HEADER TRANSLATION 31-DEC-69 1P3Q TITLE Mechanism of Ubiquitin Recognition by the CUE Domain of VPS9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Vacuolar protein sorting-associated protein VPS9; COMPND 3 CHAIN: Q, R; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: CUE ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.70 ANGSTORMS DBREF 1P3Q R 398 451 UNP P54787 VPS9_YEAST 398 451 MODRES 1P3Q MSE R 22 MET SELENOMETHIONINE MODRES 1P3Q MSE R 26 MET SELENOMETHIONINE SEQRES 1 R 36 LEU GLN ASN MET PHE PRO ASP MET ASP PRO SER LEU ILE SEQRES 2 R 36 GLU ASP VAL CYS ILE ALA ALA ALA SER ARG ILE GLY PRO SEQRES 3 R 36 CYS VAL ASP ALA LEU LEU SER LEU SER GLU ATOM 1 N LEU R 416 56.425 37.461 16.605 1.00 45.49 ATOM 2 CA LEU R 416 55.899 38.781 17.055 1.00 45.23 ATOM 3 C LEU R 416 55.969 38.948 18.565 1.00 45.22 ATOM 4 O LEU R 416 56.098 40.070 19.066 1.00 43.26 ATOM 5 CB LEU R 416 54.460 38.944 16.582 1.00 43.96 ATOM 6 CG LEU R 416 54.351 38.946 15.062 1.00 45.54 ATOM 7 CD1 LEU R 416 52.972 38.508 14.655 1.00 43.24 ATOM 8 CD2 LEU R 416 54.675 40.332 14.527 1.00 45.83 ATOM 9 N GLN R 417 55.860 37.833 19.286 1.00 45.62 ATOM 10 CA GLN R 417 55.934 37.849 20.748 1.00 45.78 ATOM 11 C GLN R 417 57.381 38.103 21.159 1.00 43.89 ATOM 12 O GLN R 417 57.642 38.828 22.118 1.00 43.02 ATOM 13 CB GLN R 417 55.456 36.513 21.329 1.00 46.97 ATOM 14 CG GLN R 417 53.945 36.370 21.408 1.00 53.89 ATOM 15 CD GLN R 417 53.348 37.083 22.609 1.00 59.77 ATOM 16 OE1 GLN R 417 53.629 38.256 22.856 1.00 60.71 ATOM 17 NE2 GLN R 417 52.514 36.374 23.360 1.00 63.84 ATOM 18 N ASN R 418 58.317 37.507 20.423 1.00 43.07 ATOM 19 CA ASN R 418 59.742 37.690 20.697 1.00 41.62 ATOM 20 C ASN R 418 60.211 39.079 20.274 1.00 37.92 ATOM 21 O ASN R 418 61.341 39.479 20.556 1.00 37.47 ATOM 22 CB ASN R 418 60.573 36.633 19.966 1.00 44.54 ATOM 23 CG ASN R 418 60.880 35.436 20.836 1.00 49.00 ATOM 24 OD1 ASN R 418 61.482 35.569 21.907 1.00 57.14 ATOM 25 ND2 ASN R 418 60.471 34.257 20.384 1.00 49.09 ATOM 26 N MSE R 419 59.343 39.807 19.583 1.00 32.28 ATOM 27 CA MSE R 419 59.678 41.151 19.138 1.00 29.19 ATOM 28 C MSE R 419 59.115 42.135 20.157 1.00 27.05 ATOM 29 O MSE R 419 59.690 43.189 20.427 1.00 26.98 ATOM 30 CB MSE R 419 59.079 41.409 17.762 0.50 27.29 ATOM 31 CG MSE R 419 59.640 42.605 17.052 0.50 31.42 ATOM 32 SE MSE R 419 58.853 42.796 15.314 0.50 47.98 ATOM 33 CE MSE R 419 59.129 41.018 14.637 0.50 50.95 ATOM 34 N PHE R 420 57.966 41.787 20.720 1.00 26.48 ATOM 35 CA PHE R 420 57.326 42.632 21.721 1.00 28.26 ATOM 36 C PHE R 420 56.940 41.673 22.843 1.00 30.47 ATOM 37 O PHE R 420 55.759 41.380 23.044 1.00 32.04 ATOM 38 CB PHE R 420 56.070 43.329 21.149 1.00 27.86 ATOM 39 CG PHE R 420 56.326 44.145 19.902 1.00 29.53 ATOM 40 CD1 PHE R 420 56.311 43.543 18.641 1.00 30.23 ATOM 41 CD2 PHE R 420 56.592 45.511 19.987 1.00 27.74 ATOM 42 CE1 PHE R 420 56.561 44.299 17.485 1.00 33.02 ATOM 43 CE2 PHE R 420 56.841 46.275 18.837 1.00 27.46 ATOM 44 CZ PHE R 420 56.824 45.658 17.581 1.00 26.85 ATOM 45 N PRO R 421 57.941 41.154 23.578 1.00 33.55 ATOM 46 CA PRO R 421 57.729 40.210 24.686 1.00 35.23 ATOM 47 C PRO R 421 56.896 40.693 25.866 1.00 37.31 ATOM 48 O PRO R 421 56.399 39.876 26.643 1.00 39.59 ATOM 49 CB PRO R 421 59.151 39.834 25.097 1.00 35.67 ATOM 50 CG PRO R 421 59.926 41.069 24.778 1.00 34.33 ATOM 51 CD PRO R 421 59.375 41.454 23.423 1.00 32.70 ATOM 52 N ASP R 422 56.741 42.004 26.010 1.00 37.58 ATOM 53 CA ASP R 422 55.954 42.554 27.112 1.00 40.08 ATOM 54 C ASP R 422 54.537 42.928 26.705 1.00 40.70 ATOM 55 O ASP R 422 53.700 43.232 27.552 1.00 43.15 ATOM 56 CB ASP R 422 56.623 43.800 27.694 1.00 42.28 ATOM 57 CG ASP R 422 57.606 43.476 28.789 1.00 46.63 ATOM 58 OD1 ASP R 422 57.329 42.541 29.568 1.00 56.94 ATOM 59 OD2 ASP R 422 58.643 44.165 28.887 1.00 51.60 ATOM 60 N MSE R 423 54.269 42.918 25.408 1.00 41.52 ATOM 61 CA MSE R 423 52.957 43.290 24.913 1.00 43.14 ATOM 62 C MSE R 423 51.883 42.270 25.277 1.00 45.78 ATOM 63 O MSE R 423 52.178 41.093 25.487 1.00 46.15 ATOM 64 CB MSE R 423 53.017 43.460 23.403 1.00 42.67 ATOM 65 CG MSE R 423 51.804 44.105 22.828 1.00 42.86 ATOM 66 SE MSE R 423 52.035 44.416 20.973 0.50 41.68 ATOM 67 CE MSE R 423 53.222 45.969 21.089 0.50 19.93 ATOM 68 N ASP R 424 50.640 42.735 25.360 1.00 48.03 ATOM 69 CA ASP R 424 49.512 41.872 25.699 1.00 49.69 ATOM 70 C ASP R 424 49.356 40.849 24.578 1.00 49.43 ATOM 71 O ASP R 424 48.939 41.198 23.476 1.00 48.14 ATOM 72 CB ASP R 424 48.234 42.710 25.823 1.00 50.63 ATOM 73 CG ASP R 424 47.089 41.941 26.457 1.00 53.60 ATOM 74 OD1 ASP R 424 46.657 40.924 25.874 1.00 50.66 ATOM 75 OD2 ASP R 424 46.625 42.356 27.542 1.00 53.37 ATOM 76 N PRO R 425 49.681 39.572 24.846 1.00 49.82 ATOM 77 CA PRO R 425 49.575 38.511 23.838 1.00 50.19 ATOM 78 C PRO R 425 48.279 38.556 23.036 1.00 50.82 ATOM 79 O PRO R 425 48.240 38.125 21.885 1.00 48.02 ATOM 80 CB PRO R 425 49.702 37.236 24.668 1.00 49.96 ATOM 81 CG PRO R 425 50.629 37.652 25.758 1.00 51.17 ATOM 82 CD PRO R 425 50.083 39.011 26.148 1.00 50.92 ATOM 83 N SER R 426 47.222 39.082 23.651 1.00 53.17 ATOM 84 CA SER R 426 45.919 39.181 23.005 1.00 53.19 ATOM 85 C SER R 426 45.842 40.377 22.061 1.00 52.43 ATOM 86 O SER R 426 45.010 40.412 21.155 1.00 53.04 ATOM 87 CB SER R 426 44.814 39.293 24.063 1.00 54.17 ATOM 88 OG SER R 426 43.524 39.212 23.473 1.00 56.28 ATOM 89 N LEU R 427 46.708 41.361 22.273 1.00 51.59 ATOM 90 CA LEU R 427 46.717 42.553 21.429 1.00 49.34 ATOM 91 C LEU R 427 47.540 42.297 20.156 1.00 47.66 ATOM 92 O LEU R 427 47.327 42.932 19.120 1.00 47.37 ATOM 93 CB LEU R 427 47.284 43.735 22.223 1.00 49.51 ATOM 94 CG LEU R 427 47.245 45.148 21.633 1.00 47.95 ATOM 95 CD1 LEU R 427 45.834 45.528 21.213 1.00 46.15 ATOM 96 CD2 LEU R 427 47.762 46.123 22.685 1.00 47.81 ATOM 97 N ILE R 428 48.471 41.350 20.244 1.00 46.05 ATOM 98 CA ILE R 428 49.315 40.990 19.114 1.00 43.48 ATOM 99 C ILE R 428 48.470 40.226 18.106 1.00 44.06 ATOM 100 O ILE R 428 48.300 40.650 16.964 1.00 40.12 ATOM 101 CB ILE R 428 50.499 40.098 19.567 1.00 42.41 ATOM 102 CG1 ILE R 428 51.383 40.878 20.544 1.00 41.17 ATOM 103 CG2 ILE R 428 51.289 39.617 18.361 1.00 43.11 ATOM 104 CD1 ILE R 428 52.674 40.183 20.913 1.00 29.52 ATOM 105 N GLU R 429 47.942 39.094 18.547 1.00 46.54 ATOM 106 CA GLU R 429 47.106 38.254 17.704 1.00 49.92 ATOM 107 C GLU R 429 46.107 39.148 16.963 1.00 50.50 ATOM 108 O GLU R 429 45.969 39.070 15.743 1.00 53.48 ATOM 109 CB GLU R 429 46.380 37.224 18.577 1.00 51.22 ATOM 110 CG GLU R 429 45.888 35.999 17.832 1.00 54.00 ATOM 111 CD GLU R 429 45.549 34.849 18.767 1.00 58.83 ATOM 112 OE1 GLU R 429 45.204 33.753 18.267 1.00 58.62 ATOM 113 OE2 GLU R 429 45.630 35.040 20.000 1.00 60.13 ATOM 114 N ASP R 430 45.441 40.023 17.709 1.00 52.77 ATOM 115 CA ASP R 430 44.461 40.945 17.139 1.00 51.39 ATOM 116 C ASP R 430 44.968 41.689 15.902 1.00 48.98 ATOM 117 O ASP R 430 44.279 41.744 14.886 1.00 49.41 ATOM 118 CB ASP R 430 44.011 41.966 18.195 1.00 54.48 ATOM 119 CG ASP R 430 43.168 41.344 19.310 1.00 57.26 ATOM 120 OD1 ASP R 430 42.736 40.176 19.171 1.00 60.61 ATOM 121 OD2 ASP R 430 42.927 42.036 20.328 1.00 57.66 ATOM 122 N VAL R 431 46.170 42.257 15.984 1.00 43.27 ATOM 123 CA VAL R 431 46.761 43.012 14.872 1.00 41.86 ATOM 124 C VAL R 431 47.154 42.154 13.664 1.00 40.44 ATOM 125 O VAL R 431 47.131 42.620 12.521 1.00 40.24 ATOM 126 CB VAL R 431 48.018 43.788 15.337 1.00 40.36 ATOM 127 CG1 VAL R 431 48.550 44.653 14.206 1.00 43.55 ATOM 128 CG2 VAL R 431 47.675 44.637 16.544 1.00 38.94 ATOM 129 N CYS R 432 47.529 40.908 13.913 1.00 40.72 ATOM 130 CA CYS R 432 47.917 40.025 12.822 1.00 42.32 ATOM 131 C CYS R 432 46.736 39.692 11.929 1.00 42.59 ATOM 132 O CYS R 432 46.804 39.855 10.711 1.00 38.47 ATOM 133 CB CYS R 432 48.515 38.736 13.372 1.00 45.15 ATOM 134 SG CYS R 432 50.147 38.956 14.049 1.00 49.16 ATOM 135 N ILE R 433 45.678 39.165 12.548 1.00 44.61 ATOM 136 CA ILE R 433 44.428 38.829 11.862 1.00 46.49 ATOM 137 C ILE R 433 43.863 40.097 11.281 1.00 46.63 ATOM 138 O ILE R 433 42.637 40.219 11.049 1.00 49.96 ATOM 139 CB ILE R 433 43.365 38.300 12.844 1.00 47.35 ATOM 140 CG1 ILE R 433 43.854 37.023 13.529 1.00 20.06 ATOM 141 CG2 ILE R 433 42.052 38.055 12.116 1.00 20.06 ATOM 142 CD1 ILE R 433 45.200 37.167 14.203 1.00 20.06 ATOM 143 N ALA R 434 44.680 41.062 10.881 1.00 45.20 ATOM 144 CA ALA R 434 44.039 42.226 10.193 1.00 43.37 ATOM 145 C ALA R 434 44.875 42.608 8.989 1.00 43.77 ATOM 146 O ALA R 434 44.397 43.136 7.986 1.00 40.86 ATOM 147 CB ALA R 434 43.876 43.397 11.143 1.00 44.83 ATOM 148 N ALA R 435 46.130 42.293 9.231 1.00 43.31 ATOM 149 CA ALA R 435 47.107 42.545 8.181 1.00 43.40 ATOM 150 C ALA R 435 47.057 41.345 7.243 1.00 43.93 ATOM 151 O ALA R 435 47.063 41.490 6.017 1.00 41.93 ATOM 152 CB ALA R 435 48.497 42.689 8.785 1.00 45.00 ATOM 153 N ALA R 436 46.999 40.160 7.847 1.00 45.27 ATOM 154 CA ALA R 436 46.935 38.895 7.121 1.00 47.51 ATOM 155 C ALA R 436 45.469 38.614 6.844 1.00 48.78 ATOM 156 O ALA R 436 44.917 37.581 7.239 1.00 51.56 ATOM 157 CB ALA R 436 47.549 37.769 7.965 1.00 48.16 ATOM 158 N SER R 437 44.855 39.573 6.164 1.00 49.24 ATOM 159 CA SER R 437 43.451 39.553 5.787 1.00 47.08 ATOM 160 C SER R 437 43.287 40.804 4.954 1.00 45.44 ATOM 161 O SER R 437 42.458 40.880 4.053 1.00 46.91 ATOM 162 CB SER R 437 42.563 39.652 7.029 1.00 47.51 ATOM 163 OG SER R 437 41.371 40.371 6.747 1.00 44.58 ATOM 164 N ARG R 438 44.115 41.788 5.273 1.00 43.68 ATOM 165 CA ARG R 438 44.089 43.060 4.593 1.00 43.59 ATOM 166 C ARG R 438 42.639 43.518 4.491 1.00 41.98 ATOM 167 O ARG R 438 42.149 43.831 3.410 1.00 42.05 ATOM 168 CB ARG R 438 44.727 42.934 3.202 1.00 44.85 ATOM 169 CG ARG R 438 45.578 44.149 2.817 1.00 49.33 ATOM 170 CD ARG R 438 46.633 44.465 3.898 1.00 53.49 ATOM 171 NE ARG R 438 47.263 45.780 3.724 1.00 54.29 ATOM 172 CZ ARG R 438 48.220 46.263 4.515 1.00 54.85 ATOM 173 NH1 ARG R 438 48.666 45.540 5.533 1.00 57.80 ATOM 174 NH2 ARG R 438 48.724 47.473 4.302 1.00 51.41 ATOM 175 N ILE R 439 41.949 43.521 5.629 1.00 40.14 ATOM 176 CA ILE R 439 40.564 43.961 5.663 1.00 37.54 ATOM 177 C ILE R 439 40.616 45.479 5.551 1.00 35.98 ATOM 178 O ILE R 439 39.663 46.116 5.093 1.00 34.95 ATOM 179 CB ILE R 439 39.851 43.557 6.985 1.00 39.00 ATOM 180 CG1 ILE R 439 38.383 43.996 6.940 1.00 37.44 ATOM 181 CG2 ILE R 439 40.556 44.188 8.188 1.00 38.56 ATOM 182 CD1 ILE R 439 37.735 44.066 8.303 1.00 29.33 ATOM 183 N GLY R 440 41.747 46.051 5.966 1.00 34.20 ATOM 184 CA GLY R 440 41.930 47.491 5.882 1.00 32.99 ATOM 185 C GLY R 440 41.836 48.002 4.453 1.00 33.01 ATOM 186 O GLY R 440 41.048 48.892 4.170 1.00 31.91 ATOM 187 N PRO R 441 42.655 47.479 3.529 1.00 33.50 ATOM 188 CA PRO R 441 42.587 47.943 2.133 1.00 31.70 ATOM 189 C PRO R 441 41.264 47.595 1.451 1.00 29.95 ATOM 190 O PRO R 441 40.802 48.319 0.564 1.00 29.43 ATOM 191 CB PRO R 441 43.780 47.250 1.482 1.00 32.66 ATOM 192 CG PRO R 441 44.786 47.242 2.604 1.00 35.93 ATOM 193 CD PRO R 441 43.922 46.777 3.782 1.00 33.93 ATOM 194 N CYS R 442 40.665 46.476 1.846 1.00 28.06 ATOM 195 CA CYS R 442 39.379 46.091 1.275 1.00 27.55 ATOM 196 C CYS R 442 38.381 47.164 1.648 1.00 27.24 ATOM 197 O CYS R 442 37.522 47.512 0.851 1.00 27.00 ATOM 198 CB CYS R 442 38.883 44.748 1.818 1.00 27.99 ATOM 199 SG CYS R 442 39.736 43.314 1.220 1.00 30.73 ATOM 200 N VAL R 443 38.487 47.680 2.874 1.00 27.70 ATOM 201 CA VAL R 443 37.590 48.731 3.338 1.00 26.24 ATOM 202 C VAL R 443 37.931 50.020 2.599 1.00 27.84 ATOM 203 O VAL R 443 37.043 50.832 2.327 1.00 24.80 ATOM 204 CB VAL R 443 37.699 48.946 4.901 1.00 27.09 ATOM 205 CG1 VAL R 443 36.972 50.221 5.320 1.00 28.19 ATOM 206 CG2 VAL R 443 37.065 47.752 5.631 1.00 29.65 ATOM 207 N ASP R 444 39.187 50.210 2.299 1.00 27.92 ATOM 208 CA ASP R 444 39.454 51.446 1.663 1.00 28.63 ATOM 209 C ASP R 444 38.840 51.434 0.257 0.00 19.44 ATOM 210 O ASP R 444 38.566 52.500 -0.286 0.00 17.90 ATOM 211 CB ASP R 444 40.986 51.692 1.719 1.00 32.70 ATOM 212 CG ASP R 444 41.477 52.071 3.129 1.00 37.00 ATOM 213 OD1 ASP R 444 40.829 52.948 3.757 1.00 42.12 ATOM 214 OD2 ASP R 444 42.491 51.504 3.602 1.00 44.48 ATOM 215 N ALA R 445 38.637 50.265 -0.316 0.00 18.69 ATOM 216 CA ALA R 445 38.282 50.078 -1.720 1.00 24.28 ATOM 217 C ALA R 445 36.775 50.207 -1.769 1.00 22.72 ATOM 218 O ALA R 445 36.219 50.851 -2.667 1.00 24.08 ATOM 219 CB ALA R 445 38.709 48.704 -2.226 1.00 23.53 ATOM 220 N LEU R 446 36.091 49.592 -0.794 1.00 20.18 ATOM 221 CA LEU R 446 34.638 49.690 -0.760 1.00 21.51 ATOM 222 C LEU R 446 34.155 51.101 -0.470 0.00 15.51 ATOM 223 O LEU R 446 33.207 51.559 -1.067 1.00 22.27 ATOM 224 CB LEU R 446 34.061 48.687 0.248 0.00 14.84 ATOM 225 CG LEU R 446 34.322 47.197 -0.042 0.00 14.01 ATOM 226 CD1 LEU R 446 33.714 46.381 1.070 1.00 29.93 ATOM 227 CD2 LEU R 446 33.722 46.756 -1.382 1.00 24.49 ATOM 228 N LEU R 447 34.804 51.788 0.455 0.00 14.45 ATOM 229 CA LEU R 447 34.462 53.163 0.771 0.00 14.51 ATOM 230 C LEU R 447 34.651 54.009 -0.480 0.00 14.63 ATOM 231 O LEU R 447 33.876 54.906 -0.762 1.00 24.09 ATOM 232 CB LEU R 447 35.374 53.682 1.883 1.00 23.15 ATOM 233 CG LEU R 447 34.997 53.139 3.261 1.00 27.42 ATOM 234 CD1 LEU R 447 36.086 53.502 4.269 1.00 30.66 ATOM 235 CD2 LEU R 447 33.642 53.716 3.678 1.00 25.63 ATOM 236 N SER R 448 35.678 53.706 -1.256 1.00 24.79 ATOM 237 CA SER R 448 35.935 54.498 -2.460 1.00 25.60 ATOM 238 C SER R 448 34.813 54.452 -3.500 1.00 25.59 ATOM 239 O SER R 448 34.569 55.430 -4.200 1.00 24.95 ATOM 240 CB SER R 448 37.287 54.105 -3.090 1.00 27.73 ATOM 241 OG SER R 448 37.228 52.935 -3.889 1.00 31.50 ATOM 242 N LEU R 449 34.106 53.334 -3.596 1.00 22.36 ATOM 243 CA LEU R 449 33.050 53.225 -4.592 1.00 23.05 ATOM 244 C LEU R 449 31.908 54.246 -4.467 1.00 25.53 ATOM 245 O LEU R 449 31.115 54.406 -5.397 1.00 23.99 ATOM 246 CB LEU R 449 32.491 51.808 -4.577 1.00 19.32 ATOM 247 CG LEU R 449 33.551 50.724 -4.869 1.00 17.13 ATOM 248 CD1 LEU R 449 32.895 49.329 -4.847 1.00 20.11 ATOM 249 CD2 LEU R 449 34.169 50.971 -6.239 1.00 22.73 ATOM 250 N SER R 450 31.827 54.950 -3.337 1.00 28.59 ATOM 251 CA SER R 450 30.759 55.930 -3.144 1.00 33.69 ATOM 252 C SER R 450 31.262 57.362 -3.124 1.00 35.30 ATOM 253 O SER R 450 30.529 58.286 -2.775 1.00 36.97 ATOM 254 CB SER R 450 29.996 55.632 -1.855 1.00 31.88 ATOM 255 OG SER R 450 29.412 54.350 -1.933 1.00 39.28 ATOM 256 N GLU R 451 32.510 57.538 -3.521 1.00 39.47 ATOM 257 CA GLU R 451 33.124 58.854 -3.552 1.00 42.99 ATOM 258 C GLU R 451 33.032 59.459 -4.956 1.00 44.56 ATOM 259 O GLU R 451 32.894 60.696 -5.059 1.00 30.87 ATOM 260 CB GLU R 451 34.585 58.742 -3.146 1.00 44.04 ATOM 261 CG GLU R 451 35.427 58.131 -4.230 1.00 46.67 ATOM 262 CD GLU R 451 36.879 58.049 -3.865 1.00 47.48 ATOM 263 OE1 GLU R 451 37.683 57.783 -4.788 1.00 44.76 ATOM 264 OE2 GLU R 451 37.203 58.244 -2.664 1.00 43.57 ATOM 265 OXT GLU R 451 33.127 58.696 -5.942 1.00 45.48 TER