HEADER TRANSFERASE/TRANSCRIPTION/DNA-RNA HYBRID19-NOV-04 1Y1Y TITLE RNA Polymerase II-TFIIS-DNA/RNA complex COMPND MOL_ID: 3; COMPND 2 MOLECULE: DNA-directed RNA polymerase II largest subunit; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.6; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 4.00 ANGSTORMS DBREF 1Y1Y A 1 1733 UNP P04050 RPB1_YEAST 1 1733 SEQRES 1 A 198 PRO GLY GLU MET VAL GLY VAL LEU ALA ALA GLN SER ILE SEQRES 2 A 198 GLY GLU PRO ALA THR GLN MET THR LEU ASN THR PHE HIS SEQRES 3 A 198 PHE ALA GLY VAL ALA SER LYS LYS VAL THR SER GLY VAL SEQRES 4 A 198 PRO ARG LEU LYS GLU PRO GLU TRP VAL LEU GLU THR ASP SEQRES 5 A 198 GLY VAL ASN LEU SER GLU VAL MET THR VAL PRO GLY ILE SEQRES 6 A 198 ASP PRO THR ARG ILE TYR THR ASN SER PHE ILE ASP ILE SEQRES 7 A 198 MET GLU VAL LEU GLY ILE GLU ALA GLY ARG ALA ALA LEU SEQRES 8 A 198 TYR LYS GLU VAL TYR ASN VAL ILE ALA SER ASP GLY SER SEQRES 9 A 198 TYR VAL ASN TYR ARG HIS MET ALA LEU LEU VAL ASP VAL SEQRES 10 A 198 MET THR THR GLN GLY GLY LEU THR SER VAL THR ARG HIS SEQRES 11 A 198 GLY PHE ASN ARG SER ASN THR GLY ALA LEU MET ARG CYS SEQRES 12 A 198 SER PHE GLU GLU THR VAL GLU ILE LEU PHE GLU ALA GLY SEQRES 13 A 198 ALA SER ALA GLU LEU ASP ASP CYS ARG GLY VAL SER GLU SEQRES 14 A 198 ASN VAL ILE LEU GLY GLN MET ALA PRO ILE GLY THR GLY SEQRES 15 A 198 ALA PHE ASP VAL MET ILE ASP GLU GLU SER LEU VAL LYS SEQRES 16 A 198 TYR MET PRO ATOM 1 CA PRO A1060 131.270 52.138 -16.862 1.00 34.37 ATOM 2 CA GLY A1061 128.002 50.301 -16.656 1.00 35.30 ATOM 3 CA GLU A1062 126.237 51.463 -13.493 1.00 40.76 ATOM 4 CA MET A1063 122.647 52.219 -14.409 1.00 32.53 ATOM 5 CA VAL A1064 122.746 55.533 -12.655 1.00 26.19 ATOM 6 CA GLY A1065 119.573 56.812 -14.184 1.00 24.72 ATOM 7 CA VAL A1066 117.448 54.353 -12.328 1.00 21.89 ATOM 8 CA LEU A1067 119.666 54.611 -9.309 1.00 34.25 ATOM 9 CA ALA A1068 119.360 58.359 -9.240 1.00 33.88 ATOM 10 CA ALA A1069 115.589 58.058 -9.639 1.00 32.16 ATOM 11 CA GLN A1070 115.129 55.542 -6.849 1.00 38.41 ATOM 12 CA SER A1071 117.162 57.656 -4.403 1.00 34.35 ATOM 13 CA ILE A1072 114.852 60.661 -4.738 1.00 31.16 ATOM 14 CA GLY A1073 111.546 58.749 -4.706 1.00 38.86 ATOM 15 CA GLU A1074 112.655 56.563 -1.826 1.00 49.39 ATOM 16 CA PRO A1075 112.705 59.588 0.515 1.00 51.17 ATOM 17 CA ALA A1076 109.943 61.219 -1.465 1.00 58.03 ATOM 18 CA THR A1077 107.668 58.524 -0.199 1.00 72.10 ATOM 19 CA GLN A1078 108.527 58.947 3.470 1.00 90.73 ATOM 20 CA MET A1079 107.913 62.706 3.109 1.00 88.21 ATOM 21 CA THR A1080 105.163 64.208 5.238 1.00106.62 ATOM 22 CA LEU A1081 102.127 65.732 3.529 1.00121.45 ATOM 23 CA ASN A1082 100.376 69.055 3.611 1.00135.01 ATOM 24 CA THR A1083 101.791 70.089 7.009 1.00138.71 ATOM 25 CA PHE A1084 102.570 73.789 6.937 1.00141.73 ATOM 26 CA HIS A1085 104.146 74.621 10.296 1.00134.38 ATOM 27 CA PHE A1086 103.563 78.292 9.542 1.00122.02 ATOM 28 CA ALA A1087 99.772 77.902 9.713 1.00113.51 ATOM 29 CA GLY A1088 98.967 79.773 12.930 1.00107.44 ATOM 30 CA VAL A1089 100.659 82.785 11.286 1.00 95.81 ATOM 31 CA ALA A1090 98.616 83.680 8.194 1.00100.13 ATOM 32 CA SER A1091 100.210 85.762 5.456 1.00109.25 ATOM 33 CA LYS A1092 103.639 84.262 6.092 1.00113.46 ATOM 34 CA LYS A1093 102.413 81.045 4.482 1.00105.23 ATOM 35 CA VAL A1094 104.707 79.286 1.992 1.00 94.23 ATOM 36 CA THR A1095 104.389 75.982 0.051 1.00 87.46 ATOM 37 CA SER A1096 106.532 73.214 1.450 1.00 85.61 ATOM 38 CA GLY A1097 106.506 69.448 1.312 1.00 73.86 ATOM 39 CA VAL A1098 105.215 66.836 -1.065 1.00 61.25 ATOM 40 CA PRO A1099 102.518 68.999 -2.594 1.00 58.74 ATOM 41 CA ARG A1100 105.487 71.219 -3.470 1.00 51.55 ATOM 42 CA LEU A1101 107.598 68.536 -5.033 1.00 35.73 ATOM 43 CA LYS A1102 104.502 67.655 -7.002 1.00 42.16 ATOM 44 CA GLU A1301 127.766 90.350 8.919 1.00 91.20 ATOM 45 CA PRO A1302 123.903 90.430 8.910 1.00 82.06 ATOM 46 CA GLU A1303 121.991 92.106 6.089 1.00 74.58 ATOM 47 CA TRP A1304 118.388 93.196 5.562 1.00 71.27 ATOM 48 CA VAL A1305 116.327 91.728 2.820 1.00 59.26 ATOM 49 CA LEU A1306 112.991 91.920 1.161 1.00 57.04 ATOM 50 CA GLU A1307 110.872 88.846 0.425 1.00 68.23 ATOM 51 CA THR A1308 108.177 89.369 -2.185 1.00 67.74 ATOM 52 CA ASP A1309 104.773 87.576 -2.352 1.00 67.19 ATOM 53 CA GLY A1310 103.960 87.807 -6.027 1.00 62.41 ATOM 54 CA VAL A1311 106.493 87.629 -8.833 1.00 69.30 ATOM 55 CA ASN A1312 107.626 89.664 -11.822 1.00 83.00 ATOM 56 CA LEU A1313 111.401 89.348 -11.980 1.00 77.69 ATOM 57 CA SER A1314 111.901 90.968 -15.389 1.00 77.98 ATOM 58 CA GLU A1315 111.231 94.260 -13.647 1.00 70.58 ATOM 59 CA VAL A1316 111.930 94.011 -9.943 1.00 53.97 ATOM 60 CA MET A1317 115.386 93.330 -11.224 1.00 65.90 ATOM 61 CA THR A1318 115.800 96.612 -13.097 1.00 76.78 ATOM 62 CA VAL A1319 115.142 98.542 -9.889 1.00 71.92 ATOM 63 CA PRO A1320 117.713 100.725 -8.141 1.00 75.57 ATOM 64 CA GLY A1321 118.879 99.677 -4.685 1.00 78.20 ATOM 65 CA ILE A1322 118.782 95.928 -5.303 1.00 74.11 ATOM 66 CA ASP A1323 121.716 93.695 -6.245 1.00 71.12 ATOM 67 CA PRO A1324 120.358 92.217 -9.491 1.00 68.46 ATOM 68 CA THR A1325 123.101 89.664 -9.015 1.00 64.05 ATOM 69 CA ARG A1326 121.754 88.005 -5.887 1.00 60.77 ATOM 70 CA ILE A1327 118.069 88.276 -6.727 1.00 54.54 ATOM 71 CA TYR A1328 116.171 84.954 -6.510 1.00 58.70 ATOM 72 CA THR A1329 112.577 83.728 -7.008 1.00 63.63 ATOM 73 CA ASN A1330 111.727 80.414 -5.540 1.00 63.78 ATOM 74 CA SER A1331 109.853 80.092 -9.047 1.00 57.03 ATOM 75 CA PHE A1332 112.684 78.851 -11.115 1.00 56.42 ATOM 76 CA ILE A1333 110.207 78.805 -13.956 1.00 60.24 ATOM 77 CA ASP A1334 110.862 82.570 -14.104 1.00 59.82 ATOM 78 CA ILE A1335 114.493 82.668 -12.942 1.00 50.10 ATOM 79 CA MET A1336 114.906 80.760 -16.157 1.00 54.72 ATOM 80 CA GLU A1337 112.959 83.035 -18.484 1.00 66.89 ATOM 81 CA VAL A1338 114.911 86.013 -17.158 1.00 59.33 ATOM 82 CA LEU A1339 118.375 84.989 -16.010 1.00 44.19 ATOM 83 CA GLY A1340 118.772 82.158 -18.501 1.00 50.27 ATOM 84 CA ILE A1341 118.560 78.331 -18.535 1.00 49.56 ATOM 85 CA GLU A1342 121.901 77.497 -16.946 1.00 56.60 ATOM 86 CA ALA A1343 120.830 79.568 -13.978 1.00 48.47 ATOM 87 CA GLY A1344 117.413 78.064 -14.309 1.00 38.28 ATOM 88 CA ARG A1345 118.980 74.721 -13.680 1.00 39.62 ATOM 89 CA ALA A1346 120.815 76.181 -10.733 1.00 39.67 ATOM 90 CA ALA A1347 117.489 77.267 -9.291 1.00 44.83 ATOM 91 CA LEU A1348 115.758 74.057 -10.199 1.00 41.53 ATOM 92 CA TYR A1349 118.399 71.969 -8.503 1.00 44.59 ATOM 93 CA LYS A1350 118.374 74.455 -5.670 1.00 46.87 ATOM 94 CA GLU A1351 114.668 74.148 -5.198 1.00 48.71 ATOM 95 CA VAL A1352 114.680 70.333 -5.348 1.00 35.44 ATOM 96 CA TYR A1353 117.613 70.026 -2.931 1.00 46.16 ATOM 97 CA ASN A1354 115.537 71.815 -0.368 1.00 58.43 ATOM 98 CA VAL A1355 112.313 69.824 -0.620 1.00 61.16 ATOM 99 CA ILE A1356 114.358 66.757 0.218 1.00 55.02 ATOM 100 CA ALA A1357 116.492 68.491 2.894 1.00 68.37 ATOM 101 CA SER A1358 113.656 69.751 5.060 1.00 74.64 ATOM 102 CA ASP A1359 113.233 66.095 6.065 1.00 82.69 ATOM 103 CA GLY A1360 116.902 65.943 6.960 1.00 79.15 ATOM 104 CA SER A1361 117.242 63.447 4.164 1.00 65.73 ATOM 105 CA TYR A1362 120.606 63.579 2.429 1.00 58.64 ATOM 106 CA VAL A1363 120.924 62.541 -1.195 1.00 45.13 ATOM 107 CA ASN A1364 124.317 62.701 -2.963 1.00 48.81 ATOM 108 CA TYR A1365 124.188 65.650 -5.379 1.00 46.55 ATOM 109 CA ARG A1366 124.767 63.464 -8.477 1.00 39.33 ATOM 110 CA HIS A1367 121.264 62.029 -8.311 1.00 35.02 ATOM 111 CA MET A1368 119.177 65.206 -8.006 1.00 35.82 ATOM 112 CA ALA A1369 121.894 66.606 -10.214 1.00 32.79 ATOM 113 CA LEU A1370 121.216 63.942 -12.826 1.00 27.12 ATOM 114 CA LEU A1371 117.417 64.451 -12.596 1.00 27.21 ATOM 115 CA VAL A1372 117.747 68.204 -12.893 1.00 33.75 ATOM 116 CA ASP A1373 120.100 67.862 -15.836 1.00 42.79 ATOM 117 CA VAL A1374 117.562 65.628 -17.582 1.00 35.96 ATOM 118 CA MET A1375 114.718 68.091 -17.164 1.00 44.13 ATOM 119 CA THR A1376 116.900 70.878 -18.412 1.00 48.84 ATOM 120 CA THR A1377 119.200 70.017 -21.347 1.00 54.69 ATOM 121 CA GLN A1378 116.624 69.780 -24.116 1.00 70.52 ATOM 122 CA GLY A1379 115.987 73.516 -24.073 1.00 70.58 ATOM 123 CA GLY A1380 114.128 74.793 -21.063 1.00 71.51 ATOM 124 CA LEU A1381 112.021 72.987 -18.531 1.00 64.96 ATOM 125 CA THR A1382 110.989 69.503 -19.635 1.00 61.94 ATOM 126 CA SER A1383 108.569 68.108 -17.051 1.00 57.75 ATOM 127 CA VAL A1384 108.694 64.664 -15.515 1.00 49.85 ATOM 128 CA THR A1385 105.258 63.755 -16.846 1.00 64.25 ATOM 129 CA ARG A1386 103.211 62.373 -19.735 1.00 82.55 ATOM 130 CA HIS A1387 103.159 65.956 -21.022 1.00 95.79 ATOM 131 CA GLY A1388 106.947 66.016 -21.183 1.00 87.82 ATOM 132 CA PHE A1389 109.898 63.649 -21.113 1.00 78.38 ATOM 133 CA ASN A1390 107.615 60.928 -22.403 1.00 77.97 ATOM 134 CA ARG A1391 107.310 62.727 -25.762 1.00 83.86 ATOM 135 CA SER A1392 111.025 63.058 -26.493 1.00 76.53 ATOM 136 CA ASN A1393 112.971 61.625 -29.395 1.00 73.14 ATOM 137 CA THR A1394 112.820 58.283 -27.558 1.00 56.32 ATOM 138 CA GLY A1395 111.587 55.183 -29.416 1.00 49.16 ATOM 139 CA ALA A1396 108.013 53.895 -28.999 1.00 37.95 ATOM 140 CA LEU A1397 107.768 50.931 -26.687 1.00 39.95 ATOM 141 CA MET A1398 109.674 52.869 -24.046 1.00 45.05 ATOM 142 CA ARG A1399 107.077 55.631 -24.000 1.00 41.26 ATOM 143 CA CYS A1400 104.614 52.898 -24.777 1.00 35.61 ATOM 144 CA SER A1401 105.331 51.773 -21.235 1.00 33.91 ATOM 145 CA PHE A1402 103.973 54.929 -19.645 1.00 45.55 ATOM 146 CA GLU A1403 100.524 56.450 -19.274 1.00 57.62 ATOM 147 CA GLU A1404 99.681 56.771 -23.001 1.00 51.37 ATOM 148 CA THR A1405 100.265 53.226 -24.306 1.00 47.03 ATOM 149 CA VAL A1406 97.786 52.509 -27.072 1.00 47.75 ATOM 150 CA GLU A1407 97.514 56.142 -28.111 1.00 60.33 ATOM 151 CA ILE A1408 101.276 56.238 -28.428 1.00 50.61 ATOM 152 CA LEU A1409 101.531 53.104 -30.538 1.00 47.60 ATOM 153 CA PHE A1410 98.887 54.268 -32.945 1.00 59.19 ATOM 154 CA GLU A1411 100.628 57.502 -33.827 1.00 72.29 ATOM 155 CA ALA A1412 103.685 55.330 -34.212 1.00 55.48 ATOM 156 CA GLY A1413 102.683 52.979 -36.989 1.00 48.65 ATOM 157 CA ALA A1414 101.019 56.088 -38.269 1.00 52.54 ATOM 158 CA SER A1415 104.277 57.999 -38.814 1.00 57.76 ATOM 159 CA ALA A1416 106.336 54.908 -39.591 1.00 57.78 ATOM 160 CA GLU A1417 108.370 55.097 -36.376 1.00 64.02 ATOM 161 CA LEU A1418 111.556 53.055 -36.143 1.00 63.44 ATOM 162 CA ASP A1419 112.857 51.710 -32.833 1.00 64.03 ATOM 163 CA ASP A1420 116.530 51.419 -31.821 1.00 57.30 ATOM 164 CA CYS A1421 115.671 48.884 -29.215 1.00 48.57 ATOM 165 CA ARG A1422 118.454 50.369 -27.139 1.00 56.16 ATOM 166 CA GLY A1423 116.191 51.291 -24.304 1.00 52.43 ATOM 167 CA VAL A1424 116.018 48.980 -21.342 1.00 42.92 ATOM 168 CA SER A1425 112.217 48.749 -21.730 1.00 47.17 ATOM 169 CA GLU A1426 112.632 48.041 -25.453 1.00 47.05 ATOM 170 CA ASN A1427 114.540 44.911 -24.557 1.00 40.33 ATOM 171 CA VAL A1428 112.536 43.825 -21.525 1.00 34.41 ATOM 172 CA ILE A1429 109.666 43.819 -24.025 1.00 29.38 ATOM 173 CA LEU A1430 111.464 41.594 -26.425 1.00 26.73 ATOM 174 CA GLY A1431 112.983 39.494 -23.693 1.00 33.14 ATOM 175 CA GLN A1432 116.522 40.177 -24.907 1.00 39.80 ATOM 176 CA MET A1433 119.542 41.085 -22.804 1.00 35.43 ATOM 177 CA ALA A1434 119.581 44.817 -22.372 1.00 29.53 ATOM 178 CA PRO A1435 122.734 47.018 -22.609 1.00 34.03 ATOM 179 CA ILE A1436 123.114 47.459 -18.903 1.00 34.62 ATOM 180 CA GLY A1437 126.030 46.891 -16.634 1.00 31.17 ATOM 181 CA THR A1438 126.525 43.213 -17.347 1.00 23.56 ATOM 182 CA GLY A1439 125.077 44.013 -20.759 1.00 34.67 ATOM 183 CA ALA A1440 127.070 47.125 -21.558 1.00 39.67 ATOM 184 CA PHE A1441 129.369 44.983 -23.696 1.00 41.95 ATOM 185 CA ASP A1442 130.018 41.820 -25.688 1.00 49.36 ATOM 186 CA VAL A1443 132.434 38.998 -24.832 1.00 50.16 ATOM 187 CA MET A1444 134.592 36.954 -27.108 1.00 55.05 ATOM 188 CA ILE A1445 136.915 33.974 -27.578 1.00 68.89 ATOM 189 CA ASP A1446 140.331 34.848 -28.944 1.00 90.38 ATOM 190 CA GLU A1447 141.195 31.624 -30.675 1.00101.68 ATOM 191 CA GLU A1448 144.744 32.964 -30.860 1.00109.26 ATOM 192 CA SER A1449 145.071 33.359 -27.086 1.00 98.23 ATOM 193 CA LEU A1450 143.179 30.080 -26.807 1.00 95.27 ATOM 194 CA VAL A1451 146.191 28.286 -28.274 1.00105.14 ATOM 195 CA LYS A1452 149.005 29.660 -26.126 1.00113.13 ATOM 196 CA TYR A1453 146.899 28.293 -23.267 1.00123.44 ATOM 197 CA MET A1454 148.048 24.670 -23.373 1.00145.29 ATOM 198 CA PRO A1455 151.225 22.986 -21.998 1.00158.05 TER