HEADER HYDROLASE 31-DEC-69 1S5P TITLE Structure and substrate binding properties of cobB, a Sir2 homolog TITLE 2 protein deacetylase from Eschericia coli. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-dependent deacetylase; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.1.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.96 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 136 REMARK 465 CYS A 137 REMARK 465 CYS A 138 REMARK 465 GLN A 139 REMARK 465 PHE A 140 REMARK 465 PRO A 141 REMARK 465 ALA A 142 DBREF 1S5P A 40 274 UNP P75960 NPD_ECOLI 40 274 SEQRES 1 A 39 GLU LEU LEU LYS VAL ARG CYS SER GLN SER GLY GLN VAL SEQRES 2 A 39 LEU ASP TRP THR GLY ASP VAL THR PRO GLU ASP LYS CYS SEQRES 3 A 39 HIS CYS CYS GLN PHE PRO ALA PRO LEU ARG PRO HIS VAL ATOM 1 N GLU A 149 70.125 -2.099 38.553 1.00 39.41 ATOM 2 CA GLU A 149 69.482 -0.925 39.136 1.00 37.87 ATOM 3 C GLU A 149 70.067 -0.570 40.500 1.00 33.07 ATOM 4 O GLU A 149 70.243 -1.428 41.356 1.00 39.37 ATOM 5 CB GLU A 149 67.984 -1.187 39.265 1.00 42.81 ATOM 6 CG GLU A 149 67.372 -1.732 37.982 1.00 45.44 ATOM 7 CD GLU A 149 65.880 -1.971 38.090 1.00 38.73 ATOM 8 OE1 GLU A 149 65.434 -3.064 37.694 1.00 43.06 ATOM 9 OE2 GLU A 149 65.156 -1.062 38.555 1.00 37.96 ATOM 10 N LEU A 150 70.361 0.708 40.684 1.00 35.86 ATOM 11 CA LEU A 150 70.951 1.208 41.912 1.00 37.20 ATOM 12 C LEU A 150 70.019 1.039 43.110 1.00 41.54 ATOM 13 O LEU A 150 70.483 0.907 44.241 1.00 38.33 ATOM 14 CB LEU A 150 71.298 2.680 41.735 1.00 35.91 ATOM 15 CG LEU A 150 72.633 3.191 42.269 1.00 48.10 ATOM 16 CD1 LEU A 150 72.621 4.708 42.209 1.00 38.76 ATOM 17 CD2 LEU A 150 72.855 2.714 43.692 1.00 50.21 ATOM 18 N LEU A 151 68.711 1.040 42.859 1.00 43.98 ATOM 19 CA LEU A 151 67.727 0.895 43.929 1.00 47.14 ATOM 20 C LEU A 151 67.298 -0.547 44.163 1.00 48.03 ATOM 21 O LEU A 151 66.171 -0.809 44.583 1.00 51.25 ATOM 22 CB LEU A 151 66.492 1.757 43.646 1.00 40.18 ATOM 23 CG LEU A 151 66.700 3.272 43.641 1.00 45.57 ATOM 24 CD1 LEU A 151 65.395 3.954 43.236 1.00 45.44 ATOM 25 CD2 LEU A 151 67.162 3.751 45.017 1.00 40.77 ATOM 26 N LYS A 152 68.198 -1.480 43.876 1.00 48.33 ATOM 27 CA LYS A 152 67.932 -2.896 44.091 1.00 45.69 ATOM 28 C LYS A 152 69.217 -3.577 44.539 1.00 46.24 ATOM 29 O LYS A 152 70.318 -3.063 44.323 1.00 45.76 ATOM 30 CB LYS A 152 67.431 -3.576 42.814 1.00 47.98 ATOM 31 CG LYS A 152 66.049 -3.165 42.353 1.00 46.82 ATOM 32 CD LYS A 152 65.617 -4.021 41.178 1.00 47.13 ATOM 33 CE LYS A 152 64.233 -3.643 40.678 1.00 50.04 ATOM 34 NZ LYS A 152 63.808 -4.509 39.541 1.00 45.97 ATOM 35 N VAL A 153 69.069 -4.734 45.170 1.00 48.14 ATOM 36 CA VAL A 153 70.216 -5.497 45.639 1.00 54.07 ATOM 37 C VAL A 153 69.936 -6.982 45.483 1.00 53.29 ATOM 38 O VAL A 153 68.812 -7.383 45.177 1.00 55.06 ATOM 39 CB VAL A 153 70.538 -5.203 47.128 1.00 57.00 ATOM 40 CG1 VAL A 153 70.909 -3.743 47.304 1.00 52.68 ATOM 41 CG2 VAL A 153 69.347 -5.563 48.001 1.00 57.60 ATOM 42 N ARG A 154 70.967 -7.791 45.698 1.00 56.68 ATOM 43 CA ARG A 154 70.856 -9.239 45.581 1.00 62.34 ATOM 44 C ARG A 154 71.822 -9.898 46.560 1.00 64.36 ATOM 45 O ARG A 154 72.835 -9.305 46.932 1.00 59.78 ATOM 46 CB ARG A 154 71.178 -9.663 44.148 1.00 59.49 ATOM 47 CG ARG A 154 72.020 -8.638 43.399 1.00 70.10 ATOM 48 CD ARG A 154 72.471 -9.137 42.041 1.00 70.55 ATOM 49 NE ARG A 154 73.868 -9.554 42.045 1.00 75.53 ATOM 50 CZ ARG A 154 74.359 -10.509 42.826 1.00 79.52 ATOM 51 NH1 ARG A 154 73.564 -11.146 43.672 1.00 83.26 ATOM 52 NH2 ARG A 154 75.642 -10.837 42.753 1.00 83.12 ATOM 53 N CYS A 155 71.506 -11.120 46.982 1.00 73.02 ATOM 54 CA CYS A 155 72.365 -11.831 47.926 1.00 83.72 ATOM 55 C CYS A 155 73.479 -12.602 47.233 1.00 84.94 ATOM 56 O CYS A 155 73.248 -13.311 46.253 1.00 84.17 ATOM 57 CB CYS A 155 71.539 -12.779 48.807 1.00 90.09 ATOM 58 SG CYS A 155 70.533 -13.990 47.926 1.00102.82 ATOM 59 N SER A 156 74.690 -12.455 47.759 1.00 87.46 ATOM 60 CA SER A 156 75.872 -13.108 47.209 1.00 89.61 ATOM 61 C SER A 156 75.733 -14.620 47.092 1.00 90.46 ATOM 62 O SER A 156 76.627 -15.282 46.567 1.00 92.00 ATOM 63 CB SER A 156 77.098 -12.792 48.073 1.00 91.22 ATOM 64 OG SER A 156 77.354 -11.400 48.128 1.00 92.56 ATOM 65 N GLN A 157 74.620 -15.168 47.570 1.00 90.80 ATOM 66 CA GLN A 157 74.418 -16.611 47.520 1.00 92.36 ATOM 67 C GLN A 157 73.251 -17.076 46.654 1.00 89.63 ATOM 68 O GLN A 157 73.408 -17.971 45.824 1.00 89.48 ATOM 69 CB GLN A 157 74.256 -17.158 48.941 1.00 97.22 ATOM 70 CG GLN A 157 75.509 -17.027 49.799 1.00 99.51 ATOM 71 CD GLN A 157 76.647 -17.914 49.319 1.00100.76 ATOM 72 OE1 GLN A 157 77.062 -17.844 48.162 1.00100.21 ATOM 73 NE2 GLN A 157 77.159 -18.752 50.213 1.00102.85 ATOM 74 N SER A 158 72.080 -16.483 46.848 1.00 87.64 ATOM 75 CA SER A 158 70.910 -16.869 46.069 1.00 87.32 ATOM 76 C SER A 158 70.798 -16.063 44.784 1.00 88.58 ATOM 77 O SER A 158 70.333 -16.566 43.760 1.00 89.03 ATOM 78 CB SER A 158 69.635 -16.686 46.896 1.00 87.96 ATOM 79 OG SER A 158 68.480 -16.900 46.105 1.00 81.38 ATOM 80 N GLY A 159 71.229 -14.808 44.843 1.00 87.68 ATOM 81 CA GLY A 159 71.152 -13.953 43.677 1.00 86.62 ATOM 82 C GLY A 159 69.798 -13.279 43.609 1.00 86.77 ATOM 83 O GLY A 159 69.622 -12.299 42.881 1.00 87.21 ATOM 84 N GLN A 160 68.839 -13.802 44.369 1.00 86.27 ATOM 85 CA GLN A 160 67.496 -13.236 44.392 1.00 85.65 ATOM 86 C GLN A 160 67.576 -11.724 44.493 1.00 81.45 ATOM 87 O GLN A 160 68.525 -11.176 45.056 1.00 81.70 ATOM 88 CB GLN A 160 66.692 -13.778 45.572 1.00 90.39 ATOM 89 CG GLN A 160 66.378 -15.256 45.495 1.00 99.15 ATOM 90 CD GLN A 160 65.386 -15.687 46.558 1.00103.62 ATOM 91 OE1 GLN A 160 64.197 -15.372 46.475 1.00104.32 ATOM 92 NE2 GLN A 160 65.872 -16.399 47.570 1.00102.09 ATOM 93 N VAL A 161 66.569 -11.051 43.953 1.00 76.45 ATOM 94 CA VAL A 161 66.548 -9.602 43.962 1.00 71.34 ATOM 95 C VAL A 161 65.409 -9.012 44.774 1.00 70.26 ATOM 96 O VAL A 161 64.285 -9.512 44.762 1.00 67.23 ATOM 97 CB VAL A 161 66.457 -9.056 42.528 1.00 68.93 ATOM 98 CG1 VAL A 161 66.516 -7.534 42.542 1.00 71.94 ATOM 99 CG2 VAL A 161 67.581 -9.636 41.691 1.00 67.54 ATOM 100 N LEU A 162 65.715 -7.934 45.479 1.00 69.07 ATOM 101 CA LEU A 162 64.725 -7.249 46.286 1.00 71.20 ATOM 102 C LEU A 162 65.001 -5.754 46.241 1.00 67.42 ATOM 103 O LEU A 162 66.155 -5.327 46.176 1.00 67.89 ATOM 104 CB LEU A 162 64.765 -7.780 47.725 1.00 75.60 ATOM 105 CG LEU A 162 66.097 -7.772 48.477 1.00 76.17 ATOM 106 CD1 LEU A 162 66.358 -6.389 49.053 1.00 78.66 ATOM 107 CD2 LEU A 162 66.049 -8.801 49.597 1.00 76.21 ATOM 108 N ASP A 163 63.935 -4.963 46.251 1.00 67.77 ATOM 109 CA ASP A 163 64.064 -3.515 46.212 1.00 65.72 ATOM 110 C ASP A 163 64.871 -3.063 47.422 1.00 61.68 ATOM 111 O ASP A 163 64.954 -3.776 48.418 1.00 61.97 ATOM 112 CB ASP A 163 62.677 -2.868 46.204 1.00 72.22 ATOM 113 CG ASP A 163 61.859 -3.260 44.979 1.00 77.08 ATOM 114 OD1 ASP A 163 61.657 -4.473 44.760 1.00 79.78 ATOM 115 OD2 ASP A 163 61.416 -2.359 44.234 1.00 82.87 ATOM 116 N TRP A 164 65.469 -1.882 47.335 1.00 58.68 ATOM 117 CA TRP A 164 66.287 -1.375 48.427 1.00 56.23 ATOM 118 C TRP A 164 66.654 0.073 48.139 1.00 57.74 ATOM 119 O TRP A 164 67.289 0.366 47.129 1.00 57.95 ATOM 120 CB TRP A 164 67.547 -2.229 48.545 1.00 56.10 ATOM 121 CG TRP A 164 68.356 -1.957 49.760 1.00 57.89 ATOM 122 CD1 TRP A 164 69.108 -0.848 50.018 1.00 60.25 ATOM 123 CD2 TRP A 164 68.487 -2.807 50.900 1.00 55.88 ATOM 124 NE1 TRP A 164 69.703 -0.955 51.253 1.00 64.09 ATOM 125 CE2 TRP A 164 69.338 -2.152 51.817 1.00 62.92 ATOM 126 CE3 TRP A 164 67.967 -4.065 51.239 1.00 58.91 ATOM 127 CZ2 TRP A 164 69.684 -2.710 53.053 1.00 63.96 ATOM 128 CZ3 TRP A 164 68.309 -4.622 52.469 1.00 59.49 ATOM 129 CH2 TRP A 164 69.160 -3.943 53.360 1.00 61.63 ATOM 130 N THR A 165 66.265 0.978 49.031 1.00 51.37 ATOM 131 CA THR A 165 66.536 2.392 48.819 1.00 51.08 ATOM 132 C THR A 165 67.566 2.989 49.767 1.00 51.23 ATOM 133 O THR A 165 68.225 3.969 49.433 1.00 53.19 ATOM 134 CB THR A 165 65.236 3.216 48.930 1.00 53.60 ATOM 135 OG1 THR A 165 64.761 3.182 50.281 1.00 55.75 ATOM 136 CG2 THR A 165 64.162 2.640 48.018 1.00 54.62 ATOM 137 N GLY A 166 67.706 2.401 50.947 1.00 58.75 ATOM 138 CA GLY A 166 68.657 2.927 51.909 1.00 62.08 ATOM 139 C GLY A 166 70.052 2.356 51.767 1.00 69.29 ATOM 140 O GLY A 166 70.372 1.704 50.769 1.00 70.12 ATOM 141 N ASP A 167 70.890 2.609 52.768 1.00 66.91 ATOM 142 CA ASP A 167 72.257 2.111 52.759 1.00 65.44 ATOM 143 C ASP A 167 72.264 0.618 53.052 1.00 65.65 ATOM 144 O ASP A 167 71.341 0.084 53.665 1.00 64.70 ATOM 145 CB ASP A 167 73.098 2.822 53.821 1.00 66.87 ATOM 146 CG ASP A 167 73.058 4.328 53.692 1.00 69.51 ATOM 147 OD1 ASP A 167 73.512 4.858 52.658 1.00 66.58 ATOM 148 OD2 ASP A 167 72.572 4.987 54.636 1.00 78.44 ATOM 149 N VAL A 168 73.309 -0.056 52.595 1.00 66.40 ATOM 150 CA VAL A 168 73.464 -1.476 52.843 1.00 63.89 ATOM 151 C VAL A 168 74.569 -1.556 53.882 1.00 67.19 ATOM 152 O VAL A 168 75.717 -1.209 53.604 1.00 62.87 ATOM 153 CB VAL A 168 73.884 -2.226 51.568 1.00 62.61 ATOM 154 CG1 VAL A 168 74.252 -3.661 51.901 1.00 62.21 ATOM 155 CG2 VAL A 168 72.747 -2.198 50.564 1.00 62.56 ATOM 156 N THR A 169 74.211 -1.985 55.087 1.00 72.51 ATOM 157 CA THR A 169 75.173 -2.090 56.175 1.00 77.19 ATOM 158 C THR A 169 75.688 -3.513 56.356 1.00 79.27 ATOM 159 O THR A 169 75.072 -4.474 55.895 1.00 79.25 ATOM 160 CB THR A 169 74.555 -1.618 57.503 1.00 76.91 ATOM 161 OG1 THR A 169 73.437 -2.451 57.832 1.00 75.56 ATOM 162 CG2 THR A 169 74.092 -0.172 57.389 1.00 72.91 ATOM 163 N PRO A 170 76.834 -3.663 57.035 1.00 83.65 ATOM 164 CA PRO A 170 77.432 -4.978 57.275 1.00 86.58 ATOM 165 C PRO A 170 76.493 -5.959 57.973 1.00 90.74 ATOM 166 O PRO A 170 76.855 -7.113 58.196 1.00 94.10 ATOM 167 CB PRO A 170 78.653 -4.645 58.128 1.00 87.01 ATOM 168 CG PRO A 170 79.047 -3.290 57.631 1.00 85.45 ATOM 169 CD PRO A 170 77.713 -2.591 57.538 1.00 84.05 ATOM 170 N GLU A 171 75.288 -5.507 58.309 1.00 91.94 ATOM 171 CA GLU A 171 74.328 -6.366 58.996 1.00 96.47 ATOM 172 C GLU A 171 73.048 -6.657 58.203 1.00 98.28 ATOM 173 O GLU A 171 71.943 -6.421 58.694 1.00 99.54 ATOM 174 CB GLU A 171 73.948 -5.754 60.353 1.00 97.57 ATOM 175 CG GLU A 171 75.117 -5.481 61.299 1.00 95.87 ATOM 176 CD GLU A 171 75.825 -4.168 61.009 1.00 97.39 ATOM 177 OE1 GLU A 171 75.167 -3.107 61.072 1.00 97.53 ATOM 178 OE2 GLU A 171 77.040 -4.193 60.724 1.00 97.47 ATOM 179 N ASP A 172 73.192 -7.175 56.985 1.00 98.47 ATOM 180 CA ASP A 172 72.027 -7.500 56.161 1.00 96.41 ATOM 181 C ASP A 172 72.278 -8.786 55.372 1.00 94.77 ATOM 182 O ASP A 172 73.377 -8.991 54.857 1.00 95.50 ATOM 183 CB ASP A 172 71.720 -6.346 55.204 1.00 95.59 ATOM 184 CG ASP A 172 71.608 -5.009 55.918 1.00 93.71 ATOM 185 OD1 ASP A 172 72.653 -4.461 56.323 1.00 91.12 ATOM 186 OD2 ASP A 172 70.476 -4.510 56.083 1.00 90.18 ATOM 187 N LYS A 173 71.263 -9.645 55.278 1.00 91.91 ATOM 188 CA LYS A 173 71.396 -10.921 54.566 1.00 91.49 ATOM 189 C LYS A 173 70.156 -11.307 53.756 1.00 89.17 ATOM 190 O LYS A 173 69.176 -10.564 53.710 1.00 88.21 ATOM 191 CB LYS A 173 71.709 -12.042 55.563 1.00 93.69 ATOM 192 CG LYS A 173 72.944 -11.803 56.425 1.00 95.80 ATOM 193 CD LYS A 173 74.224 -11.843 55.605 1.00 98.09 ATOM 194 CE LYS A 173 75.441 -11.494 56.449 1.00 97.53 ATOM 195 NZ LYS A 173 75.378 -10.095 56.961 1.00 97.22 ATOM 196 N CYS A 174 70.210 -12.482 53.129 1.00 88.26 ATOM 197 CA CYS A 174 69.108 -12.994 52.309 1.00 86.78 ATOM 198 C CYS A 174 67.787 -12.951 53.073 1.00 85.57 ATOM 199 O CYS A 174 66.819 -13.616 52.704 1.00 84.91 ATOM 200 CB CYS A 174 69.405 -14.436 51.869 1.00 85.81 ATOM 201 SG CYS A 174 68.353 -15.103 50.535 1.00 84.40 ATOM 202 N PRO A 182 74.491 -12.568 52.755 1.00 68.26 ATOM 203 CA PRO A 182 75.191 -11.349 52.332 1.00 70.74 ATOM 204 C PRO A 182 74.437 -10.645 51.200 1.00 72.16 ATOM 205 O PRO A 182 73.681 -11.283 50.468 1.00 72.45 ATOM 206 CB PRO A 182 76.552 -11.874 51.883 1.00 72.07 ATOM 207 CG PRO A 182 76.749 -13.082 52.752 1.00 69.68 ATOM 208 CD PRO A 182 75.392 -13.733 52.713 1.00 69.68 ATOM 209 N LEU A 183 74.643 -9.337 51.059 1.00 67.96 ATOM 210 CA LEU A 183 73.968 -8.568 50.014 1.00 62.87 ATOM 211 C LEU A 183 74.899 -7.620 49.267 1.00 60.82 ATOM 212 O LEU A 183 75.735 -6.945 49.870 1.00 57.70 ATOM 213 CB LEU A 183 72.825 -7.748 50.611 1.00 63.86 ATOM 214 CG LEU A 183 71.714 -8.479 51.361 1.00 65.15 ATOM 215 CD1 LEU A 183 70.771 -7.453 51.974 1.00 66.08 ATOM 216 CD2 LEU A 183 70.964 -9.398 50.421 1.00 62.90 ATOM 217 N ARG A 184 74.740 -7.568 47.947 1.00 55.56 ATOM 218 CA ARG A 184 75.547 -6.686 47.113 1.00 48.27 ATOM 219 C ARG A 184 74.637 -5.950 46.132 1.00 41.47 ATOM 220 O ARG A 184 73.537 -6.412 45.827 1.00 41.52 ATOM 221 CB ARG A 184 76.593 -7.482 46.329 1.00 47.12 ATOM 222 CG ARG A 184 75.995 -8.467 45.343 1.00 44.38 ATOM 223 CD ARG A 184 76.957 -8.789 44.209 1.00 53.81 ATOM 224 NE ARG A 184 76.878 -7.815 43.120 1.00 52.70 ATOM 225 CZ ARG A 184 77.381 -8.017 41.904 1.00 54.71 ATOM 226 NH1 ARG A 184 78.000 -9.156 41.621 1.00 40.38 ATOM 227 NH2 ARG A 184 77.260 -7.088 40.966 1.00 47.01 ATOM 228 N PRO A 185 75.088 -4.792 45.629 1.00 38.01 ATOM 229 CA PRO A 185 74.305 -3.999 44.679 1.00 41.20 ATOM 230 C PRO A 185 73.901 -4.826 43.463 1.00 41.88 ATOM 231 O PRO A 185 74.697 -5.621 42.959 1.00 45.48 ATOM 232 CB PRO A 185 75.263 -2.875 44.302 1.00 39.42 ATOM 233 CG PRO A 185 76.079 -2.701 45.540 1.00 45.57 ATOM 234 CD PRO A 185 76.366 -4.126 45.932 1.00 39.10 ATOM 235 N HIS A 186 72.666 -4.643 43.003 1.00 38.52 ATOM 236 CA HIS A 186 72.180 -5.357 41.828 1.00 39.45 ATOM 237 C HIS A 186 72.602 -4.546 40.601 1.00 36.59 ATOM 238 O HIS A 186 71.777 -4.124 39.788 1.00 34.03 ATOM 239 CB HIS A 186 70.662 -5.494 41.884 1.00 39.36 ATOM 240 CG HIS A 186 70.091 -6.379 40.824 1.00 39.22 ATOM 241 ND1 HIS A 186 70.519 -7.678 40.626 1.00 40.02 ATOM 242 CD2 HIS A 186 69.102 -6.171 39.923 1.00 37.65 ATOM 243 CE1 HIS A 186 69.815 -8.227 39.654 1.00 42.87 ATOM 244 NE2 HIS A 186 68.948 -7.333 39.210 1.00 42.03 ATOM 245 N VAL A 187 73.907 -4.331 40.496 1.00 33.57 ATOM 246 CA VAL A 187 74.511 -3.569 39.403 1.00 35.47 ATOM 247 C VAL A 187 75.491 -4.479 38.663 1.00 41.00 ATOM 248 O VAL A 187 76.345 -5.109 39.290 1.00 35.05 ATOM 249 CB VAL A 187 75.279 -2.344 39.959 1.00 33.97 ATOM 250 CG1 VAL A 187 76.062 -1.653 38.856 1.00 30.99 ATOM 251 CG2 VAL A 187 74.298 -1.375 40.604 1.00 38.49 ATOM 252 ZN ZN A1001 70.910 -15.375 50.393 1.00113.76 TER