.969 79.051 88.202 1.00 10.81 ATOM 161 O PRO L 410 -3.628 79.580 87.137 1.00 10.05 ATOM 162 CB PRO L 410 -3.686 76.579 88.723 1.00 4.87 ATOM 163 CG PRO L 410 -3.141 75.923 87.496 1.00 9.45 ATOM 164 CD PRO L 410 -4.248 75.992 86.492 1.00 9.18 ATOM 165 N GLU L 411 -3.895 79.673 89.375 1.00 10.93 ATOM 166 CA GLU L 411 -3.273 80.984 89.489 1.00 12.95 ATOM 167 C GLU L 411 -1.826 80.864 89.033 1.00 10.39 ATOM 168 O GLU L 411 -1.171 79.860 89.318 1.00 13.36 ATOM 169 CB GLU L 411 -3.341 81.492 90.939 1.00 17.36 ATOM 170 CG GLU L 411 -4.578 82.346 91.249 1.00 23.70 ATOM 171 CD GLU L 411 -5.956 81.515 91.157 0.00 22.46 ATOM 172 OE1 GLU L 411 -6.517 81.408 90.045 0.00 23.27 ATOM 173 OE2 GLU L 411 -6.418 81.011 92.202 0.00 23.28 ATOM 174 N GLY L 412 -1.334 81.868 88.311 1.00 9.95 ATOM 175 CA GLY L 412 0.041 81.819 87.831 1.00 6.80 ATOM 176 C GLY L 412 0.190 81.169 86.464 1.00 7.52 ATOM 177 O GLY L 412 1.297 81.108 85.919 1.00 6.68 ATOM 178 N TYR L 413 -0.910 80.631 85.945 1.00 6.11 ATOM 179 CA TYR L 413 -0.937 79.982 84.630 1.00 6.76 ATOM 180 C TYR L 413 -1.916 80.733 83.720 1.00 6.80 ATOM 181 O TYR L 413 -2.849 81.374 84.193 1.00 7.73 ATOM 182 CB TYR L 413 -1.357 78.502 84.749 1.00 6.92 ATOM 183 CG TYR L 413 -0.270 77.590 85.275 1.00 5.05 ATOM 184 CD1 TYR L 413 -0.055 77.444 86.637 1.00 9.94 ATOM 185 CD2 TYR L 413 0.583 76.923 84.401 1.00 6.88 ATOM 186 CE1 TYR L 413 0.997 76.653 87.117 1.00 9.07 ATOM 187 CE2 TYR L 413 1.631 76.137 84.864 1.00 8.08 ATOM 188 CZ TYR L 413 1.829 76.011 86.218 1.00 9.08 ATOM 189 OH TYR L 413 2.850 75.235 86.673 1.00 10.89 ATOM 190 N ILE L 414 -1.680 80.682 82.417 1.00 8.04 ATOM 191 CA ILE L 414 -2.548 81.356 81.470 1.00 7.55 ATOM 192 C ILE L 414 -2.850 80.397 80.316 1.00 7.67 ATOM 193 O ILE L 414 -2.039 79.540 79.994 1.00 10.08 ATOM 194 CB ILE L 414 -1.901 82.688 80.991 1.00 7.72 ATOM 195 CG1 ILE L 414 -2.871 83.489 80.118 1.00 10.15 ATOM 196 CG2 ILE L 414 -0.578 82.423 80.258 1.00 9.89 ATOM 197 CD1 ILE L 414 -2.312 84.857 79.700 1.00 9.96 ATOM 198 N LEU L 415 -4.051 80.493 79.755 1.00 8.24 ATOM 199 CA LEU L 415 -4.467 79.631 78.654 1.00 11.04 ATOM 200 C LEU L 415 -3.610 79.859 77.420 1.00 11.74 ATOM 201 O LEU L 415 -3.333 80.997 77.044 1.00 15.72 ATOM 202 CB LEU L 415 -5.942 79.846 78.330 1.00 12.23 ATOM 203 CG LEU L 415 -6.620 78.765 77.492 1.00 12.62 ATOM 204 CD1 LEU L 415 -6.491 77.431 78.229 1.00 9.93 ATOM 205 CD2 LEU L 415 -8.106 79.134 77.259 1.00 10.73 ATOM 206 N ASP L 416 -3.229 78.762 76.778 1.00 10.32 ATOM 207 CA ASP L 416 -2.356 78.798 75.627 1.00 12.46 ATOM 208 C ASP L 416 -2.931 77.882 74.559 1.00 13.99 ATOM 209 O ASP L 416 -3.970 77.260 74.775 1.00 13.85 ATOM 210 CB ASP L 416 -0.969 78.305 76.080 1.00 13.78 ATOM 211 CG ASP L 416 0.216 78.720 75.075 1.00 14.68 ATOM 212 OD1 ASP L 416 -0.053 79.326 74.016 1.00 12.34 ATOM 213 OD2 ASP L 416 1.378 78.412 75.400 1.00 12.19 ATOM 214 N ASP L 417 -2.256 77.809 73.408 1.00 14.12 ATOM 215 CA ASP L 417 -2.681 76.963 72.287 1.00 14.28 ATOM 216 C ASP L 417 -2.921 75.514 72.688 1.00 10.65 ATOM 217 O ASP L 417 -2.152 74.948 73.446 1.00 12.89 ATOM 218 CB ASP L 417 -1.628 76.980 71.177 1.00 17.34 ATOM 219 CG ASP L 417 -1.647 78.327 70.331 1.00 18.34 ATOM 220 OD1 ASP L 417 -2.719 78.952 70.246 1.00 22.68 ATOM 221 OD2 ASP L 417 -0.595 78.694 69.773 1.00 24.63 ATOM 222 N GLY L 418 -3.966 74.913 72.129 1.00 10.97 ATOM 223 CA GLY L 418 -4.300 73.535 72.436 1.00 6.97 ATOM 224 C GLY L 418 -5.014 73.393 73.771 1.00 9.73 ATOM 225 O GLY L 418 -5.058 72.306 74.336 1.00 10.91 ATOM 226 N PHE L 419 -5.595 74.484 74.263 1.00 9.80 ATOM 227 CA PHE L 419 -6.317 74.484 75.536 1.00 11.65 ATOM 228 C PHE L 419 -5.419 73.956 76.649 1.00 12.02 ATOM 229 O PHE L 419 -5.778 73.058 77.418 1.00 9.60 ATOM 230 CB PHE L 419 -7.627 73.698 75.420 1.00 15.29 ATOM 231 CG PHE L 419 -8.583 74.265 74.388 1.00 12.86 ATOM 232 CD1 PHE L 419 -9.349 75.384 74.678 1.00 11.41 ATOM 233 CD2 PHE L 419 -8.690 73.693 73.124 1.00 14.98 ATOM 234 CE1 PHE L 419 -10.213 75.932 73.720 1.00 13.74 ATOM 235 CE2 PHE L 419 -9.548 74.231 72.156 1.00 16.77 ATOM 236 CZ PHE L 419 -10.309 75.353 72.456 1.00 13.84 ATOM 237 N ILE L 420 -4.230 74.549 76.712 1.00 11.05 ATOM 238 CA ILE L 420 -3.231 74.189 77.701 1.00 11.34 ATOM 239 C ILE L 420 -2.906 75.396 78.582 1.00 7.39 ATOM 240 O ILE L 420 -2.917 76.531 78.129 1.00 9.36 ATOM 241 CB ILE L 420 -1.952 73.659 77.001 1.00 13.90 ATOM 242 CG1 ILE L 420 -2.324 72.487 76.086 1.00 17.65 ATOM 243 CG2 ILE L 420 -0.975 73.127 78.033 1.00 14.95 ATOM 244 CD1 ILE L 420 -1.200 71.961 75.239 1.00 25.38 ATOM 245 N CYS L 421 -2.715 75.148 79.869 1.00 7.22 ATOM 246 CA CYS L 421 -2.365 76.192 80.817 1.00 6.84 ATOM 247 C CYS L 421 -0.848 76.229 80.910 1.00 9.38 ATOM 248 O CYS L 421 -0.216 75.227 81.253 1.00 12.92 ATOM 249 CB CYS L 421 -2.960 75.879 82.185 1.00 7.53 ATOM 250 SG CYS L 421 -4.775 75.868 82.199 1.00 12.06 ATOM 251 N THR L 422 -0.272 77.378 80.586 1.00 9.47 ATOM 252 CA THR L 422 1.176 77.569 80.607 1.00 9.96 ATOM 253 C THR L 422 1.576 78.541 81.716 1.00 7.96 ATOM 254 O THR L 422 0.868 79.503 81.996 1.00 5.96 ATOM 255 CB THR L 422 1.686 78.121 79.245 1.00 11.85 ATOM 256 OG1 THR L 422 1.177 77.296 78.197 1.00 20.25 ATOM 257 CG2 THR L 422 3.208 78.068 79.174 1.00 6.52 TER