HEADER OXIDOREDUCTASE 15-NOV-04 1Y07 TITLE Crystal structure of the superoxide reductase from Treponema pallidum COMPND MOL_ID: 1; COMPND 2 MOLECULE: desulfoferrodoxin (rbo); COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.2; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.55 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 SER B 13 DBREF 1Y07 B 1 128 UNP O83795 O83795_TREP 1 128 SEQRES 1 B 38 GLY ARG GLU LEU SER PHE PHE LEU GLN LYS GLU SER ALA SEQRES 2 B 38 GLY PHE PHE LEU GLY MET ASP ALA PRO ALA GLY SER SER SEQRES 3 B 38 VAL ALA CYS GLY SER GLU VAL LEU ARG ALA VAL PRO ATOM 1 N GLY B 2 -4.421 13.820 31.528 1.00 37.03 ATOM 2 CA GLY B 2 -4.659 14.104 30.092 1.00 36.04 ATOM 3 C GLY B 2 -3.432 14.686 29.437 1.00 34.27 ATOM 4 O GLY B 2 -3.379 14.746 28.198 1.00 36.10 ATOM 5 N ARG B 3 -2.454 15.094 30.270 1.00 30.35 ATOM 6 CA ARG B 3 -1.272 15.894 29.867 1.00 26.97 ATOM 7 C ARG B 3 -1.670 16.998 28.898 1.00 24.70 ATOM 8 O ARG B 3 -1.267 17.014 27.738 1.00 23.97 ATOM 9 CB ARG B 3 -0.187 15.015 29.267 1.00 25.86 ATOM 10 CG ARG B 3 0.635 14.323 30.305 1.00 24.37 ATOM 11 CD ARG B 3 1.422 13.146 29.722 1.00 22.20 ATOM 12 NE ARG B 3 2.476 13.658 28.849 1.00 19.78 ATOM 13 CZ ARG B 3 2.632 13.404 27.539 1.00 18.16 ATOM 14 NH1 ARG B 3 1.809 12.603 26.872 1.00 17.68 ATOM 15 NH2 ARG B 3 3.644 13.983 26.912 1.00 17.56 ATOM 16 N GLU B 4 -2.498 17.903 29.403 1.00 21.41 ATOM 17 CA GLU B 4 -3.191 18.856 28.595 1.00 19.73 ATOM 18 C GLU B 4 -2.286 20.048 28.273 1.00 16.81 ATOM 19 O GLU B 4 -1.743 20.654 29.170 1.00 13.58 ATOM 20 CB GLU B 4 -4.391 19.375 29.393 1.00 20.98 ATOM 21 CG GLU B 4 -5.520 19.929 28.533 1.00 25.66 ATOM 22 CD GLU B 4 -6.564 20.698 29.366 1.00 30.37 ATOM 23 OE1 GLU B 4 -6.854 20.266 30.515 1.00 33.54 ATOM 24 OE2 GLU B 4 -7.082 21.745 28.884 1.00 33.41 ATOM 25 N LEU B 5 -2.179 20.369 26.990 1.00 15.48 ATOM 26 CA LEU B 5 -1.382 21.490 26.500 1.00 14.99 ATOM 27 C LEU B 5 -2.198 22.786 26.418 1.00 14.49 ATOM 28 O LEU B 5 -3.336 22.787 25.950 1.00 15.62 ATOM 29 CB LEU B 5 -0.826 21.164 25.120 1.00 15.58 ATOM 30 CG LEU B 5 0.317 20.177 25.106 1.00 15.83 ATOM 31 CD1 LEU B 5 0.749 19.957 23.715 1.00 15.21 ATOM 32 CD2 LEU B 5 1.488 20.678 25.932 1.00 19.00 ATOM 33 N SER B 6 -1.616 23.877 26.912 1.00 13.14 ATOM 34 CA SER B 6 -2.151 25.193 26.716 1.00 13.42 ATOM 35 C SER B 6 -1.069 26.078 26.132 1.00 12.73 ATOM 36 O SER B 6 0.127 25.789 26.286 1.00 11.17 ATOM 37 CB SER B 6 -2.623 25.804 28.046 1.00 13.98 ATOM 38 OG SER B 6 -1.706 25.520 29.113 1.00 14.86 ATOM 39 N PHE B 7 -1.519 27.152 25.475 1.00 13.15 ATOM 40 CA PHE B 7 -0.662 28.070 24.750 1.00 13.41 ATOM 41 C PHE B 7 -1.011 29.472 25.118 1.00 13.73 ATOM 42 O PHE B 7 -2.183 29.829 25.151 1.00 14.32 ATOM 43 CB PHE B 7 -0.836 27.842 23.246 1.00 14.05 ATOM 44 CG PHE B 7 -0.617 26.407 22.839 1.00 15.34 ATOM 45 CD1 PHE B 7 -1.693 25.514 22.715 1.00 15.37 ATOM 46 CD2 PHE B 7 0.670 25.937 22.604 1.00 13.22 ATOM 47 CE1 PHE B 7 -1.459 24.163 22.351 1.00 15.89 ATOM 48 CE2 PHE B 7 0.889 24.603 22.252 1.00 12.95 ATOM 49 CZ PHE B 7 -0.186 23.734 22.126 1.00 14.35 ATOM 50 N PHE B 8 0.011 30.255 25.393 1.00 13.74 ATOM 51 CA PHE B 8 -0.119 31.649 25.813 1.00 13.61 ATOM 52 C PHE B 8 0.825 32.445 24.897 1.00 15.06 ATOM 53 O PHE B 8 2.029 32.214 24.923 1.00 14.66 ATOM 54 CB PHE B 8 0.310 31.802 27.270 1.00 12.43 ATOM 55 CG PHE B 8 -0.403 30.856 28.206 1.00 12.34 ATOM 56 CD1 PHE B 8 -0.034 29.540 28.290 1.00 14.25 ATOM 57 CD2 PHE B 8 -1.451 31.299 28.990 1.00 12.53 ATOM 58 CE1 PHE B 8 -0.696 28.667 29.140 1.00 15.05 ATOM 59 CE2 PHE B 8 -2.120 30.424 29.827 1.00 12.84 ATOM 60 CZ PHE B 8 -1.723 29.091 29.896 1.00 15.65 ATOM 61 N LEU B 9 0.283 33.395 24.141 1.00 16.22 ATOM 62 CA LEU B 9 1.037 34.048 23.075 1.00 17.77 ATOM 63 C LEU B 9 1.077 35.560 23.247 1.00 18.93 ATOM 64 O LEU B 9 0.041 36.196 23.379 1.00 17.57 ATOM 65 CB LEU B 9 0.430 33.699 21.717 1.00 19.29 ATOM 66 CG LEU B 9 -0.083 32.258 21.493 1.00 22.45 ATOM 67 CD1 LEU B 9 -0.790 32.194 20.186 1.00 24.84 ATOM 68 CD2 LEU B 9 1.009 31.257 21.477 1.00 24.70 ATOM 69 N GLN B 10 2.287 36.131 23.214 1.00 20.29 ATOM 70 CA GLN B 10 2.493 37.600 23.262 1.00 21.84 ATOM 71 C GLN B 10 1.987 38.287 22.008 1.00 21.34 ATOM 72 O GLN B 10 1.864 37.609 20.983 1.00 22.15 ATOM 73 CB GLN B 10 3.976 37.930 23.362 1.00 22.53 ATOM 74 CG GLN B 10 4.502 37.942 24.757 1.00 24.52 ATOM 75 CD GLN B 10 5.737 38.807 24.901 1.00 26.71 ATOM 76 OE1 GLN B 10 6.831 38.359 24.579 1.00 29.75 ATOM 77 NE2 GLN B 10 5.569 40.042 25.401 1.00 26.01 ATOM 78 N ALA B 14 6.253 37.419 18.893 1.00 26.81 ATOM 79 CA ALA B 14 7.123 37.878 19.980 1.00 26.65 ATOM 80 C ALA B 14 7.430 36.784 21.019 1.00 26.12 ATOM 81 O ALA B 14 7.819 37.094 22.146 1.00 28.36 ATOM 82 CB ALA B 14 6.520 39.117 20.667 1.00 26.52 ATOM 83 N GLY B 15 7.263 35.509 20.673 1.00 24.73 ATOM 84 CA GLY B 15 7.454 34.457 21.654 1.00 23.17 ATOM 85 C GLY B 15 6.156 34.078 22.365 1.00 21.80 ATOM 86 O GLY B 15 5.063 34.626 22.119 1.00 22.29 ATOM 87 N PHE B 16 6.264 33.105 23.260 1.00 19.50 ATOM 88 CA PHE B 16 5.089 32.503 23.820 1.00 17.42 ATOM 89 C PHE B 16 5.457 31.526 24.914 1.00 13.92 ATOM 90 O PHE B 16 6.633 31.261 25.188 1.00 12.26 ATOM 91 CB PHE B 16 4.291 31.756 22.724 1.00 18.41 ATOM 92 CG PHE B 16 5.129 30.846 21.889 1.00 21.26 ATOM 93 CD1 PHE B 16 5.038 29.500 22.013 1.00 23.83 ATOM 94 CD2 PHE B 16 6.008 31.367 20.926 1.00 23.01 ATOM 95 CE1 PHE B 16 5.801 28.675 21.207 1.00 25.66 ATOM 96 CE2 PHE B 16 6.784 30.528 20.145 1.00 24.55 ATOM 97 CZ PHE B 16 6.676 29.190 20.295 1.00 24.36 ATOM 98 N PHE B 17 4.420 30.992 25.533 1.00 13.04 ATOM 99 CA PHE B 17 4.555 29.989 26.560 1.00 11.84 ATOM 100 C PHE B 17 3.709 28.792 26.264 1.00 12.29 ATOM 101 O PHE B 17 2.606 28.905 25.749 1.00 13.37 ATOM 102 CB PHE B 17 4.160 30.549 27.929 1.00 11.55 ATOM 103 CG PHE B 17 4.876 31.843 28.267 1.00 9.20 ATOM 104 CD1 PHE B 17 4.504 33.044 27.629 1.00 11.06 ATOM 105 CD2 PHE B 17 5.896 31.861 29.212 1.00 8.40 ATOM 106 CE1 PHE B 17 5.137 34.219 27.952 1.00 7.83 ATOM 107 CE2 PHE B 17 6.538 33.054 29.536 1.00 9.64 ATOM 108 CZ PHE B 17 6.185 34.202 28.881 1.00 8.72 ATOM 109 N LEU B 18 4.258 27.640 26.602 1.00 11.19 ATOM 110 CA LEU B 18 3.562 26.348 26.512 1.00 11.87 ATOM 111 C LEU B 18 3.333 25.868 27.938 1.00 11.58 ATOM 112 O LEU B 18 4.268 25.756 28.705 1.00 13.36 ATOM 113 CB LEU B 18 4.464 25.357 25.711 1.00 13.48 ATOM 114 CG LEU B 18 4.139 23.889 25.435 1.00 18.40 ATOM 115 CD1 LEU B 18 4.879 23.541 24.170 1.00 18.36 ATOM 116 CD2 LEU B 18 4.585 22.920 26.540 1.00 19.66 ATOM 117 N GLY B 19 2.082 25.641 28.312 1.00 11.58 ATOM 118 CA GLY B 19 1.742 25.071 29.597 1.00 10.86 ATOM 119 C GLY B 19 1.359 23.601 29.527 1.00 12.07 ATOM 120 O GLY B 19 0.688 23.151 28.600 1.00 13.20 ATOM 121 N MET B 20 1.876 22.830 30.473 1.00 13.88 ATOM 122 CA MET B 20 1.510 21.422 30.596 1.00 14.51 ATOM 123 C MET B 20 0.710 21.253 31.899 1.00 14.19 ATOM 124 O MET B 20 1.222 21.533 32.998 1.00 13.33 ATOM 125 CB MET B 20 2.734 20.504 30.534 1.00 15.89 ATOM 126 CG MET B 20 2.350 18.997 30.682 1.00 19.69 ATOM 127 SD MET B 20 1.235 18.249 29.380 1.00 22.93 ATOM 128 CE MET B 20 2.377 18.036 27.965 1.00 26.50 ATOM 129 N ASP B 21 -0.558 20.846 31.750 1.00 14.27 ATOM 130 CA ASP B 21 -1.497 20.706 32.867 1.00 15.71 ATOM 131 C ASP B 21 -1.663 21.981 33.655 1.00 16.29 ATOM 132 O ASP B 21 -1.713 21.992 34.884 1.00 16.08 ATOM 133 CB ASP B 21 -1.120 19.481 33.755 1.00 16.69 ATOM 134 CG ASP B 21 -1.355 18.203 33.044 1.00 18.46 ATOM 135 OD1 ASP B 21 -2.347 18.094 32.301 1.00 17.98 ATOM 136 OD2 ASP B 21 -0.561 17.250 33.119 1.00 24.95 ATOM 137 N ALA B 22 -1.683 23.089 32.931 1.00 15.44 ATOM 138 CA ALA B 22 -2.078 24.368 33.506 1.00 17.15 ATOM 139 C ALA B 22 -3.507 24.221 34.063 1.00 17.85 ATOM 140 O ALA B 22 -4.446 23.840 33.359 1.00 19.41 ATOM 141 CB ALA B 22 -2.063 25.433 32.447 1.00 17.34 ATOM 142 N PRO B 23 -3.683 24.616 35.294 1.00 18.13 ATOM 143 CA PRO B 23 -5.024 24.778 35.861 1.00 19.41 ATOM 144 C PRO B 23 -5.864 25.791 35.083 1.00 19.92 ATOM 145 O PRO B 23 -5.266 26.768 34.622 1.00 19.74 ATOM 146 CB PRO B 23 -4.726 25.309 37.243 1.00 19.57 ATOM 147 CG PRO B 23 -3.372 24.865 37.519 1.00 19.15 ATOM 148 CD PRO B 23 -2.620 24.974 36.237 1.00 16.98 ATOM 149 N ALA B 24 -7.175 25.535 34.946 1.00 20.31 ATOM 150 CA ALA B 24 -8.169 26.376 34.279 1.00 20.02 ATOM 151 C ALA B 24 -8.018 27.802 34.719 1.00 20.04 ATOM 152 O ALA B 24 -7.825 28.063 35.910 1.00 20.01 ATOM 153 CB ALA B 24 -9.618 25.890 34.614 1.00 20.54 ATOM 154 N GLY B 25 -8.092 28.718 33.756 1.00 19.42 ATOM 155 CA GLY B 25 -7.939 30.144 34.083 1.00 19.19 ATOM 156 C GLY B 25 -6.503 30.636 34.386 1.00 19.20 ATOM 157 O GLY B 25 -6.289 31.803 34.759 1.00 18.61 ATOM 158 N SER B 26 -5.490 29.788 34.217 1.00 18.19 ATOM 159 CA SER B 26 -4.105 30.229 34.393 1.00 17.18 ATOM 160 C SER B 26 -3.827 31.380 33.427 1.00 16.96 ATOM 161 O SER B 26 -4.463 31.459 32.363 1.00 17.57 ATOM 162 CB SER B 26 -3.137 29.069 34.065 1.00 18.36 ATOM 163 OG SER B 26 -3.187 28.060 35.057 1.00 16.13 ATOM 164 N SER B 27 -2.849 32.203 33.782 1.00 14.72 ATOM 165 CA SER B 27 -2.393 33.291 32.943 1.00 15.57 ATOM 166 C SER B 27 -0.900 33.635 33.156 1.00 14.68 ATOM 167 O SER B 27 -0.251 33.159 34.098 1.00 15.07 ATOM 168 CB SER B 27 -3.276 34.517 33.226 1.00 15.37 ATOM 169 OG SER B 27 -3.094 34.927 34.550 1.00 16.47 ATOM 170 N VAL B 28 -0.360 34.387 32.210 1.00 14.19 ATOM 171 CA VAL B 28 1.032 34.814 32.217 1.00 15.20 ATOM 172 C VAL B 28 1.071 36.303 32.088 1.00 16.69 ATOM 173 O VAL B 28 0.461 36.891 31.163 1.00 15.90 ATOM 174 CB VAL B 28 1.811 34.247 31.021 1.00 14.92 ATOM 175 CG1 VAL B 28 3.286 34.529 31.173 1.00 14.91 ATOM 176 CG2 VAL B 28 1.543 32.767 30.881 1.00 15.76 ATOM 177 N ALA B 29 1.766 36.936 33.021 1.00 17.85 ATOM 178 CA ALA B 29 1.948 38.378 32.989 1.00 19.77 ATOM 179 C ALA B 29 3.297 38.595 32.327 1.00 21.44 ATOM 180 O ALA B 29 4.291 38.055 32.768 1.00 20.21 ATOM 181 CB ALA B 29 1.960 38.915 34.378 1.00 18.96 ATOM 182 N CYS B 30 3.338 39.344 31.249 1.00 24.63 ATOM 183 CA CYS B 30 4.570 39.387 30.470 1.00 27.84 ATOM 184 C CYS B 30 4.613 40.725 29.700 1.00 29.22 ATOM 185 O CYS B 30 3.966 40.901 28.668 1.00 30.57 ATOM 186 CB CYS B 30 4.662 38.043 29.664 1.00 27.64 ATOM 187 SG CYS B 30 4.893 38.019 27.905 1.00 33.61 ATOM 188 N GLY B 31 5.343 41.687 30.279 1.00 30.78 ATOM 189 CA GLY B 31 5.220 43.109 29.947 1.00 31.62 ATOM 190 C GLY B 31 4.026 43.586 30.766 1.00 32.41 ATOM 191 O GLY B 31 3.801 43.068 31.877 1.00 33.49 ATOM 192 N SER B 32 3.236 44.530 30.248 1.00 32.06 ATOM 193 CA SER B 32 1.820 44.497 30.619 1.00 31.94 ATOM 194 C SER B 32 0.958 44.060 29.445 1.00 30.53 ATOM 195 O SER B 32 0.195 44.833 28.846 1.00 31.10 ATOM 196 CB SER B 32 1.288 45.766 31.269 1.00 32.36 ATOM 197 OG SER B 32 0.043 45.426 31.880 1.00 34.52 ATOM 198 N GLU B 33 1.176 42.811 29.078 1.00 28.45 ATOM 199 CA GLU B 33 0.102 41.975 28.603 1.00 26.50 ATOM 200 C GLU B 33 -0.196 41.099 29.826 1.00 23.37 ATOM 201 O GLU B 33 0.692 40.844 30.630 1.00 21.93 ATOM 202 CB GLU B 33 0.556 41.102 27.426 1.00 27.48 ATOM 203 CG GLU B 33 0.872 41.821 26.109 1.00 30.40 ATOM 204 CD GLU B 33 1.620 40.904 25.131 1.00 33.26 ATOM 205 OE1 GLU B 33 2.808 40.617 25.404 1.00 34.80 ATOM 206 OE2 GLU B 33 1.033 40.464 24.105 1.00 34.93 ATOM 207 N VAL B 34 -1.441 40.695 29.984 1.00 20.49 ATOM 208 CA VAL B 34 -1.767 39.448 30.700 1.00 18.80 ATOM 209 C VAL B 34 -2.216 38.482 29.614 1.00 17.30 ATOM 210 O VAL B 34 -3.163 38.761 28.864 1.00 17.12 ATOM 211 CB VAL B 34 -2.856 39.674 31.787 1.00 19.16 ATOM 212 CG1 VAL B 34 -3.392 38.375 32.323 1.00 18.67 ATOM 213 CG2 VAL B 34 -2.279 40.490 32.927 1.00 21.24 ATOM 214 N LEU B 35 -1.548 37.336 29.499 1.00 16.06 ATOM 215 CA LEU B 35 -1.835 36.397 28.428 1.00 14.79 ATOM 216 C LEU B 35 -2.716 35.309 29.045 1.00 15.39 ATOM 217 O LEU B 35 -2.433 34.875 30.139 1.00 15.77 ATOM 218 CB LEU B 35 -0.573 35.746 27.906 1.00 14.41 ATOM 219 CG LEU B 35 0.577 36.674 27.503 1.00 12.64 ATOM 220 CD1 LEU B 35 1.741 35.793 27.024 1.00 15.01 ATOM 221 CD2 LEU B 35 0.181 37.687 26.477 1.00 12.38 ATOM 222 N ARG B 36 -3.793 34.959 28.359 1.00 16.01 ATOM 223 CA ARG B 36 -4.655 33.858 28.763 1.00 16.79 ATOM 224 C ARG B 36 -4.492 32.709 27.780 1.00 15.52 ATOM 225 O ARG B 36 -4.110 32.901 26.652 1.00 16.09 ATOM 226 CB ARG B 36 -6.138 34.274 28.772 1.00 18.40 ATOM 227 CG ARG B 36 -6.488 35.508 29.604 1.00 21.61 ATOM 228 CD ARG B 36 -6.462 35.272 31.090 1.00 26.93 ATOM 229 NE ARG B 36 -6.635 36.515 31.848 1.00 31.10 ATOM 230 CZ ARG B 36 -6.743 36.562 33.173 1.00 34.30 ATOM 231 NH1 ARG B 36 -6.886 37.732 33.788 1.00 36.70 ATOM 232 NH2 ARG B 36 -6.724 35.442 33.884 1.00 36.43 ATOM 233 N ALA B 37 -4.872 31.497 28.189 1.00 15.05 ATOM 234 CA ALA B 37 -4.784 30.359 27.277 1.00 14.38 ATOM 235 C ALA B 37 -5.649 30.645 26.065 1.00 16.99 ATOM 236 O ALA B 37 -6.862 30.978 26.185 1.00 15.27 ATOM 237 CB ALA B 37 -5.274 29.108 27.979 1.00 13.44 ATOM 238 N VAL B 38 -5.034 30.580 24.887 1.00 18.93 ATOM 239 CA VAL B 38 -5.793 30.764 23.647 1.00 21.45 ATOM 240 C VAL B 38 -6.723 29.552 23.408 1.00 22.64 ATOM 241 O VAL B 38 -6.431 28.440 23.812 1.00 22.81 ATOM 242 CB VAL B 38 -4.856 31.007 22.428 1.00 21.55 ATOM 243 CG1 VAL B 38 -3.949 32.209 22.651 1.00 22.21 ATOM 244 CG2 VAL B 38 -4.044 29.799 22.155 1.00 22.27 ATOM 245 N PRO B 39 -7.898 29.746 22.826 1.00 24.59 ATOM 246 CA PRO B 39 -8.719 28.592 22.480 1.00 25.27 ATOM 247 C PRO B 39 -8.179 27.868 21.246 1.00 26.28 ATOM 248 O PRO B 39 -7.368 28.422 20.487 1.00 28.24 ATOM 249 CB PRO B 39 -10.059 29.228 22.193 1.00 25.20 ATOM 250 CG PRO B 39 -9.725 30.542 21.673 1.00 24.88 ATOM 251 CD PRO B 39 -8.552 31.018 22.473 1.00 25.02 TER