HEADER RIBOSOME 29-MAY-14 1VXV TITLE Structures of yeast 80S ribosome-tRNA complexes in the rotated and TITLE 2 non-rotated conformations (Class II - rotated ribosome with 1 tRNA, TITLE 3 this entry contains the large ribosomal subunit proteins) COMPND MOL_ID: 41; COMPND 2 MOLECULE: 60S ribosomal protein L41; COMPND 3 CHAIN: o; EXPDTA ELECTRON MICROSCOPY DBREF 1VXV o 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 o 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 o 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET o 1 167.803 143.703 210.736 1.00567.54 ATOM 2 CA MET o 1 168.471 144.681 211.646 1.00567.47 ATOM 3 C MET o 1 167.504 145.281 212.686 1.00567.50 ATOM 4 O MET o 1 166.279 145.240 212.510 1.00567.57 ATOM 5 CB MET o 1 169.123 145.801 210.823 1.00567.43 ATOM 6 CG MET o 1 168.194 146.507 209.836 1.00567.47 ATOM 7 SD MET o 1 169.007 147.888 208.993 1.00567.42 ATOM 8 CE MET o 1 168.740 149.229 210.176 1.00567.32 ATOM 9 N ARG o 2 168.054 145.837 213.768 1.00568.11 ATOM 10 CA ARG o 2 167.224 146.418 214.828 1.00568.12 ATOM 11 C ARG o 2 166.431 147.645 214.364 1.00568.16 ATOM 12 O ARG o 2 166.946 148.497 213.631 1.00568.14 ATOM 13 CB ARG o 2 168.078 146.791 216.049 1.00568.04 ATOM 14 CG ARG o 2 167.239 147.128 217.279 1.00568.04 ATOM 15 CD ARG o 2 168.080 147.537 218.480 1.00568.03 ATOM 16 NE ARG o 2 167.247 147.703 219.676 1.00567.94 ATOM 17 CZ ARG o 2 167.685 148.131 220.859 1.00567.92 ATOM 18 NH1 ARG o 2 168.963 148.444 221.023 1.00567.98 ATOM 19 NH2 ARG o 2 166.841 148.248 221.877 1.00567.84 ATOM 20 N ALA o 3 165.176 147.722 214.809 1.00561.69 ATOM 21 CA ALA o 3 164.276 148.821 214.460 1.00561.75 ATOM 22 C ALA o 3 164.556 150.125 215.229 1.00561.70 ATOM 23 O ALA o 3 163.907 151.148 214.989 1.00561.71 ATOM 24 CB ALA o 3 162.813 148.381 214.668 1.00561.82 ATOM 25 N LYS o 4 165.519 150.083 216.150 1.00561.87 ATOM 26 CA LYS o 4 165.908 151.257 216.938 1.00561.81 ATOM 27 C LYS o 4 166.784 152.137 216.051 1.00561.77 ATOM 28 O LYS o 4 166.660 153.364 216.039 1.00561.76 ATOM 29 CB LYS o 4 166.712 150.821 218.168 1.00561.75 ATOM 30 CG LYS o 4 167.253 151.970 219.019 1.00561.68 ATOM 31 CD LYS o 4 166.163 152.652 219.845 1.00561.68 ATOM 32 CE LYS o 4 165.603 151.711 220.915 1.00561.64 ATOM 33 NZ LYS o 4 164.668 152.400 221.853 1.00561.64 ATOM 34 N TRP o 5 167.674 151.472 215.317 1.00568.53 ATOM 35 CA TRP o 5 168.606 152.115 214.397 1.00568.48 ATOM 36 C TRP o 5 167.877 152.481 213.105 1.00568.53 ATOM 37 O TRP o 5 168.361 153.288 212.305 1.00568.50 ATOM 38 CB TRP o 5 169.763 151.157 214.090 1.00568.43 ATOM 39 CG TRP o 5 170.418 150.585 215.322 1.00568.37 ATOM 40 CD1 TRP o 5 170.916 149.318 215.475 1.00568.35 ATOM 41 CD2 TRP o 5 170.656 151.261 216.568 1.00568.32 ATOM 42 NE1 TRP o 5 171.446 149.162 216.735 1.00568.29 ATOM 43 CE2 TRP o 5 171.302 150.338 217.427 1.00568.28 ATOM 44 CE3 TRP o 5 170.390 152.557 217.044 1.00568.32 ATOM 45 CZ2 TRP o 5 171.683 150.671 218.739 1.00568.23 ATOM 46 CZ3 TRP o 5 170.770 152.885 218.347 1.00568.27 ATOM 47 CH2 TRP o 5 171.410 151.943 219.176 1.00568.23 ATOM 48 N ARG o 6 166.710 151.869 212.913 1.00589.20 ATOM 49 CA ARG o 6 165.864 152.098 211.742 1.00589.25 ATOM 50 C ARG o 6 165.229 153.491 211.840 1.00589.28 ATOM 51 O ARG o 6 165.116 154.212 210.841 1.00589.30 ATOM 52 CB ARG o 6 164.777 151.007 211.687 1.00589.32 ATOM 53 CG ARG o 6 163.682 151.175 210.626 1.00589.40 ATOM 54 CD ARG o 6 164.177 150.883 209.214 1.00589.42 ATOM 55 NE ARG o 6 163.092 150.897 208.227 1.00589.51 ATOM 56 CZ ARG o 6 162.321 151.951 207.954 1.00589.55 ATOM 57 NH1 ARG o 6 162.498 153.103 208.593 1.00589.51 ATOM 58 NH2 ARG o 6 161.369 151.858 207.031 1.00589.64 ATOM 59 N LYS o 7 164.831 153.854 213.059 1.00559.34 ATOM 60 CA LYS o 7 164.200 155.141 213.343 1.00559.37 ATOM 61 C LYS o 7 165.228 156.276 213.428 1.00559.29 ATOM 62 O LYS o 7 164.887 157.448 213.248 1.00559.31 ATOM 63 CB LYS o 7 163.411 155.041 214.656 1.00559.39 ATOM 64 CG LYS o 7 162.601 156.278 215.027 1.00559.42 ATOM 65 CD LYS o 7 161.684 156.006 216.219 1.00559.41 ATOM 66 CE LYS o 7 160.741 157.177 216.473 1.00559.45 ATOM 67 NZ LYS o 7 159.797 156.925 217.605 1.00559.49 ATOM 68 N LYS o 8 166.483 155.914 213.693 1.00560.54 ATOM 69 CA LYS o 8 167.569 156.886 213.815 1.00560.47 ATOM 70 C LYS o 8 168.168 157.242 212.450 1.00560.47 ATOM 71 O LYS o 8 168.590 158.382 212.223 1.00560.44 ATOM 72 CB LYS o 8 168.661 156.329 214.743 1.00560.39 ATOM 73 CG LYS o 8 169.400 157.389 215.557 1.00560.32 ATOM 74 CD LYS o 8 170.414 156.771 216.525 1.00560.24 ATOM 75 CE LYS o 8 170.858 157.771 217.597 1.00560.20 ATOM 76 NZ LYS o 8 171.488 159.003 217.031 1.00560.16 ATOM 77 N ARG o 9 168.200 156.255 211.553 1.00559.71 ATOM 78 CA ARG o 9 168.724 156.427 210.194 1.00559.71 ATOM 79 C ARG o 9 167.823 157.387 209.409 1.00559.76 ATOM 80 O ARG o 9 168.305 158.329 208.767 1.00559.74 ATOM 81 CB ARG o 9 168.782 155.069 209.474 1.00559.75 ATOM 82 CG ARG o 9 169.334 155.122 208.045 1.00559.72 ATOM 83 CD ARG o 9 168.925 153.892 207.224 1.00559.78 ATOM 84 NE ARG o 9 169.628 152.666 207.605 1.00559.77 ATOM 85 CZ ARG o 9 170.911 152.414 207.349 1.00559.71 ATOM 86 NH1 ARG o 9 171.662 153.304 206.705 1.00559.64 ATOM 87 NH2 ARG o 9 171.443 151.259 207.728 1.00559.72 ATOM 88 N THR o 10 166.514 157.140 209.472 1.00566.78 ATOM 89 CA THR o 10 165.531 157.971 208.776 1.00566.84 ATOM 90 C THR o 10 165.264 159.279 209.517 1.00566.81 ATOM 91 O THR o 10 164.607 160.179 208.988 1.00566.83 ATOM 92 CB THR o 10 164.183 157.224 208.590 1.00566.93 ATOM 93 OG1 THR o 10 163.638 156.870 209.872 1.00566.97 ATOM 94 CG2 THR o 10 164.386 155.972 207.747 1.00566.94 ATOM 95 N ARG o 11 165.771 159.374 210.744 1.00571.06 ATOM 96 CA ARG o 11 165.601 160.570 211.567 1.00571.03 ATOM 97 C ARG o 11 166.492 161.684 210.993 1.00570.97 ATOM 98 O ARG o 11 166.090 162.855 210.937 1.00570.98 ATOM 99 CB ARG o 11 165.997 160.266 213.022 1.00570.98 ATOM 100 CG ARG o 11 165.266 161.094 214.085 1.00571.03 ATOM 101 CD ARG o 11 163.794 160.683 214.232 1.00571.11 ATOM 102 NE ARG o 11 163.105 161.390 215.318 1.00571.15 ATOM 103 CZ ARG o 11 163.412 161.285 216.611 1.00571.13 ATOM 104 NH1 ARG o 11 164.407 160.497 217.006 1.00571.05 ATOM 105 NH2 ARG o 11 162.721 161.970 217.516 1.00571.17 ATOM 106 N ARG o 12 167.693 161.295 210.553 1.00559.44 ATOM 107 CA ARG o 12 168.668 162.220 209.963 1.00559.38 ATOM 108 C ARG o 12 168.211 162.623 208.566 1.00559.43 ATOM 109 O ARG o 12 168.473 163.738 208.106 1.00559.41 ATOM 110 CB ARG o 12 170.044 161.558 209.817 1.00559.32 ATOM 111 CG ARG o 12 170.503 160.722 210.991 1.00559.26 ATOM 112 CD ARG o 12 171.685 159.848 210.575 1.00559.22 ATOM 113 NE ARG o 12 171.934 158.774 211.536 1.00559.15 ATOM 114 CZ ARG o 12 172.749 157.743 211.311 1.00559.13 ATOM 115 NH1 ARG o 12 173.402 157.641 210.152 1.00559.16 ATOM 116 NH2 ARG o 12 172.909 156.805 212.240 1.00559.07 ATOM 117 N LEU o 13 167.549 161.685 207.893 1.00562.26 ATOM 118 CA LEU o 13 167.052 161.892 206.541 1.00562.31 ATOM 119 C LEU o 13 165.793 162.759 206.455 1.00562.35 ATOM 120 O LEU o 13 165.517 163.335 205.402 1.00562.36 ATOM 121 CB LEU o 13 166.822 160.535 205.856 1.00562.37 ATOM 122 CG LEU o 13 168.059 159.912 205.189 1.00562.42 ATOM 123 CD1 LEU o 13 168.469 160.780 204.004 1.00562.50 ATOM 124 CD2 LEU o 13 169.214 159.784 206.185 1.00562.38 ATOM 125 N LYS o 14 165.025 162.852 207.542 1.00569.27 ATOM 126 CA LYS o 14 163.833 163.706 207.534 1.00569.32 ATOM 127 C LYS o 14 164.360 165.138 207.653 1.00569.26 ATOM 128 O LYS o 14 163.858 166.070 207.014 1.00569.28 ATOM 129 CB LYS o 14 162.914 163.399 208.725 1.00569.36 ATOM 130 CG LYS o 14 162.259 162.023 208.706 1.00569.45 ATOM 131 CD LYS o 14 161.272 161.861 209.865 1.00569.50 ATOM 132 CE LYS o 14 161.958 161.943 211.235 1.00569.45 ATOM 133 NZ LYS o 14 160.989 161.828 212.374 1.00569.50 ATOM 134 N ARG o 15 165.395 165.280 208.480 1.00580.56 ATOM 135 CA ARG o 15 166.061 166.555 208.731 1.00580.50 ATOM 136 C ARG o 15 166.924 166.935 207.515 1.00580.47 ATOM 137 O ARG o 15 167.173 168.116 207.256 1.00580.45 ATOM 138 CB ARG o 15 166.926 166.424 209.993 1.00580.43 ATOM 139 CG ARG o 15 167.788 167.633 210.328 1.00580.36 ATOM 140 CD ARG o 15 168.623 167.368 211.576 1.00580.31 ATOM 141 NE ARG o 15 169.475 166.185 211.437 1.00580.29 ATOM 142 CZ ARG o 15 170.237 165.686 212.409 1.00580.25 ATOM 143 NH1 ARG o 15 170.258 166.266 213.603 1.00580.22 ATOM 144 NH2 ARG o 15 170.978 164.606 212.187 1.00580.25 ATOM 145 N LYS o 16 167.362 165.918 206.773 1.00582.56 ATOM 146 CA LYS o 16 168.190 166.105 205.583 1.00582.54 ATOM 147 C LYS o 16 167.341 166.603 204.405 1.00582.61 ATOM 148 O LYS o 16 167.755 167.502 203.669 1.00582.59 ATOM 149 CB LYS o 16 168.884 164.783 205.217 1.00582.52 ATOM 150 CG LYS o 16 169.908 164.886 204.084 1.00582.43 ATOM 151 CD LYS o 16 170.607 163.549 203.828 1.00582.41 ATOM 152 CE LYS o 16 171.615 163.639 202.676 1.00582.35 ATOM 153 NZ LYS o 16 170.979 163.936 201.356 1.00582.37 ATOM 154 N ARG o 17 166.152 166.020 204.244 1.00562.50 ATOM 155 CA ARG o 17 165.238 166.397 203.164 1.00562.57 ATOM 156 C ARG o 17 164.521 167.716 203.454 1.00562.58 ATOM 157 O ARG o 17 163.913 168.316 202.558 1.00562.60 ATOM 158 CB ARG o 17 164.187 165.299 202.936 1.00562.65 ATOM 159 CG ARG o 17 164.699 164.036 202.248 1.00562.64 ATOM 160 CD ARG o 17 163.576 163.002 202.064 1.00562.71 ATOM 161 NE ARG o 17 163.159 162.392 203.329 1.00562.77 ATOM 162 CZ ARG o 17 162.211 161.462 203.452 1.00562.81 ATOM 163 NH1 ARG o 17 161.556 161.017 202.384 1.00562.81 ATOM 164 NH2 ARG o 17 161.924 160.967 204.652 1.00562.86 ATOM 165 N ARG o 18 164.595 168.157 204.709 1.00580.51 ATOM 166 CA ARG o 18 163.956 169.399 205.140 1.00580.51 ATOM 167 C ARG o 18 164.872 170.598 204.869 1.00580.44 ATOM 168 O ARG o 18 164.397 171.691 204.551 1.00580.47 ATOM 169 CB ARG o 18 163.616 169.321 206.635 1.00580.48 ATOM 170 CG ARG o 18 162.605 170.362 207.124 1.00580.55 ATOM 171 CD ARG o 18 162.467 170.326 208.642 1.00580.52 ATOM 172 NE ARG o 18 162.187 168.979 209.140 1.00580.53 ATOM 173 CZ ARG o 18 162.037 168.664 210.425 1.00580.48 ATOM 174 NH1 ARG o 18 162.137 169.601 211.361 1.00580.42 ATOM 175 NH2 ARG o 18 161.792 167.406 210.776 1.00580.49 ATOM 176 N LYS o 19 166.182 170.385 204.994 1.00573.44 ATOM 177 CA LYS o 19 167.164 171.440 204.752 1.00573.37 ATOM 178 C LYS o 19 167.420 171.637 203.254 1.00573.40 ATOM 179 O LYS o 19 167.857 172.708 202.822 1.00573.41 ATOM 180 CB LYS o 19 168.477 171.116 205.478 1.00573.29 ATOM 181 CG LYS o 19 168.541 171.614 206.929 1.00573.22 ATOM 182 CD LYS o 19 167.449 171.002 207.809 1.00573.21 ATOM 183 CE LYS o 19 167.362 171.676 209.185 1.00573.14 ATOM 184 NZ LYS o 19 168.597 171.550 210.018 1.00573.06 ATOM 185 N VAL o 20 167.140 170.596 202.471 1.00557.97 ATOM 186 CA VAL o 20 167.315 170.639 201.019 1.00558.00 ATOM 187 C VAL o 20 166.045 171.218 200.375 1.00558.07 ATOM 188 O VAL o 20 166.078 171.721 199.246 1.00558.08 ATOM 189 CB VAL o 20 167.610 169.216 200.443 1.00558.04 ATOM 190 CG1 VAL o 20 167.740 169.271 198.925 1.00558.04 ATOM 191 CG2 VAL o 20 168.899 168.668 201.044 1.00557.99 ATOM 192 N ARG o 21 164.935 171.154 201.113 1.00552.49 ATOM 193 CA ARG o 21 163.652 171.687 200.657 1.00552.57 ATOM 194 C ARG o 21 163.590 173.165 201.092 1.00552.54 ATOM 195 O ARG o 21 162.784 173.957 200.575 1.00552.58 ATOM 196 CB ARG o 21 162.502 170.874 201.279 1.00552.63 ATOM 197 CG ARG o 21 161.139 171.030 200.601 1.00552.71 ATOM 198 CD ARG o 21 160.088 170.121 201.253 1.00552.78 ATOM 199 NE ARG o 21 158.782 170.168 200.588 1.00552.86 ATOM 200 CZ ARG o 21 157.954 171.213 200.594 1.00552.92 ATOM 201 NH1 ARG o 21 156.792 171.140 199.952 1.00552.98 ATOM 202 NH2 ARG o 21 158.276 172.330 201.239 1.00552.93 ATOM 203 N ALA o 22 164.463 173.522 202.039 1.00555.76 ATOM 204 CA ALA o 22 164.571 174.887 202.559 1.00555.74 ATOM 205 C ALA o 22 165.616 175.625 201.713 1.00555.69 ATOM 206 O ALA o 22 165.766 176.850 201.800 1.00555.69 ATOM 207 CB ALA o 22 164.997 174.862 204.032 1.00555.68 ATOM 208 N ARG o 23 166.336 174.853 200.898 1.00565.97 ATOM 209 CA ARG o 23 167.355 175.380 199.991 1.00565.94 ATOM 210 C ARG o 23 166.602 176.045 198.836 1.00566.00 ATOM 211 O ARG o 23 167.190 176.766 198.017 1.00565.97 ATOM 212 CB ARG o 23 168.233 174.230 199.463 1.00565.92 ATOM 213 CG ARG o 23 169.228 174.628 198.370 1.00565.83 ATOM 214 CD ARG o 23 169.038 173.807 197.088 1.00565.83 ATOM 215 NE ARG o 23 169.641 172.475 197.155 1.00565.74 ATOM 216 CZ ARG o 23 170.952 172.232 197.125 1.00565.71 ATOM 217 NH1 ARG o 23 171.398 170.982 197.195 1.00565.63 ATOM 218 NH2 ARG o 23 171.822 173.235 197.028 1.00565.76 ATOM 219 N SER o 24 165.289 175.799 198.801 1.00576.01 ATOM 220 CA SER o 24 164.403 176.333 197.763 1.00576.08 ATOM 221 C SER o 24 163.531 177.519 198.227 1.00576.14 ATOM 222 O SER o 24 162.368 177.640 197.818 1.00576.21 ATOM 223 CB SER o 24 163.492 175.211 197.219 1.00576.13 ATOM 224 OG SER o 24 164.231 174.128 196.667 1.00576.20 ATOM 225 N LYS o 25 164.090 178.390 199.068 1.00597.23 ATOM 226 CA LYS o 25 163.345 179.554 199.555 1.00597.29 ATOM 227 C LYS o 25 164.247 180.794 199.712 1.00597.32 ATOM 228 O LYS o 25 165.482 180.618 199.828 1.00597.28 ATOM 229 CB LYS o 25 162.680 179.207 200.897 1.00597.25 ATOM 230 CG LYS o 25 161.462 180.058 201.254 1.00597.24 ATOM 231 CD LYS o 25 160.889 179.650 202.606 1.00597.21 ATOM 232 CE LYS o 25 160.414 178.200 202.608 1.00597.13 ATOM 233 NZ LYS o 25 159.926 177.777 203.953 1.00597.09 ATOM 234 OXT LYS o 25 163.712 181.931 199.725 1.00588.39 TER