HEADER OXIDOREDUCTASE 16-SEP-04 1W85 TITLE THE CRYSTAL STRUCTURE OF PYRUVATE DEHYDROGENASE E1 BOUND TO THE TITLE 2 PERIPHERAL SUBUNIT BINDING DOMAIN OF E2 COMPND MOL_ID: 3; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF COMPND 3 PYRUVATE; COMPND 4 CHAIN: I, J; COMPND 5 EC: 2.3.1.12; COMPND 6 PERIPHERAL SUBUNIT BINDING DOMAIN (PSBD), RESIDUES ; COMPND 7 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG J 25 REMARK 465 LEU J 26 REMARK 465 VAL J 27 REMARK 465 GLN J 28 DBREF 1W85 J 123 171 UNP P11961 ODP2_BACST 122 170 SEQRES 1 J 39 VAL ILE ALA MET PRO SER VAL ARG LYS TYR ALA ARG GLU SEQRES 2 J 39 LYS GLY VAL ASP ILE ARG LEU VAL GLN GLY THR GLY LYS SEQRES 3 J 39 ASN GLY ARG VAL LEU LYS GLU ASP ILE ASP ALA PHE LEU ATOM 1 N VAL J 129 69.155 172.466 127.624 1.00 46.28 ATOM 2 CA VAL J 129 68.551 171.116 127.407 1.00 46.25 ATOM 3 C VAL J 129 68.507 170.723 125.919 1.00 46.13 ATOM 4 O VAL J 129 68.492 171.584 125.031 1.00 46.06 ATOM 5 CB VAL J 129 67.115 171.028 128.011 1.00 46.36 ATOM 6 CG1 VAL J 129 67.175 170.984 129.541 1.00 46.46 ATOM 7 CG2 VAL J 129 66.216 172.176 127.520 1.00 46.50 ATOM 8 N ILE J 130 68.487 169.413 125.671 1.00 45.92 ATOM 9 CA ILE J 130 68.295 168.855 124.333 1.00 45.68 ATOM 10 C ILE J 130 67.226 167.763 124.377 1.00 45.55 ATOM 11 O ILE J 130 67.408 166.731 125.013 1.00 45.57 ATOM 12 CB ILE J 130 69.599 168.326 123.770 1.00 45.70 ATOM 13 N ALA J 131 66.114 168.010 123.692 1.00 45.29 ATOM 14 CA ALA J 131 64.964 167.114 123.678 1.00 45.08 ATOM 15 C ALA J 131 64.136 167.312 122.415 1.00 44.98 ATOM 16 O ALA J 131 64.035 168.429 121.900 1.00 44.85 ATOM 17 CB ALA J 131 64.098 167.333 124.902 1.00 45.05 ATOM 18 N MET J 132 63.551 166.224 121.927 1.00 44.77 ATOM 19 CA MET J 132 62.641 166.275 120.794 1.00 44.73 ATOM 20 C MET J 132 61.385 167.082 121.135 1.00 44.93 ATOM 21 O MET J 132 60.924 167.081 122.276 1.00 44.77 ATOM 22 CB MET J 132 62.253 164.863 120.333 1.00 44.40 ATOM 23 CG MET J 132 63.403 164.032 119.770 1.00 44.16 ATOM 24 SD MET J 132 64.079 164.663 118.210 1.00 43.80 ATOM 25 CE MET J 132 62.625 164.579 117.138 1.00 43.91 ATOM 26 N PRO J 133 60.841 167.765 120.138 1.00 45.13 ATOM 27 CA PRO J 133 59.619 168.565 120.286 1.00 45.41 ATOM 28 C PRO J 133 58.446 167.838 120.990 1.00 45.69 ATOM 29 O PRO J 133 57.744 168.476 121.765 1.00 45.62 ATOM 30 CB PRO J 133 59.251 168.842 118.827 1.00 45.35 ATOM 31 CG PRO J 133 60.561 168.928 118.157 1.00 45.22 ATOM 32 CD PRO J 133 61.362 167.831 118.761 1.00 45.23 ATOM 33 N SER J 134 58.246 166.549 120.724 1.00 46.07 ATOM 34 CA SER J 134 57.149 165.788 121.333 1.00 46.49 ATOM 35 C SER J 134 57.232 165.765 122.864 1.00 46.89 ATOM 36 O SER J 134 56.202 165.779 123.549 1.00 46.97 ATOM 37 CB SER J 134 57.134 164.357 120.801 1.00 46.44 ATOM 38 OG SER J 134 58.255 163.620 121.261 1.00 46.30 ATOM 39 N VAL J 135 58.463 165.729 123.371 1.00 47.22 ATOM 40 CA VAL J 135 58.764 165.705 124.794 1.00 47.82 ATOM 41 C VAL J 135 58.492 167.064 125.447 1.00 48.24 ATOM 42 O VAL J 135 57.856 167.130 126.504 1.00 48.18 ATOM 43 CB VAL J 135 60.233 165.278 125.057 1.00 47.73 ATOM 44 CG1 VAL J 135 60.495 165.115 126.548 1.00 47.67 ATOM 45 CG2 VAL J 135 60.575 163.995 124.288 1.00 47.57 ATOM 46 N ARG J 136 58.980 168.129 124.803 1.00 48.78 ATOM 47 CA ARG J 136 58.776 169.511 125.254 1.00 49.31 ATOM 48 C ARG J 136 57.286 169.871 125.350 1.00 49.82 ATOM 49 O ARG J 136 56.871 170.558 126.287 1.00 49.92 ATOM 50 CB ARG J 136 59.505 170.498 124.329 1.00 49.10 ATOM 51 CG ARG J 136 61.028 170.325 124.284 1.00 48.92 ATOM 52 CD ARG J 136 61.730 171.377 123.448 1.00 48.81 ATOM 53 NE ARG J 136 63.181 171.191 123.368 1.00 48.70 ATOM 54 CZ ARG J 136 64.085 171.913 124.036 1.00 48.70 ATOM 55 NH1 ARG J 136 63.709 172.896 124.858 1.00 48.67 ATOM 56 NH2 ARG J 136 65.375 171.651 123.882 1.00 48.59 ATOM 57 N LYS J 137 56.489 169.411 124.387 1.00 50.45 ATOM 58 CA LYS J 137 55.030 169.568 124.459 1.00 51.25 ATOM 59 C LYS J 137 54.390 168.671 125.545 1.00 51.70 ATOM 60 O LYS J 137 53.332 169.015 126.096 1.00 51.87 ATOM 61 CB LYS J 137 54.392 169.290 123.095 1.00 51.22 ATOM 62 CG LYS J 137 52.887 169.554 123.025 1.00 51.36 ATOM 63 CD LYS J 137 52.593 170.916 122.411 1.00 51.44 ATOM 64 CE LYS J 137 51.205 171.404 122.792 1.00 51.51 ATOM 65 NZ LYS J 137 51.256 172.357 123.941 1.00 51.56 ATOM 66 N TYR J 138 55.023 167.534 125.851 1.00 52.27 ATOM 67 CA TYR J 138 54.564 166.689 126.949 1.00 52.84 ATOM 68 C TYR J 138 54.889 167.383 128.262 1.00 53.18 ATOM 69 O TYR J 138 54.002 167.619 129.087 1.00 53.41 ATOM 70 CB TYR J 138 55.166 165.296 126.882 1.00 52.76 ATOM 71 N ALA J 139 56.170 167.703 128.438 1.00 53.67 ATOM 72 CA ALA J 139 56.654 168.505 129.548 1.00 54.16 ATOM 73 C ALA J 139 56.218 169.972 129.393 1.00 54.54 ATOM 74 O ALA J 139 57.051 170.873 129.242 1.00 54.61 ATOM 75 CB ALA J 139 58.167 168.390 129.668 1.00 54.03 ATOM 76 N ARG J 140 54.905 170.195 129.432 1.00 54.83 ATOM 77 CA ARG J 140 54.326 171.505 129.186 1.00 55.45 ATOM 78 C ARG J 140 52.825 171.419 129.377 1.00 55.74 ATOM 79 O ARG J 140 52.238 172.182 130.154 1.00 55.87 ATOM 80 N GLU J 141 52.210 170.481 128.660 1.00 56.03 ATOM 81 CA GLU J 141 50.807 170.143 128.853 1.00 56.31 ATOM 82 C GLU J 141 50.558 169.642 130.286 1.00 56.49 ATOM 83 O GLU J 141 49.497 169.905 130.868 1.00 56.53 ATOM 84 CB GLU J 141 50.365 169.115 127.823 1.00 56.26 ATOM 85 N LYS J 142 51.541 168.924 130.840 1.00 56.56 ATOM 86 CA LYS J 142 51.430 168.332 132.177 1.00 56.61 ATOM 87 C LYS J 142 52.084 169.176 133.293 1.00 56.58 ATOM 88 O LYS J 142 51.935 168.865 134.477 1.00 56.59 ATOM 89 CB LYS J 142 51.992 166.888 132.171 1.00 56.66 ATOM 90 N GLY J 143 52.802 170.235 132.910 1.00 56.50 ATOM 91 CA GLY J 143 53.292 171.237 133.852 1.00 56.23 ATOM 92 C GLY J 143 54.687 171.032 134.428 1.00 56.01 ATOM 93 O GLY J 143 54.950 171.412 135.573 1.00 56.10 ATOM 94 N VAL J 144 55.578 170.435 133.641 1.00 55.58 ATOM 95 CA VAL J 144 56.954 170.166 134.067 1.00 55.02 ATOM 96 C VAL J 144 57.916 171.249 133.543 1.00 54.35 ATOM 97 O VAL J 144 57.484 172.221 132.917 1.00 54.60 ATOM 98 CB VAL J 144 57.411 168.743 133.621 1.00 55.25 ATOM 99 CG1 VAL J 144 58.478 168.190 134.552 1.00 55.34 ATOM 100 CG2 VAL J 144 56.219 167.783 133.536 1.00 55.37 ATOM 101 N ASP J 145 59.211 171.074 133.802 1.00 53.26 ATOM 102 CA ASP J 145 60.263 171.982 133.344 1.00 51.87 ATOM 103 C ASP J 145 61.606 171.286 133.469 1.00 50.37 ATOM 104 O ASP J 145 61.722 170.340 134.253 1.00 50.42 ATOM 105 CB ASP J 145 60.234 173.311 134.123 1.00 52.77 ATOM 106 CG ASP J 145 61.595 174.020 134.166 1.00 53.18 ATOM 107 OD1 ASP J 145 62.188 174.271 133.090 1.00 53.55 ATOM 108 OD2 ASP J 145 62.153 174.365 135.231 1.00 53.49 ATOM 109 N ILE J 146 62.671 171.744 132.805 1.00 47.75 ATOM 110 CA ILE J 146 64.036 171.181 132.755 1.00 44.84 ATOM 111 C ILE J 146 64.030 169.787 132.111 1.00 45.58 ATOM 112 O ILE J 146 65.007 169.385 131.477 1.00 46.28 ATOM 113 CB ILE J 146 64.580 171.058 134.187 1.00 41.81 ATOM 114 CG1 ILE J 146 66.003 170.500 134.243 1.00 39.89 ATOM 115 CG2 ILE J 146 63.738 170.129 135.067 1.00 40.40 ATOM 116 CD1 ILE J 146 66.544 170.385 135.670 1.00 39.26 ATOM 117 N GLY J 151 67.158 163.331 132.179 1.00 58.24 ATOM 118 CA GLY J 151 66.937 162.710 130.882 1.00 58.23 ATOM 119 C GLY J 151 67.831 161.504 130.644 1.00 58.26 ATOM 120 O GLY J 151 69.060 161.635 130.599 1.00 58.23 ATOM 121 N THR J 152 67.218 160.331 130.490 1.00 58.26 ATOM 122 CA THR J 152 67.973 159.074 130.389 1.00 58.30 ATOM 123 C THR J 152 68.473 158.790 128.962 1.00 58.32 ATOM 124 O THR J 152 69.358 157.954 128.771 1.00 58.38 ATOM 125 CB THR J 152 67.125 157.870 130.922 1.00 58.31 ATOM 126 OG1 THR J 152 65.818 157.875 130.332 1.00 58.23 ATOM 127 CG2 THR J 152 66.852 158.022 132.416 1.00 58.31 ATOM 128 N GLY J 153 67.906 159.484 127.973 1.00 58.36 ATOM 129 CA GLY J 153 68.308 159.335 126.580 1.00 58.37 ATOM 130 C GLY J 153 69.735 159.770 126.283 1.00 58.47 ATOM 131 O GLY J 153 70.442 160.271 127.166 1.00 58.35 ATOM 132 N LYS J 154 70.150 159.575 125.029 1.00 58.61 ATOM 133 CA LYS J 154 71.514 159.876 124.572 1.00 58.69 ATOM 134 C LYS J 154 71.889 161.344 124.778 1.00 58.79 ATOM 135 O LYS J 154 71.171 162.245 124.326 1.00 58.86 ATOM 136 CB LYS J 154 71.679 159.479 123.101 1.00 58.71 ATOM 137 N ASN J 155 73.014 161.566 125.463 1.00 58.87 ATOM 138 CA ASN J 155 73.513 162.911 125.826 1.00 58.97 ATOM 139 C ASN J 155 72.633 163.644 126.850 1.00 58.97 ATOM 140 O ASN J 155 72.683 164.871 126.964 1.00 59.02 ATOM 141 CB ASN J 155 73.690 163.796 124.583 1.00 59.04 ATOM 142 CG ASN J 155 74.671 163.221 123.597 1.00 59.11 ATOM 143 OD1 ASN J 155 74.671 162.011 123.333 1.00 59.20 ATOM 144 ND2 ASN J 155 75.521 164.081 123.042 1.00 59.10 ATOM 145 N GLY J 156 71.831 162.887 127.592 1.00 58.96 ATOM 146 CA GLY J 156 70.893 163.469 128.535 1.00 58.88 ATOM 147 C GLY J 156 69.639 163.980 127.841 1.00 58.85 ATOM 148 O GLY J 156 68.928 164.841 128.377 1.00 58.86 ATOM 149 N ARG J 157 69.364 163.451 126.647 1.00 58.75 ATOM 150 CA ARG J 157 68.114 163.754 125.955 1.00 58.62 ATOM 151 C ARG J 157 66.931 163.275 126.798 1.00 58.61 ATOM 152 O ARG J 157 66.871 162.120 127.221 1.00 58.47 ATOM 153 CB ARG J 157 68.077 163.129 124.557 1.00 58.54 ATOM 154 CG ARG J 157 66.953 163.668 123.665 1.00 58.47 ATOM 155 CD ARG J 157 66.660 162.827 122.435 1.00 58.34 ATOM 156 NE ARG J 157 67.893 162.476 121.742 1.00 58.25 ATOM 157 CZ ARG J 157 68.041 161.419 120.964 1.00 58.20 ATOM 158 NH1 ARG J 157 67.030 160.580 120.761 1.00 58.28 ATOM 159 NH2 ARG J 157 69.206 161.200 120.386 1.00 58.12 ATOM 160 N VAL J 158 65.993 164.181 127.032 1.00 58.59 ATOM 161 CA VAL J 158 64.850 163.889 127.877 1.00 58.69 ATOM 162 C VAL J 158 63.821 163.093 127.073 1.00 58.81 ATOM 163 O VAL J 158 63.421 163.510 125.988 1.00 58.87 ATOM 164 CB VAL J 158 64.251 165.195 128.454 1.00 58.55 ATOM 165 CG1 VAL J 158 63.070 164.898 129.359 1.00 58.49 ATOM 166 CG2 VAL J 158 65.320 165.967 129.213 1.00 58.43 ATOM 167 N LEU J 159 63.400 161.952 127.612 1.00 58.96 ATOM 168 CA LEU J 159 62.461 161.060 126.927 1.00 59.26 ATOM 169 C LEU J 159 61.060 161.095 127.544 1.00 59.53 ATOM 170 O LEU J 159 60.870 161.655 128.629 1.00 59.51 ATOM 171 CB LEU J 159 63.007 159.624 126.916 1.00 59.21 ATOM 172 CG LEU J 159 64.389 159.387 126.295 1.00 59.13 ATOM 173 CD1 LEU J 159 64.947 158.059 126.773 1.00 59.19 ATOM 174 CD2 LEU J 159 64.339 159.434 124.775 1.00 59.17 ATOM 175 N LYS J 160 60.090 160.496 126.845 1.00 59.90 ATOM 176 CA LYS J 160 58.694 160.395 127.312 1.00 60.35 ATOM 177 C LYS J 160 58.502 159.242 128.319 1.00 60.62 ATOM 178 O LYS J 160 57.464 158.554 128.335 1.00 60.71 ATOM 179 CB LYS J 160 57.735 160.248 126.119 1.00 60.31 ATOM 180 CG LYS J 160 56.325 160.794 126.360 1.00 60.41 ATOM 181 CD LYS J 160 55.296 160.105 125.454 1.00 60.43 ATOM 182 CE LYS J 160 53.952 160.848 125.436 1.00 60.48 ATOM 183 NZ LYS J 160 53.304 160.914 124.077 1.00 60.52 ATOM 184 N GLU J 161 59.521 159.045 129.154 1.00 60.96 ATOM 185 CA GLU J 161 59.477 158.120 130.288 1.00 61.26 ATOM 186 C GLU J 161 59.998 158.853 131.527 1.00 61.40 ATOM 187 O GLU J 161 59.493 158.650 132.636 1.00 61.47 ATOM 188 CB GLU J 161 60.274 156.829 130.009 1.00 61.26 ATOM 189 CG GLU J 161 61.634 157.045 129.351 1.00 61.40 ATOM 190 CD GLU J 161 62.549 155.831 129.436 1.00 61.52 ATOM 191 OE1 GLU J 161 63.236 155.663 130.474 1.00 61.45 ATOM 192 OE2 GLU J 161 62.579 155.043 128.459 1.00 61.55 ATOM 193 N ASP J 162 61.009 159.703 131.317 1.00 61.67 ATOM 194 CA ASP J 162 61.634 160.515 132.379 1.00 61.87 ATOM 195 C ASP J 162 60.728 161.645 132.886 1.00 61.96 ATOM 196 O ASP J 162 60.769 161.991 134.064 1.00 61.98 ATOM 197 CB ASP J 162 62.965 161.106 131.890 1.00 61.84 ATOM 198 CG ASP J 162 63.822 160.090 131.158 1.00 61.82 ATOM 199 OD1 ASP J 162 63.664 158.872 131.401 1.00 61.87 ATOM 200 OD2 ASP J 162 64.684 160.418 130.318 1.00 61.83 ATOM 201 N ILE J 163 59.918 162.212 131.994 1.00 62.18 ATOM 202 CA ILE J 163 58.895 163.188 132.381 1.00 62.35 ATOM 203 C ILE J 163 57.783 162.516 133.198 1.00 62.45 ATOM 204 O ILE J 163 57.253 163.106 134.149 1.00 62.47 ATOM 205 CB ILE J 163 58.330 163.929 131.130 1.00 62.37 ATOM 206 CG1 ILE J 163 59.395 164.848 130.507 1.00 62.32 ATOM 207 CG2 ILE J 163 57.044 164.708 131.468 1.00 62.37 ATOM 208 CD1 ILE J 163 60.220 165.642 131.508 1.00 62.33 ATOM 209 N ASP J 164 57.442 161.283 132.817 1.00 62.56 ATOM 210 CA ASP J 164 56.519 160.447 133.590 1.00 62.65 ATOM 211 C ASP J 164 57.160 159.949 134.902 1.00 62.66 ATOM 212 O ASP J 164 56.456 159.734 135.888 1.00 62.69 ATOM 213 CB ASP J 164 56.020 159.266 132.741 1.00 62.68 ATOM 214 CG ASP J 164 55.026 159.693 131.654 1.00 62.76 ATOM 215 OD1 ASP J 164 54.600 160.875 131.645 1.00 62.71 ATOM 216 OD2 ASP J 164 54.615 158.909 130.765 1.00 62.77 ATOM 217 N ALA J 165 58.484 159.771 134.904 1.00 62.67 ATOM 218 CA ALA J 165 59.225 159.408 136.113 1.00 62.69 ATOM 219 C ALA J 165 59.267 160.580 137.103 1.00 62.72 ATOM 220 O ALA J 165 58.877 160.429 138.270 1.00 62.78 ATOM 221 CB ALA J 165 60.629 158.933 135.766 1.00 62.67 ATOM 222 N PHE J 166 59.742 161.734 136.620 1.00 62.69 ATOM 223 CA PHE J 166 59.735 163.005 137.347 1.00 62.67 ATOM 224 C PHE J 166 58.350 163.369 137.876 1.00 62.68 ATOM 225 O PHE J 166 58.204 163.827 139.013 1.00 62.66 ATOM 226 CB PHE J 166 60.264 164.122 136.439 1.00 62.66 ATOM 227 CG PHE J 166 60.688 165.378 137.164 1.00 62.62 ATOM 228 CD1 PHE J 166 59.757 166.375 137.478 1.00 62.63 ATOM 229 CD2 PHE J 166 62.022 165.565 137.533 1.00 62.67 ATOM 230 CE1 PHE J 166 60.147 167.544 138.152 1.00 62.62 ATOM 231 CE2 PHE J 166 62.428 166.731 138.209 1.00 62.68 ATOM 232 CZ PHE J 166 61.485 167.723 138.518 1.00 62.66 ATOM 233 N LEU J 167 57.341 163.215 137.183 1.00 62.75 TER