HEADER TRANSCRIPTION/DNA 27-MAR-02 1L9Z TITLE Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter TITLE 2 DNA Complex at 6.5 A Resolution COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA POLYMERASE, BETA-PRIME SUBUNIT; COMPND 3 CHAIN: D; COMPND 4 EC: 2.7.7.6; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 6.50 ANGSTORMS DBREF 1L9Z D 1 1524 UNP Q9KWU6 RPOC_THEAQ 1 1524 SEQRES 1 D 43 LYS PRO PHE LEU LEU LYS LYS MET GLU GLU LYS ALA PHE SEQRES 2 D 43 ALA PRO ASN VAL LYS ALA ALA ARG ARG MET LEU GLU ARG SEQRES 3 D 43 GLN ARG ASP ILE LYS ASP GLU VAL TRP ASP ALA LEU GLU SEQRES 4 D 43 GLU VAL ILE HIS ATOM 1 N LYS D 654 70.706 195.585 224.392 1.00 25.00 ATOM 2 CA LYS D 654 71.576 196.525 225.091 1.00 25.00 ATOM 3 C LYS D 654 70.814 197.662 225.773 1.00 25.00 ATOM 4 N PRO D 655 69.897 198.325 225.045 1.00 25.00 ATOM 5 CA PRO D 655 69.112 199.433 225.599 1.00 25.00 ATOM 6 C PRO D 655 68.678 199.243 227.052 1.00 25.00 ATOM 7 N PHE D 656 67.620 198.466 227.257 1.00 25.00 ATOM 8 CA PHE D 656 67.105 198.212 228.599 1.00 25.00 ATOM 9 C PHE D 656 68.163 197.602 229.513 1.00 25.00 ATOM 10 N LEU D 657 69.086 196.843 228.931 1.00 25.00 ATOM 11 CA LEU D 657 70.149 196.210 229.704 1.00 25.00 ATOM 12 C LEU D 657 71.025 197.264 230.372 1.00 25.00 ATOM 13 N LEU D 658 71.159 198.415 229.721 1.00 25.00 ATOM 14 CA LEU D 658 71.967 199.503 230.254 1.00 25.00 ATOM 15 C LEU D 658 71.283 200.125 231.466 1.00 25.00 ATOM 16 N LYS D 659 69.970 200.307 231.367 1.00 25.00 ATOM 17 CA LYS D 659 69.191 200.891 232.451 1.00 25.00 ATOM 18 C LYS D 659 69.177 199.969 233.665 1.00 25.00 ATOM 19 N LYS D 660 69.227 198.665 233.413 1.00 25.00 ATOM 20 CA LYS D 660 69.222 197.677 234.484 1.00 25.00 ATOM 21 C LYS D 660 70.486 197.789 235.330 1.00 25.00 ATOM 22 N MET D 661 71.627 197.929 234.664 1.00 25.00 ATOM 23 CA MET D 661 72.908 198.047 235.350 1.00 25.00 ATOM 24 C MET D 661 72.988 199.345 236.147 1.00 25.00 ATOM 25 N GLU D 662 72.319 200.380 235.648 1.00 25.00 ATOM 26 CA GLU D 662 72.308 201.682 236.306 1.00 25.00 ATOM 27 C GLU D 662 71.877 201.565 237.764 1.00 25.00 ATOM 28 N GLU D 663 70.945 200.655 238.028 1.00 25.00 ATOM 29 CA GLU D 663 70.437 200.450 239.378 1.00 25.00 ATOM 30 C GLU D 663 71.033 199.205 240.029 1.00 25.00 ATOM 31 N LYS D 664 71.711 198.385 239.233 1.00 25.00 ATOM 32 CA LYS D 664 72.326 197.169 239.751 1.00 25.00 ATOM 33 C LYS D 664 73.803 197.405 240.062 1.00 25.00 ATOM 34 N ALA D 665 74.118 198.628 240.483 1.00 25.00 ATOM 35 CA ALA D 665 75.483 199.015 240.831 1.00 25.00 ATOM 36 C ALA D 665 76.416 199.046 239.625 1.00 25.00 ATOM 37 N PHE D 666 76.432 197.953 238.867 1.00 25.00 ATOM 38 CA PHE D 666 77.273 197.810 237.680 1.00 25.00 ATOM 39 C PHE D 666 77.735 199.136 237.083 1.00 25.00 ATOM 40 N ALA D 667 76.955 199.665 236.146 1.00 25.00 ATOM 41 CA ALA D 667 77.289 200.925 235.494 1.00 25.00 ATOM 42 C ALA D 667 76.791 202.120 236.301 1.00 25.00 ATOM 43 N PRO D 668 77.640 203.148 236.462 1.00 25.00 ATOM 44 CA PRO D 668 77.288 204.356 237.215 1.00 25.00 ATOM 45 C PRO D 668 76.212 205.167 236.499 1.00 25.00 ATOM 46 N ASN D 669 76.255 205.138 235.172 1.00 25.00 ATOM 47 CA ASN D 669 75.293 205.855 234.345 1.00 25.00 ATOM 48 C ASN D 669 75.077 205.089 233.045 1.00 25.00 ATOM 49 N VAL D 670 74.113 205.537 232.248 1.00 25.00 ATOM 50 CA VAL D 670 73.811 204.883 230.980 1.00 25.00 ATOM 51 C VAL D 670 74.923 205.111 229.960 1.00 25.00 ATOM 52 N LYS D 671 75.499 206.309 229.978 1.00 25.00 ATOM 53 CA LYS D 671 76.571 206.660 229.054 1.00 25.00 ATOM 54 C LYS D 671 77.780 205.747 229.228 1.00 25.00 ATOM 55 N ALA D 672 78.207 205.566 230.474 1.00 25.00 ATOM 56 CA ALA D 672 79.355 204.720 230.778 1.00 25.00 ATOM 57 C ALA D 672 79.126 203.291 230.300 1.00 25.00 ATOM 58 N ALA D 673 77.869 202.859 230.323 1.00 25.00 ATOM 59 CA ALA D 673 77.513 201.511 229.898 1.00 25.00 ATOM 60 C ALA D 673 77.671 201.331 228.392 1.00 25.00 ATOM 61 N ARG D 674 77.996 202.417 227.696 1.00 25.00 ATOM 62 CA ARG D 674 78.179 202.367 226.250 1.00 25.00 ATOM 63 C ARG D 674 79.659 202.321 225.885 1.00 25.00 ATOM 64 N ARG D 675 80.520 202.318 226.898 1.00 25.00 ATOM 65 CA ARG D 675 81.960 202.286 226.669 1.00 25.00 ATOM 66 C ARG D 675 82.661 201.169 227.437 1.00 25.00 ATOM 67 N MET D 676 81.921 200.114 227.763 1.00 25.00 ATOM 68 CA MET D 676 82.490 198.982 228.487 1.00 25.00 ATOM 69 C MET D 676 82.422 197.726 227.626 1.00 25.00 ATOM 70 N LEU D 677 81.660 197.810 226.540 1.00 25.00 ATOM 71 CA LEU D 677 81.497 196.695 225.617 1.00 25.00 ATOM 72 C LEU D 677 81.619 197.176 224.174 1.00 25.00 ATOM 73 N GLU D 678 82.849 197.443 223.748 1.00 25.00 ATOM 74 CA GLU D 678 83.108 197.914 222.392 1.00 25.00 ATOM 75 C GLU D 678 84.429 197.371 221.857 1.00 25.00 ATOM 76 N ARG D 679 85.501 197.590 222.611 1.00 25.00 ATOM 77 CA ARG D 679 86.826 197.128 222.214 1.00 25.00 ATOM 78 C ARG D 679 86.971 195.622 222.401 1.00 25.00 ATOM 79 N GLN D 680 85.842 194.931 222.520 1.00 25.00 ATOM 80 CA GLN D 680 85.841 193.484 222.704 1.00 25.00 ATOM 81 C GLN D 680 86.732 193.095 223.879 1.00 25.00 ATOM 82 N ARG D 681 86.606 193.833 224.977 1.00 25.00 ATOM 83 CA ARG D 681 87.397 193.575 226.174 1.00 25.00 ATOM 84 C ARG D 681 87.037 192.233 226.801 1.00 25.00 ATOM 85 N ASP D 682 86.091 191.530 226.185 1.00 25.00 ATOM 86 CA ASP D 682 85.647 190.232 226.681 1.00 25.00 ATOM 87 C ASP D 682 85.180 190.342 228.128 1.00 25.00 ATOM 88 N ILE D 683 84.019 190.959 228.320 1.00 25.00 ATOM 89 CA ILE D 683 83.453 191.138 229.650 1.00 25.00 ATOM 90 C ILE D 683 83.227 189.804 230.352 1.00 25.00 ATOM 91 N LYS D 684 82.311 189.004 229.812 1.00 25.00 ATOM 92 CA LYS D 684 81.977 187.699 230.377 1.00 25.00 ATOM 93 C LYS D 684 82.023 187.718 231.901 1.00 25.00 ATOM 94 N ASP D 685 81.424 188.748 232.492 1.00 25.00 ATOM 95 CA ASP D 685 81.402 188.887 233.942 1.00 25.00 ATOM 96 C ASP D 685 80.222 189.727 234.421 1.00 25.00 ATOM 97 N GLU D 686 79.296 189.080 235.124 1.00 25.00 ATOM 98 CA GLU D 686 78.113 189.738 235.671 1.00 25.00 ATOM 99 C GLU D 686 77.124 190.216 234.610 1.00 25.00 ATOM 100 N VAL D 687 77.634 190.829 233.546 1.00 25.00 ATOM 101 CA VAL D 687 76.780 191.328 232.474 1.00 25.00 ATOM 102 C VAL D 687 75.909 190.216 231.898 1.00 25.00 ATOM 103 N TRP D 688 76.484 189.024 231.768 1.00 25.00 ATOM 104 CA TRP D 688 75.755 187.880 231.235 1.00 25.00 ATOM 105 C TRP D 688 74.571 187.518 232.126 1.00 25.00 ATOM 106 N ASP D 689 74.591 188.009 233.361 1.00 25.00 ATOM 107 CA ASP D 689 73.515 187.740 234.307 1.00 25.00 ATOM 108 C ASP D 689 72.383 188.741 234.113 1.00 25.00 ATOM 109 N ALA D 690 72.713 190.026 234.205 1.00 25.00 ATOM 110 CA ALA D 690 71.725 191.084 234.033 1.00 25.00 ATOM 111 C ALA D 690 71.014 190.906 232.697 1.00 25.00 ATOM 112 N LEU D 691 71.710 190.288 231.749 1.00 25.00 ATOM 113 CA LEU D 691 71.161 190.043 230.423 1.00 25.00 ATOM 114 C LEU D 691 70.002 189.054 230.489 1.00 25.00 ATOM 115 N GLU D 692 70.054 188.150 231.462 1.00 25.00 ATOM 116 CA GLU D 692 69.008 187.149 231.633 1.00 25.00 ATOM 117 C GLU D 692 67.697 187.789 232.076 1.00 25.00 ATOM 118 N GLU D 693 67.791 188.768 232.969 1.00 25.00 ATOM 119 CA GLU D 693 66.610 189.460 233.470 1.00 25.00 ATOM 120 C GLU D 693 65.866 190.123 232.317 1.00 25.00 ATOM 121 N VAL D 694 66.626 190.627 231.350 1.00 25.00 ATOM 122 CA VAL D 694 66.052 191.284 230.183 1.00 25.00 ATOM 123 C VAL D 694 65.459 190.240 229.244 1.00 25.00 ATOM 124 N ILE D 695 66.127 189.095 229.154 1.00 25.00 ATOM 125 CA ILE D 695 65.677 188.005 228.298 1.00 25.00 ATOM 126 C ILE D 695 64.862 187.018 229.130 1.00 25.00 ATOM 127 N HIS D 696 63.905 187.547 229.886 1.00 25.00 ATOM 128 CA HIS D 696 63.053 186.723 230.733 1.00 25.00 ATOM 129 C HIS D 696 61.593 186.943 230.351 1.00 25.00 TER