HEADER OXIDOREDUCTASE 15-NOV-04 1Y07 TITLE Crystal structure of the superoxide reductase from Treponema pallidum COMPND MOL_ID: 1; COMPND 2 MOLECULE: desulfoferrodoxin (rbo); COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.2; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.55 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 DBREF 1Y07 A 1 128 UNP O83795 O83795_TREP 1 128 SEQRES 1 A 37 ARG GLU LEU SER PHE PHE LEU GLN LYS GLU SER ALA GLY SEQRES 2 A 37 PHE PHE LEU GLY MET ASP ALA PRO ALA GLY SER SER VAL SEQRES 3 A 37 ALA CYS GLY SER GLU VAL LEU ARG ALA VAL PRO ATOM 1 N ARG A 3 15.114 30.303 19.886 1.00 20.04 ATOM 2 CA ARG A 3 14.599 31.133 21.026 1.00 19.26 ATOM 3 C ARG A 3 15.394 30.854 22.316 1.00 18.12 ATOM 4 O ARG A 3 15.942 29.775 22.512 1.00 16.51 ATOM 5 CB ARG A 3 13.111 30.817 21.327 1.00 21.27 ATOM 6 CG ARG A 3 12.119 30.917 20.160 1.00 23.72 ATOM 7 CD ARG A 3 11.766 32.350 19.793 1.00 26.94 ATOM 8 NE ARG A 3 10.618 32.436 18.902 1.00 29.47 ATOM 9 CZ ARG A 3 9.829 33.504 18.783 1.00 32.61 ATOM 10 NH1 ARG A 3 10.065 34.613 19.485 1.00 33.06 ATOM 11 NH2 ARG A 3 8.798 33.483 17.921 1.00 33.61 ATOM 12 N GLU A 4 15.403 31.806 23.235 1.00 16.55 ATOM 13 CA GLU A 4 15.823 31.500 24.593 1.00 16.40 ATOM 14 C GLU A 4 14.674 30.813 25.354 1.00 14.12 ATOM 15 O GLU A 4 13.541 31.282 25.381 1.00 15.33 ATOM 16 CB GLU A 4 16.263 32.740 25.340 1.00 17.87 ATOM 17 CG GLU A 4 17.499 33.398 24.715 1.00 21.14 ATOM 18 CD GLU A 4 18.797 32.595 24.841 1.00 28.16 ATOM 19 OE1 GLU A 4 18.931 31.675 25.718 1.00 32.56 ATOM 20 OE2 GLU A 4 19.718 32.924 24.044 1.00 32.61 ATOM 21 N LEU A 5 15.026 29.720 25.998 1.00 13.17 ATOM 22 CA LEU A 5 14.127 28.884 26.766 1.00 13.51 ATOM 23 C LEU A 5 14.181 29.235 28.228 1.00 12.96 ATOM 24 O LEU A 5 15.248 29.522 28.808 1.00 12.53 ATOM 25 CB LEU A 5 14.451 27.381 26.599 1.00 14.78 ATOM 26 CG LEU A 5 14.461 26.910 25.173 1.00 17.43 ATOM 27 CD1 LEU A 5 14.799 25.414 25.175 1.00 17.82 ATOM 28 CD2 LEU A 5 13.088 27.151 24.504 1.00 20.77 ATOM 29 N SER A 6 13.013 29.207 28.834 1.00 12.22 ATOM 30 CA SER A 6 12.878 29.446 30.278 1.00 11.02 ATOM 31 C SER A 6 11.874 28.430 30.785 1.00 10.25 ATOM 32 O SER A 6 11.058 27.901 30.029 1.00 11.87 ATOM 33 CB SER A 6 12.375 30.856 30.579 1.00 11.09 ATOM 34 OG SER A 6 11.274 31.165 29.797 1.00 12.28 ATOM 35 N PHE A 7 11.950 28.167 32.074 1.00 10.17 ATOM 36 CA PHE A 7 11.163 27.134 32.719 1.00 10.04 ATOM 37 C PHE A 7 10.472 27.663 33.929 1.00 11.00 ATOM 38 O PHE A 7 11.120 28.163 34.842 1.00 12.72 ATOM 39 CB PHE A 7 12.093 25.986 33.113 1.00 10.22 ATOM 40 CG PHE A 7 12.918 25.487 31.959 1.00 10.96 ATOM 41 CD1 PHE A 7 14.182 25.958 31.732 1.00 13.06 ATOM 42 CD2 PHE A 7 12.358 24.607 31.055 1.00 13.88 ATOM 43 CE1 PHE A 7 14.924 25.492 30.616 1.00 13.02 ATOM 44 CE2 PHE A 7 13.093 24.186 29.938 1.00 14.14 ATOM 45 CZ PHE A 7 14.360 24.690 29.737 1.00 11.64 ATOM 46 N PHE A 8 9.160 27.512 33.953 1.00 11.44 ATOM 47 CA PHE A 8 8.325 27.947 35.087 1.00 11.65 ATOM 48 C PHE A 8 7.704 26.674 35.707 1.00 12.75 ATOM 49 O PHE A 8 6.969 25.948 35.049 1.00 13.25 ATOM 50 CB PHE A 8 7.264 28.878 34.580 1.00 11.72 ATOM 51 CG PHE A 8 7.834 30.060 33.825 1.00 11.12 ATOM 52 CD1 PHE A 8 8.211 29.959 32.481 1.00 14.70 ATOM 53 CD2 PHE A 8 7.958 31.309 34.481 1.00 12.97 ATOM 54 CE1 PHE A 8 8.767 31.077 31.808 1.00 13.38 ATOM 55 CE2 PHE A 8 8.494 32.430 33.810 1.00 13.09 ATOM 56 CZ PHE A 8 8.888 32.318 32.478 1.00 14.39 ATOM 57 N LEU A 9 8.066 26.359 36.924 1.00 16.12 ATOM 58 CA LEU A 9 7.774 25.019 37.409 1.00 17.89 ATOM 59 C LEU A 9 6.862 25.001 38.642 1.00 18.44 ATOM 60 O LEU A 9 7.222 25.446 39.689 1.00 18.95 ATOM 61 CB LEU A 9 9.088 24.224 37.595 1.00 18.58 ATOM 62 CG LEU A 9 9.968 24.195 36.325 1.00 19.78 ATOM 63 CD1 LEU A 9 11.331 23.603 36.618 1.00 21.42 ATOM 64 CD2 LEU A 9 9.294 23.425 35.179 1.00 20.53 ATOM 65 N GLN A 10 5.651 24.515 38.429 1.00 19.83 ATOM 66 CA GLN A 10 4.652 24.340 39.477 1.00 21.02 ATOM 67 C GLN A 10 5.032 23.219 40.429 1.00 22.43 ATOM 68 O GLN A 10 4.838 23.384 41.636 1.00 23.83 ATOM 69 CB GLN A 10 3.278 24.076 38.844 1.00 21.29 ATOM 70 CG GLN A 10 3.260 22.920 37.823 1.00 23.65 ATOM 71 CD GLN A 10 3.062 23.349 36.385 1.00 24.89 ATOM 72 OE1 GLN A 10 1.982 23.150 35.801 1.00 27.64 ATOM 73 NE2 GLN A 10 4.102 23.891 35.786 1.00 27.02 ATOM 74 N PHE A 16 4.296 21.783 33.832 1.00 18.81 ATOM 75 CA PHE A 16 5.404 22.759 33.713 1.00 17.83 ATOM 76 C PHE A 16 4.835 23.869 32.810 1.00 16.70 ATOM 77 O PHE A 16 3.838 23.645 32.128 1.00 15.14 ATOM 78 CB PHE A 16 6.707 22.112 33.097 1.00 18.31 ATOM 79 CG PHE A 16 6.442 21.290 31.836 1.00 19.60 ATOM 80 CD1 PHE A 16 6.293 21.918 30.586 1.00 19.19 ATOM 81 CD2 PHE A 16 6.311 19.884 31.903 1.00 19.84 ATOM 82 CE1 PHE A 16 5.962 21.158 29.432 1.00 19.80 ATOM 83 CE2 PHE A 16 6.019 19.121 30.738 1.00 20.85 ATOM 84 CZ PHE A 16 5.860 19.799 29.489 1.00 19.65 ATOM 85 N PHE A 17 5.484 25.033 32.780 1.00 15.12 ATOM 86 CA PHE A 17 5.377 25.918 31.618 1.00 14.21 ATOM 87 C PHE A 17 6.766 26.098 31.016 1.00 12.69 ATOM 88 O PHE A 17 7.696 26.320 31.714 1.00 12.58 ATOM 89 CB PHE A 17 4.803 27.293 31.925 1.00 14.24 ATOM 90 CG PHE A 17 3.465 27.257 32.560 1.00 13.36 ATOM 91 CD1 PHE A 17 3.350 26.811 33.864 1.00 14.46 ATOM 92 CD2 PHE A 17 2.339 27.644 31.863 1.00 11.12 ATOM 93 CE1 PHE A 17 2.122 26.760 34.497 1.00 15.30 ATOM 94 CE2 PHE A 17 1.065 27.599 32.496 1.00 13.60 ATOM 95 CZ PHE A 17 0.979 27.137 33.808 1.00 13.94 ATOM 96 N LEU A 18 6.819 26.176 29.703 1.00 12.71 ATOM 97 CA LEU A 18 8.021 26.432 28.953 1.00 14.22 ATOM 98 C LEU A 18 7.872 27.790 28.311 1.00 12.23 ATOM 99 O LEU A 18 6.875 28.062 27.632 1.00 12.08 ATOM 100 CB LEU A 18 8.120 25.354 27.869 1.00 15.66 ATOM 101 CG LEU A 18 9.495 24.860 27.561 1.00 22.11 ATOM 102 CD1 LEU A 18 9.285 23.493 26.835 1.00 23.25 ATOM 103 CD2 LEU A 18 10.213 25.832 26.726 1.00 26.89 ATOM 104 N GLY A 19 8.858 28.664 28.492 1.00 11.28 ATOM 105 CA GLY A 19 8.866 29.931 27.815 1.00 12.11 ATOM 106 C GLY A 19 9.852 30.008 26.699 1.00 12.13 ATOM 107 O GLY A 19 10.903 29.423 26.771 1.00 11.43 ATOM 108 N MET A 20 9.437 30.660 25.624 1.00 13.57 ATOM 109 CA MET A 20 10.238 30.866 24.418 1.00 14.98 ATOM 110 C MET A 20 10.279 32.376 24.236 1.00 13.38 ATOM 111 O MET A 20 9.279 32.989 23.969 1.00 13.05 ATOM 112 CB MET A 20 9.607 30.141 23.233 1.00 15.69 ATOM 113 CG MET A 20 9.892 28.638 23.277 1.00 23.74 ATOM 114 SD MET A 20 8.559 27.541 22.674 1.00 34.21 ATOM 115 CE MET A 20 7.154 28.018 23.910 1.00 32.30 ATOM 116 N ASP A 21 11.471 32.950 24.404 1.00 13.60 ATOM 117 CA ASP A 21 11.680 34.401 24.406 1.00 13.42 ATOM 118 C ASP A 21 10.797 35.116 25.395 1.00 12.67 ATOM 119 O ASP A 21 10.244 36.173 25.117 1.00 12.52 ATOM 120 CB ASP A 21 11.460 34.987 22.990 1.00 14.66 ATOM 121 CG ASP A 21 12.575 34.724 22.096 1.00 15.65 ATOM 122 OD1 ASP A 21 13.558 34.039 22.495 1.00 17.54 ATOM 123 OD2 ASP A 21 12.558 35.196 20.926 1.00 21.04 ATOM 124 N ALA A 22 10.674 34.554 26.584 1.00 10.61 ATOM 125 CA ALA A 22 9.928 35.217 27.623 1.00 10.93 ATOM 126 C ALA A 22 10.705 36.402 28.185 1.00 10.68 ATOM 127 O ALA A 22 11.906 36.264 28.468 1.00 11.20 ATOM 128 CB ALA A 22 9.606 34.244 28.736 1.00 10.21 ATOM 129 N PRO A 23 10.027 37.542 28.354 1.00 10.56 ATOM 130 CA PRO A 23 10.663 38.703 28.964 1.00 11.33 ATOM 131 C PRO A 23 11.123 38.351 30.360 1.00 11.80 ATOM 132 O PRO A 23 10.420 37.598 31.071 1.00 10.49 ATOM 133 CB PRO A 23 9.540 39.767 29.028 1.00 12.31 ATOM 134 CG PRO A 23 8.507 39.375 28.021 1.00 10.49 ATOM 135 CD PRO A 23 8.641 37.837 27.949 1.00 10.84 ATOM 136 N ALA A 24 12.265 38.909 30.759 1.00 12.19 ATOM 137 CA ALA A 24 12.704 38.817 32.127 1.00 14.28 ATOM 138 C ALA A 24 11.540 39.308 32.989 1.00 15.60 ATOM 139 O ALA A 24 10.801 40.248 32.647 1.00 18.06 ATOM 140 CB ALA A 24 13.957 39.683 32.370 1.00 14.50 ATOM 141 N GLY A 25 11.349 38.687 34.122 1.00 16.47 ATOM 142 CA GLY A 25 10.306 39.191 34.981 1.00 16.51 ATOM 143 C GLY A 25 8.909 38.738 34.620 1.00 15.86 ATOM 144 O GLY A 25 7.981 39.114 35.298 1.00 15.84 ATOM 145 N SER A 26 8.755 37.868 33.625 1.00 16.07 ATOM 146 CA SER A 26 7.471 37.221 33.364 1.00 15.05 ATOM 147 C SER A 26 7.081 36.410 34.594 1.00 15.77 ATOM 148 O SER A 26 7.945 35.835 35.270 1.00 15.08 ATOM 149 CB SER A 26 7.586 36.235 32.206 1.00 15.16 ATOM 150 OG SER A 26 7.796 36.895 30.983 1.00 13.47 ATOM 151 N SER A 27 5.790 36.313 34.831 1.00 16.56 ATOM 152 CA SER A 27 5.298 35.381 35.821 1.00 17.17 ATOM 153 C SER A 27 4.068 34.637 35.316 1.00 16.82 ATOM 154 O SER A 27 3.307 35.131 34.488 1.00 17.52 ATOM 155 CB SER A 27 5.022 36.124 37.120 1.00 17.87 ATOM 156 OG SER A 27 3.894 36.972 37.053 1.00 19.33 ATOM 157 N VAL A 28 3.864 33.457 35.844 1.00 15.16 ATOM 158 CA VAL A 28 2.716 32.659 35.485 1.00 14.55 ATOM 159 C VAL A 28 1.823 32.434 36.680 1.00 15.20 ATOM 160 O VAL A 28 2.264 31.879 37.687 1.00 16.07 ATOM 161 CB VAL A 28 3.144 31.271 34.975 1.00 14.30 ATOM 162 CG1 VAL A 28 1.917 30.424 34.696 1.00 13.21 ATOM 163 CG2 VAL A 28 4.074 31.434 33.733 1.00 12.05 ATOM 164 N ALA A 29 0.571 32.863 36.586 1.00 15.44 ATOM 165 CA ALA A 29 -0.458 32.426 37.558 1.00 15.75 ATOM 166 C ALA A 29 -0.994 31.061 37.127 1.00 17.41 ATOM 167 O ALA A 29 -1.793 30.959 36.176 1.00 15.53 ATOM 168 CB ALA A 29 -1.556 33.394 37.612 1.00 16.19 ATOM 169 N CYS A 30 -0.529 30.024 37.828 1.00 18.39 ATOM 170 CA CYS A 30 -0.792 28.654 37.463 1.00 19.30 ATOM 171 C CYS A 30 -1.802 28.212 38.458 1.00 19.74 ATOM 172 O CYS A 30 -1.442 27.718 39.546 1.00 20.12 ATOM 173 CB CYS A 30 0.490 27.827 37.572 1.00 19.78 ATOM 174 SG CYS A 30 0.256 26.006 37.306 1.00 21.67 ATOM 175 N GLY A 31 -3.068 28.422 38.108 1.00 19.98 ATOM 176 CA GLY A 31 -4.133 28.303 39.078 1.00 20.49 ATOM 177 C GLY A 31 -3.880 29.378 40.107 1.00 20.78 ATOM 178 O GLY A 31 -3.806 30.567 39.749 1.00 20.68 ATOM 179 N SER A 32 -3.734 28.961 41.363 1.00 20.90 ATOM 180 CA SER A 32 -3.455 29.875 42.479 1.00 21.48 ATOM 181 C SER A 32 -1.970 29.962 42.848 1.00 21.11 ATOM 182 O SER A 32 -1.622 30.605 43.817 1.00 20.53 ATOM 183 CB SER A 32 -4.242 29.434 43.715 1.00 21.65 ATOM 184 OG SER A 32 -3.734 28.213 44.229 1.00 24.44 ATOM 185 N GLU A 33 -1.095 29.302 42.086 1.00 21.97 ATOM 186 CA GLU A 33 0.348 29.391 42.275 1.00 21.87 ATOM 187 C GLU A 33 0.858 30.565 41.402 1.00 20.80 ATOM 188 O GLU A 33 0.216 30.911 40.387 1.00 21.70 ATOM 189 CB GLU A 33 0.996 28.041 41.851 1.00 22.42 ATOM 190 CG GLU A 33 1.606 27.213 42.969 1.00 24.78 ATOM 191 CD GLU A 33 2.335 25.967 42.446 1.00 27.25 ATOM 192 OE1 GLU A 33 1.688 25.165 41.729 1.00 28.42 ATOM 193 OE2 GLU A 33 3.543 25.776 42.744 1.00 28.27 ATOM 194 N VAL A 34 1.947 31.224 41.800 1.00 18.56 ATOM 195 CA VAL A 34 2.687 32.075 40.841 1.00 18.37 ATOM 196 C VAL A 34 4.081 31.499 40.563 1.00 18.47 ATOM 197 O VAL A 34 4.789 31.133 41.507 1.00 19.51 ATOM 198 CB VAL A 34 2.834 33.516 41.297 1.00 17.41 ATOM 199 CG1 VAL A 34 3.719 34.306 40.349 1.00 18.03 ATOM 200 CG2 VAL A 34 1.460 34.198 41.300 1.00 16.88 ATOM 201 N LEU A 35 4.469 31.460 39.298 1.00 18.75 ATOM 202 CA LEU A 35 5.743 30.832 38.890 1.00 18.48 ATOM 203 C LEU A 35 6.604 31.885 38.195 1.00 17.78 ATOM 204 O LEU A 35 6.109 32.634 37.377 1.00 17.18 ATOM 205 CB LEU A 35 5.484 29.651 37.934 1.00 19.93 ATOM 206 CG LEU A 35 4.421 28.617 38.330 1.00 20.37 ATOM 207 CD1 LEU A 35 4.118 27.668 37.170 1.00 21.75 ATOM 208 CD2 LEU A 35 4.879 27.914 39.557 1.00 23.11 ATOM 209 N ARG A 36 7.883 31.979 38.563 1.00 17.31 ATOM 210 CA ARG A 36 8.852 32.749 37.797 1.00 16.26 ATOM 211 C ARG A 36 9.940 31.823 37.205 1.00 14.67 ATOM 212 O ARG A 36 10.063 30.671 37.599 1.00 16.44 ATOM 213 CB ARG A 36 9.510 33.771 38.650 1.00 16.37 ATOM 214 CG ARG A 36 8.597 34.973 38.898 1.00 18.07 ATOM 215 CD ARG A 36 9.276 36.147 39.570 1.00 17.19 ATOM 216 NE ARG A 36 8.346 37.256 39.716 1.00 20.77 ATOM 217 CZ ARG A 36 7.337 37.236 40.559 1.00 23.96 ATOM 218 NH1 ARG A 36 7.119 36.156 41.330 1.00 25.23 ATOM 219 NH2 ARG A 36 6.526 38.294 40.638 1.00 25.35 ATOM 220 N ALA A 37 10.727 32.350 36.270 1.00 13.57 ATOM 221 CA ALA A 37 11.708 31.506 35.578 1.00 12.40 ATOM 222 C ALA A 37 12.713 31.007 36.577 1.00 13.07 ATOM 223 O ALA A 37 13.194 31.738 37.410 1.00 12.91 ATOM 224 CB ALA A 37 12.377 32.242 34.482 1.00 12.21 ATOM 225 N VAL A 38 13.038 29.733 36.504 1.00 14.25 ATOM 226 CA VAL A 38 14.013 29.187 37.402 1.00 16.37 ATOM 227 C VAL A 38 15.418 29.488 36.856 1.00 17.43 ATOM 228 O VAL A 38 15.705 29.349 35.645 1.00 19.25 ATOM 229 CB VAL A 38 13.800 27.680 37.708 1.00 17.56 ATOM 230 CG1 VAL A 38 12.383 27.404 38.131 1.00 19.36 ATOM 231 CG2 VAL A 38 14.110 26.897 36.581 1.00 18.79 ATOM 232 N PRO A 39 16.312 29.872 37.741 1.00 18.50 ATOM 233 CA PRO A 39 17.712 30.014 37.346 1.00 18.15 ATOM 234 C PRO A 39 18.254 28.665 36.790 1.00 17.64 ATOM 235 O PRO A 39 17.791 27.592 37.178 1.00 17.34 ATOM 236 CB PRO A 39 18.412 30.485 38.631 1.00 19.51 ATOM 237 CG PRO A 39 17.402 30.466 39.721 1.00 19.79 ATOM 238 CD PRO A 39 16.062 30.189 39.153 1.00 19.18 TER