HEADER TRANSFERASE/TRANSCRIPTION/DNA-RNA HYBRID19-NOV-04 1Y1Y TITLE RNA Polymerase II-TFIIS-DNA/RNA complex COMPND MOL_ID: 3; COMPND 2 MOLECULE: DNA-directed RNA polymerase II largest subunit; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.6; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 4.00 ANGSTORMS DBREF 1Y1Y A 1 1733 UNP P04050 RPB1_YEAST 1 1733 SEQRES 1 A 209 SER THR GLY ILE GLY ASP THR ILE ALA ASP GLY PRO THR SEQRES 2 A 209 MET ARG GLU ILE THR GLU THR ILE ALA GLU ALA LYS LYS SEQRES 3 A 209 LYS VAL LEU ASP VAL THR LYS GLU ALA GLN ALA ASN LEU SEQRES 4 A 209 LEU THR ALA LYS HIS GLY MET THR LEU ARG GLU SER PHE SEQRES 5 A 209 GLU ASP ASN VAL VAL ARG PHE LEU ASN GLU ALA ARG ASP SEQRES 6 A 209 LYS ALA GLY ARG LEU ALA GLU VAL ASN LEU LYS ASP LEU SEQRES 7 A 209 ASN ASN VAL LYS GLN MET VAL MET ALA GLY SER LYS GLY SEQRES 8 A 209 SER PHE ILE ASN ILE ALA GLN MET SER ALA CYS VAL GLY SEQRES 9 A 209 GLN GLN SER VAL GLU GLY LYS ARG ILE ALA PHE GLY PHE SEQRES 10 A 209 VAL ASP ARG THR LEU PRO HIS PHE SER LYS ASP ASP TYR SEQRES 11 A 209 SER PRO GLU SER LYS GLY PHE VAL GLU ASN SER TYR LEU SEQRES 12 A 209 ARG GLY LEU THR PRO GLN GLU PHE PHE PHE HIS ALA MET SEQRES 13 A 209 GLY GLY ARG GLU GLY LEU ILE ASP THR ALA VAL LYS THR SEQRES 14 A 209 ALA GLU THR GLY TYR ILE GLN ARG ARG LEU VAL LYS ALA SEQRES 15 A 209 LEU GLU ASP ILE MET VAL HIS TYR ASP ASN THR THR ARG SEQRES 16 A 209 ASN SER LEU GLY ASN VAL ILE GLN PHE ILE TYR GLY GLU SEQRES 17 A 209 ASP ATOM 1 CA SER A 663 114.325 43.823 30.813 1.00 56.49 ATOM 2 CA THR A 664 111.820 46.772 30.885 1.00 60.57 ATOM 3 CA GLY A 665 108.907 47.685 33.154 1.00 61.97 ATOM 4 CA ILE A 666 106.670 50.359 34.696 1.00 55.20 ATOM 5 CA GLY A 667 109.353 50.926 37.321 1.00 58.38 ATOM 6 CA ASP A 668 111.332 52.502 34.515 1.00 63.57 ATOM 7 CA THR A 669 108.597 55.133 34.009 1.00 70.89 ATOM 8 CA ILE A 670 108.193 56.357 37.589 1.00 86.56 ATOM 9 CA ALA A 671 110.570 59.051 38.760 1.00 97.94 ATOM 10 CA ASP A 672 111.693 60.389 42.141 1.00106.57 ATOM 11 CA GLY A 673 108.685 61.608 44.176 1.00105.53 ATOM 12 CA PRO A 674 109.959 65.204 44.438 1.00100.94 ATOM 13 CA THR A 675 110.789 65.302 40.726 1.00101.78 ATOM 14 CA MET A 676 107.071 64.761 40.247 1.00111.80 ATOM 15 CA ARG A 677 105.874 67.729 42.299 1.00114.80 ATOM 16 CA GLU A 678 108.809 69.772 40.975 1.00105.62 ATOM 17 CA ILE A 679 107.197 69.063 37.624 1.00103.88 ATOM 18 CA THR A 680 103.615 69.664 38.672 1.00108.74 ATOM 19 CA GLU A 681 104.495 73.211 39.671 1.00114.81 ATOM 20 CA THR A 682 106.861 73.598 36.717 1.00104.41 ATOM 21 CA ILE A 683 103.627 73.033 34.802 1.00106.49 ATOM 22 CA ALA A 684 101.443 75.312 36.923 1.00116.75 ATOM 23 CA GLU A 685 104.048 78.087 36.738 1.00120.57 ATOM 24 CA ALA A 686 103.739 77.750 32.972 1.00114.04 ATOM 25 CA LYS A 687 99.975 78.106 33.251 1.00114.64 ATOM 26 CA LYS A 688 100.112 81.545 34.835 1.00117.13 ATOM 27 CA LYS A 689 102.888 82.635 32.483 1.00112.12 ATOM 28 CA VAL A 690 100.007 81.925 30.096 1.00106.84 ATOM 29 CA LEU A 691 97.122 83.305 32.143 1.00107.92 ATOM 30 CA ASP A 692 99.047 86.572 32.482 1.00106.20 ATOM 31 CA VAL A 693 99.323 86.764 28.724 1.00 97.40 ATOM 32 CA THR A 694 95.620 85.873 28.678 1.00 91.99 ATOM 33 CA LYS A 695 94.257 88.917 30.483 1.00 96.62 ATOM 34 CA GLU A 696 97.141 91.020 29.191 1.00 93.86 ATOM 35 CA ALA A 697 95.371 90.348 25.873 1.00 90.54 ATOM 36 CA GLN A 698 91.843 90.602 27.188 1.00 89.83 ATOM 37 CA ALA A 699 92.835 94.114 28.288 1.00 89.07 ATOM 38 CA ASN A 700 94.252 94.956 24.851 1.00 91.90 ATOM 39 CA LEU A 701 97.810 95.393 26.158 1.00 94.27 ATOM 40 CA LEU A 702 99.443 93.025 23.678 1.00102.84 ATOM 41 CA THR A 703 101.891 94.152 21.076 1.00109.40 ATOM 42 CA ALA A 704 100.584 92.886 17.774 1.00109.45 ATOM 43 CA LYS A 705 104.158 91.849 16.821 1.00114.19 ATOM 44 CA HIS A 706 105.694 91.094 13.406 1.00114.03 ATOM 45 CA GLY A 707 103.805 87.947 14.187 1.00122.45 ATOM 46 CA MET A 708 100.876 89.516 12.332 1.00122.82 ATOM 47 CA THR A 709 97.284 89.643 13.722 1.00117.68 ATOM 48 CA LEU A 710 96.862 90.183 17.456 1.00116.41 ATOM 49 CA ARG A 711 95.213 86.836 17.956 1.00111.82 ATOM 50 CA GLU A 712 97.745 84.923 15.869 1.00111.98 ATOM 51 CA SER A 713 100.301 86.744 17.947 1.00102.50 ATOM 52 CA PHE A 714 98.606 85.633 21.126 1.00 94.12 ATOM 53 CA GLU A 715 98.827 81.912 20.427 1.00 99.58 ATOM 54 CA ASP A 716 102.433 81.881 19.173 1.00 99.10 ATOM 55 CA ASN A 717 103.297 82.931 22.715 1.00 96.48 ATOM 56 CA VAL A 718 100.959 80.569 24.567 1.00 89.47 ATOM 57 CA VAL A 719 101.992 77.419 22.706 1.00 82.86 ATOM 58 CA ARG A 720 105.659 78.364 22.874 1.00 87.04 ATOM 59 CA PHE A 721 105.006 78.658 26.624 1.00 88.27 ATOM 60 CA LEU A 722 103.505 75.238 27.273 1.00 85.37 ATOM 61 CA ASN A 723 105.848 73.364 24.942 1.00 91.92 ATOM 62 CA GLU A 724 108.773 75.147 26.571 1.00 98.56 ATOM 63 CA ALA A 725 107.342 73.581 29.744 1.00 93.84 ATOM 64 CA ARG A 726 106.840 70.023 28.462 1.00 97.16 ATOM 65 CA ASP A 727 110.314 69.645 27.003 1.00 96.44 ATOM 66 CA LYS A 728 111.804 71.056 30.188 1.00 99.02 ATOM 67 CA ALA A 729 109.291 69.372 32.465 1.00 89.90 ATOM 68 CA GLY A 730 110.903 66.291 31.041 1.00 94.00 ATOM 69 CA ARG A 731 114.516 67.467 31.071 1.00107.08 ATOM 70 CA LEU A 732 113.841 66.898 34.783 1.00105.63 ATOM 71 CA ALA A 733 112.824 63.257 34.858 1.00 99.30 ATOM 72 CA GLU A 734 115.527 62.599 32.210 1.00102.67 ATOM 73 CA VAL A 735 118.220 63.557 34.579 1.00108.80 ATOM 74 CA ASN A 736 116.541 61.982 37.542 1.00104.93 ATOM 75 CA LEU A 737 116.375 58.516 35.916 1.00103.12 ATOM 76 CA LYS A 738 119.431 56.709 37.280 1.00103.19 ATOM 77 CA ASP A 739 121.974 55.030 35.042 1.00 97.46 ATOM 78 CA LEU A 740 120.294 51.718 35.911 1.00 84.80 ATOM 79 CA ASN A 741 116.938 52.489 34.387 1.00 68.95 ATOM 80 CA ASN A 742 116.418 50.176 31.450 1.00 63.29 ATOM 81 CA VAL A 743 114.509 52.714 29.352 1.00 55.45 ATOM 82 CA LYS A 744 117.418 55.072 29.688 1.00 61.37 ATOM 83 CA GLN A 745 119.795 52.282 28.797 1.00 58.76 ATOM 84 CA MET A 746 118.007 51.438 25.600 1.00 58.49 ATOM 85 CA VAL A 747 118.174 55.150 24.860 1.00 58.74 ATOM 86 CA MET A 748 121.848 55.495 25.705 1.00 67.75 ATOM 87 CA ALA A 749 122.909 52.570 23.520 1.00 66.98 ATOM 88 CA GLY A 750 120.393 54.083 21.130 1.00 61.53 ATOM 89 CA SER A 751 118.901 50.655 20.506 1.00 55.81 ATOM 90 CA LYS A 752 115.497 52.164 20.998 1.00 61.50 ATOM 91 CA GLY A 753 113.804 55.255 22.183 1.00 71.77 ATOM 92 CA SER A 754 114.387 58.971 22.520 1.00 75.69 ATOM 93 CA PHE A 755 114.305 61.311 25.451 1.00 73.46 ATOM 94 CA ILE A 756 110.876 62.534 24.218 1.00 60.95 ATOM 95 CA ASN A 757 109.549 59.014 24.935 1.00 64.71 ATOM 96 CA ILE A 758 110.718 59.474 28.482 1.00 59.49 ATOM 97 CA ALA A 759 108.918 62.734 28.906 1.00 60.03 ATOM 98 CA GLN A 760 105.540 61.704 27.500 1.00 64.55 ATOM 99 CA MET A 761 105.624 58.620 29.724 1.00 60.33 ATOM 100 CA SER A 762 106.916 59.790 33.073 1.00 62.05 ATOM 101 CA ALA A 763 106.546 63.611 33.076 1.00 63.02 ATOM 102 CA CYS A 764 103.924 64.957 30.704 1.00 66.14 ATOM 103 CA VAL A 765 102.379 64.213 27.329 1.00 59.94 ATOM 104 CA GLY A 766 101.965 67.653 25.799 1.00 60.05 ATOM 105 CA GLN A 767 99.789 69.970 23.702 1.00 60.97 ATOM 106 CA GLN A 768 97.921 68.260 20.855 1.00 56.42 ATOM 107 CA SER A 769 97.302 69.912 17.484 1.00 64.76 ATOM 108 CA VAL A 770 95.410 70.097 14.212 1.00 71.25 ATOM 109 CA GLU A 771 97.079 71.868 11.275 1.00 87.62 ATOM 110 CA GLY A 772 99.170 73.662 13.891 1.00 81.17 ATOM 111 CA LYS A 773 96.406 75.632 15.591 1.00 84.68 ATOM 112 CA ARG A 774 95.714 73.911 18.935 1.00 70.43 ATOM 113 CA ILE A 775 92.331 72.181 19.353 1.00 62.22 ATOM 114 CA ALA A 776 89.789 74.449 17.666 1.00 72.47 ATOM 115 CA PHE A 777 86.158 75.469 18.242 1.00 82.96 ATOM 116 CA GLY A 778 83.891 73.028 16.428 1.00 82.90 ATOM 117 CA PHE A 779 81.600 73.567 19.346 1.00 75.79 ATOM 118 CA VAL A 780 80.457 77.185 18.838 1.00 70.47 ATOM 119 CA ASP A 781 83.052 79.222 20.715 1.00 68.46 ATOM 120 CA ARG A 782 84.576 76.321 22.718 1.00 64.89 ATOM 121 CA THR A 783 86.056 72.779 22.653 1.00 64.67 ATOM 122 CA LEU A 784 83.800 70.244 24.347 1.00 70.33 ATOM 123 CA PRO A 785 80.296 70.839 25.641 1.00 72.41 ATOM 124 CA HIS A 786 81.991 70.413 29.037 1.00 76.23 ATOM 125 CA PHE A 787 83.335 73.961 28.724 1.00 83.25 ATOM 126 CA SER A 788 82.229 77.585 29.109 1.00 88.45 ATOM 127 CA LYS A 789 82.080 79.592 25.883 1.00 79.95 ATOM 128 CA ASP A 790 85.105 81.674 25.009 1.00 78.63 ATOM 129 CA ASP A 791 87.589 79.824 27.220 1.00 84.63 ATOM 130 CA TYR A 792 91.062 80.257 25.709 1.00 80.42 ATOM 131 CA SER A 793 92.890 78.580 28.613 1.00 82.95 ATOM 132 CA PRO A 794 95.209 75.617 27.782 1.00 85.23 ATOM 133 CA GLU A 795 93.185 72.795 29.373 1.00 86.34 ATOM 134 CA SER A 796 90.780 73.366 26.567 1.00 78.48 ATOM 135 CA LYS A 797 92.653 74.327 23.475 1.00 82.98 ATOM 136 CA GLY A 798 94.142 70.860 23.901 1.00 73.15 ATOM 137 CA PHE A 799 96.913 70.454 26.447 1.00 66.85 ATOM 138 CA VAL A 800 97.532 67.055 28.077 1.00 65.05 ATOM 139 CA GLU A 801 99.125 67.689 31.460 1.00 72.25 ATOM 140 CA ASN A 802 99.275 64.126 32.747 1.00 68.67 ATOM 141 CA SER A 803 102.001 61.685 31.869 1.00 67.71 ATOM 142 CA TYR A 804 101.179 58.448 30.066 1.00 59.78 ATOM 143 CA LEU A 805 101.760 57.019 33.556 1.00 58.57 ATOM 144 CA ARG A 806 98.988 58.941 35.312 1.00 73.22 ATOM 145 CA GLY A 807 96.656 58.700 32.337 1.00 66.12 ATOM 146 CA LEU A 808 94.705 61.238 30.318 1.00 60.77 ATOM 147 CA THR A 809 91.289 62.597 31.272 1.00 53.76 ATOM 148 CA PRO A 810 88.127 62.397 29.128 1.00 50.77 ATOM 149 CA GLN A 811 88.955 65.676 27.493 1.00 56.80 ATOM 150 CA GLU A 812 92.695 65.179 27.213 1.00 51.28 ATOM 151 CA PHE A 813 92.115 61.705 25.801 1.00 43.63 ATOM 152 CA PHE A 814 89.619 62.948 23.212 1.00 41.18 ATOM 153 CA PHE A 815 91.785 65.823 21.948 1.00 52.99 ATOM 154 CA HIS A 816 94.864 63.619 22.016 1.00 54.22 ATOM 155 CA ALA A 817 92.871 61.480 19.647 1.00 53.65 ATOM 156 CA MET A 818 91.935 64.194 17.160 1.00 50.98 ATOM 157 CA GLY A 819 95.645 64.941 17.232 1.00 51.03 ATOM 158 CA GLY A 820 97.154 61.525 16.572 1.00 52.32 ATOM 159 CA ARG A 821 94.534 60.398 14.033 1.00 49.31 ATOM 160 CA GLU A 822 95.966 63.166 11.945 1.00 51.59 ATOM 161 CA GLY A 823 99.126 61.447 10.772 1.00 47.41 ATOM 162 CA LEU A 824 97.127 58.292 10.091 1.00 49.40 ATOM 163 CA ILE A 825 95.526 60.534 7.466 1.00 56.45 ATOM 164 CA ASP A 826 98.192 62.522 5.692 1.00 79.00 ATOM 165 CA THR A 827 99.386 58.950 4.982 1.00 72.08 ATOM 166 CA ALA A 828 96.178 57.915 3.236 1.00 72.88 ATOM 167 CA VAL A 829 96.707 60.666 0.722 1.00 74.52 ATOM 168 CA LYS A 830 100.467 61.063 0.803 1.00 70.74 ATOM 169 CA THR A 831 100.564 57.338 -0.130 1.00 79.54 ATOM 170 CA ALA A 832 98.327 57.920 -3.120 1.00 73.86 ATOM 171 CA GLU A 833 100.435 60.686 -4.709 1.00 71.59 ATOM 172 CA THR A 834 103.779 59.456 -3.370 1.00 59.79 ATOM 173 CA GLY A 835 103.612 56.328 -5.486 1.00 57.63 ATOM 174 CA TYR A 836 103.059 58.225 -8.691 1.00 51.09 ATOM 175 CA ILE A 837 106.088 60.500 -8.164 1.00 37.19 ATOM 176 CA GLN A 838 108.334 57.586 -7.333 1.00 41.62 ATOM 177 CA ARG A 839 107.439 55.923 -10.572 1.00 38.66 ATOM 178 CA ARG A 840 107.723 58.902 -12.967 1.00 38.92 ATOM 179 CA LEU A 841 111.196 59.762 -11.656 1.00 34.01 ATOM 180 CA VAL A 842 112.150 56.156 -12.354 1.00 27.56 ATOM 181 CA LYS A 843 110.443 55.870 -15.669 1.00 26.21 ATOM 182 CA ALA A 844 112.266 59.101 -16.577 1.00 28.91 ATOM 183 CA LEU A 845 115.860 58.108 -15.929 1.00 34.35 ATOM 184 CA GLU A 846 115.730 54.426 -16.943 1.00 39.18 ATOM 185 CA ASP A 847 118.106 54.547 -19.877 1.00 46.47 ATOM 186 CA ILE A 848 120.607 56.730 -18.009 1.00 38.02 ATOM 187 CA MET A 849 123.933 54.932 -17.389 1.00 43.48 ATOM 188 CA VAL A 850 127.612 55.838 -17.343 1.00 41.45 ATOM 189 CA HIS A 851 129.026 54.740 -20.674 1.00 45.15 ATOM 190 CA TYR A 852 132.592 53.756 -21.466 1.00 44.15 ATOM 191 CA ASP A 853 133.842 57.263 -22.367 1.00 42.97 ATOM 192 CA ASN A 854 132.824 58.052 -18.753 1.00 46.09 ATOM 193 CA THR A 855 130.039 60.240 -20.062 1.00 44.04 ATOM 194 CA THR A 856 126.509 59.789 -18.717 1.00 40.11 ATOM 195 CA ARG A 857 124.031 59.347 -21.505 1.00 43.30 ATOM 196 CA ASN A 858 120.559 57.947 -22.152 1.00 49.23 ATOM 197 CA SER A 859 119.098 55.626 -24.786 1.00 52.73 ATOM 198 CA LEU A 860 119.759 58.159 -27.519 1.00 53.48 ATOM 199 CA GLY A 861 123.340 59.348 -27.126 1.00 48.08 ATOM 200 CA ASN A 862 122.381 62.607 -25.506 1.00 47.68 ATOM 201 CA VAL A 863 124.904 63.522 -22.845 1.00 38.20 ATOM 202 CA ILE A 864 123.582 64.556 -19.485 1.00 39.94 ATOM 203 CA GLN A 865 126.813 64.848 -17.623 1.00 42.18 ATOM 204 CA PHE A 866 130.129 64.502 -19.323 1.00 35.54 ATOM 205 CA ILE A 867 131.206 62.997 -16.029 1.00 39.75 ATOM 206 CA TYR A 868 128.780 61.280 -13.695 1.00 39.73 ATOM 207 CA GLY A 869 128.152 63.771 -10.890 1.00 39.23 ATOM 208 CA GLU A 870 130.655 66.064 -12.543 1.00 42.42 ATOM 209 CA ASP A 871 133.442 63.985 -10.948 1.00 41.16 TER