HEADER IMMUNE SYSTEM/SIGNALING PROTEIN 05-APR-05 1ZA3 TITLE The crystal structure of the YSd1 Fab bound to DR5 COMPND MOL_ID: 3; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 10B; COMPND 3 CHAIN: R, S; COMPND 4 FRAGMENT: Extra-cellular ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.35 ANGSTORMS DBREF 1ZA3 S 1 130 UNP O14763 TR10B_HUMAN 54 183 SEQRES 1 S 22 LYS CYS ARG THR GLY CYS PRO ARG GLY MET VAL LYS VAL SEQRES 2 S 22 GLY ASP CYS THR PRO TRP SER ASP ILE ATOM 1 N LYS S 102 27.530 14.030 37.527 1.00 40.95 ATOM 2 CA LYS S 102 27.322 12.602 37.296 1.00 41.62 ATOM 3 C LYS S 102 26.965 12.307 35.835 1.00 39.90 ATOM 4 O LYS S 102 26.162 13.005 35.223 1.00 36.21 ATOM 5 CB LYS S 102 26.215 12.061 38.216 1.00 43.17 ATOM 6 CG LYS S 102 26.711 11.240 39.407 1.00 46.46 ATOM 7 CD LYS S 102 25.627 11.164 40.509 1.00 50.12 ATOM 8 CE LYS S 102 25.842 10.011 41.506 1.00 50.59 ATOM 9 NZ LYS S 102 24.777 9.935 42.555 1.00 48.10 ATOM 10 N CYS S 103 27.596 11.274 35.289 1.00 42.24 ATOM 11 CA CYS S 103 27.187 10.679 34.026 1.00 44.14 ATOM 12 C CYS S 103 25.933 9.866 34.228 1.00 44.61 ATOM 13 O CYS S 103 25.658 9.383 35.335 1.00 46.62 ATOM 14 CB CYS S 103 28.253 9.727 33.510 1.00 46.44 ATOM 15 SG CYS S 103 29.741 10.552 32.970 1.00 53.44 ATOM 16 N ARG S 104 25.187 9.691 33.148 1.00 44.03 ATOM 17 CA ARG S 104 23.997 8.865 33.183 1.00 45.33 ATOM 18 C ARG S 104 24.450 7.417 33.039 1.00 46.37 ATOM 19 O ARG S 104 25.367 7.119 32.267 1.00 43.44 ATOM 20 CB ARG S 104 23.024 9.274 32.074 1.00 45.88 ATOM 21 CG ARG S 104 22.561 10.741 32.160 1.00 45.25 ATOM 22 CD ARG S 104 21.662 11.199 31.002 1.00 45.07 ATOM 23 NE ARG S 104 22.334 11.136 29.701 1.00 44.42 ATOM 24 CZ ARG S 104 21.745 11.387 28.527 1.00 44.19 ATOM 25 NH1 ARG S 104 20.458 11.736 28.463 1.00 43.39 ATOM 26 NH2 ARG S 104 22.455 11.295 27.406 1.00 43.94 ATOM 27 N THR S 105 23.817 6.531 33.804 1.00 49.82 ATOM 28 CA THR S 105 24.204 5.121 33.843 1.00 52.27 ATOM 29 C THR S 105 23.827 4.405 32.551 1.00 53.39 ATOM 30 O THR S 105 24.488 3.450 32.143 1.00 53.97 ATOM 31 CB THR S 105 23.550 4.407 35.044 1.00 53.03 ATOM 32 OG1 THR S 105 22.124 4.524 34.972 1.00 52.85 ATOM 33 CG2 THR S 105 23.915 5.092 36.355 1.00 54.23 ATOM 34 N GLY S 106 22.754 4.867 31.920 1.00 53.96 ATOM 35 CA GLY S 106 22.342 4.333 30.640 1.00 54.92 ATOM 36 C GLY S 106 21.542 5.318 29.819 1.00 55.83 ATOM 37 O GLY S 106 21.367 6.479 30.190 1.00 53.32 ATOM 38 N CYS S 107 21.055 4.833 28.686 1.00 59.13 ATOM 39 CA CYS S 107 20.211 5.621 27.802 1.00 61.61 ATOM 40 C CYS S 107 18.732 5.452 28.173 1.00 64.70 ATOM 41 O CYS S 107 18.374 4.539 28.923 1.00 65.07 ATOM 42 CB CYS S 107 20.440 5.180 26.359 1.00 60.25 ATOM 43 SG CYS S 107 22.162 5.302 25.860 1.00 56.76 ATOM 44 N PRO S 108 17.874 6.336 27.666 1.00 67.01 ATOM 45 CA PRO S 108 16.423 6.125 27.741 1.00 69.15 ATOM 46 C PRO S 108 15.947 4.965 26.848 1.00 71.97 ATOM 47 O PRO S 108 16.777 4.204 26.345 1.00 72.60 ATOM 48 CB PRO S 108 15.853 7.463 27.249 1.00 68.90 ATOM 49 CG PRO S 108 16.992 8.425 27.308 1.00 68.01 ATOM 50 CD PRO S 108 18.207 7.622 27.029 1.00 67.27 ATOM 51 N ARG S 109 14.632 4.834 26.660 1.00 74.46 ATOM 52 CA ARG S 109 14.063 3.793 25.794 1.00 75.26 ATOM 53 C ARG S 109 14.242 4.145 24.311 1.00 74.67 ATOM 54 O ARG S 109 14.046 5.295 23.913 1.00 74.99 ATOM 55 CB ARG S 109 12.570 3.595 26.088 1.00 75.68 ATOM 56 CG ARG S 109 12.242 3.129 27.504 1.00 75.50 ATOM 57 CD ARG S 109 10.742 2.934 27.749 1.00 74.61 ATOM 58 NE ARG S 109 10.401 2.974 29.174 1.00 72.76 ATOM 59 CZ ARG S 109 9.277 3.477 29.688 1.00 70.24 ATOM 60 NH1 ARG S 109 8.334 4.007 28.911 1.00 69.31 ATOM 61 NH2 ARG S 109 9.095 3.452 31.004 1.00 69.30 ATOM 62 N GLY S 110 14.610 3.152 23.501 1.00 73.35 ATOM 63 CA GLY S 110 14.796 3.346 22.070 1.00 71.62 ATOM 64 C GLY S 110 16.023 4.166 21.704 1.00 69.01 ATOM 65 O GLY S 110 16.086 4.749 20.618 1.00 67.87 ATOM 66 N MET S 111 16.988 4.217 22.620 1.00 66.66 ATOM 67 CA MET S 111 18.264 4.906 22.407 1.00 63.10 ATOM 68 C MET S 111 19.406 4.033 22.927 1.00 60.70 ATOM 69 O MET S 111 19.217 3.239 23.846 1.00 60.20 ATOM 70 CB MET S 111 18.272 6.261 23.122 1.00 61.52 ATOM 71 CG MET S 111 17.080 7.157 22.785 1.00 60.50 ATOM 72 SD MET S 111 17.157 8.798 23.545 1.00 58.36 ATOM 73 CE MET S 111 15.699 9.580 22.803 1.00 57.53 ATOM 74 N VAL S 112 20.590 4.184 22.342 1.00 59.55 ATOM 75 CA VAL S 112 21.719 3.307 22.664 1.00 59.84 ATOM 76 C VAL S 112 22.996 4.071 23.021 1.00 61.11 ATOM 77 O VAL S 112 23.175 5.227 22.639 1.00 61.97 ATOM 78 CB VAL S 112 22.023 2.322 21.500 1.00 58.78 ATOM 79 CG1 VAL S 112 20.911 1.295 21.373 1.00 58.79 ATOM 80 CG2 VAL S 112 22.230 3.059 20.174 1.00 58.06 ATOM 81 N LYS S 113 23.877 3.420 23.774 1.00 61.24 ATOM 82 CA LYS S 113 25.201 3.970 24.030 1.00 62.48 ATOM 83 C LYS S 113 25.937 4.124 22.707 1.00 59.94 ATOM 84 O LYS S 113 26.087 3.154 21.961 1.00 60.05 ATOM 85 CB LYS S 113 26.015 3.055 24.953 1.00 66.97 ATOM 86 CG LYS S 113 25.967 3.440 26.429 1.00 70.73 ATOM 87 CD LYS S 113 27.060 4.439 26.816 1.00 72.14 ATOM 88 CE LYS S 113 28.455 3.821 26.847 1.00 72.64 ATOM 89 NZ LYS S 113 28.504 2.442 27.409 1.00 71.80 ATOM 90 N VAL S 114 26.381 5.344 22.420 1.00 56.91 ATOM 91 CA VAL S 114 27.219 5.616 21.254 1.00 54.86 ATOM 92 C VAL S 114 28.581 6.103 21.742 1.00 53.98 ATOM 93 O VAL S 114 29.618 5.515 21.414 1.00 52.07 ATOM 94 CB VAL S 114 26.565 6.659 20.318 1.00 53.05 ATOM 95 CG1 VAL S 114 27.561 7.183 19.275 1.00 52.90 ATOM 96 CG2 VAL S 114 25.354 6.058 19.631 1.00 52.01 ATOM 97 N GLY S 115 28.555 7.178 22.526 1.00 54.45 ATOM 98 CA GLY S 115 29.736 7.716 23.172 1.00 54.97 ATOM 99 C GLY S 115 29.750 7.394 24.655 1.00 55.27 ATOM 100 O GLY S 115 28.709 7.363 25.310 1.00 54.03 ATOM 101 N ASP S 116 30.944 7.159 25.183 1.00 57.61 ATOM 102 CA ASP S 116 31.112 6.807 26.585 1.00 60.47 ATOM 103 C ASP S 116 31.056 8.028 27.499 1.00 60.75 ATOM 104 O ASP S 116 30.945 9.175 27.046 1.00 61.36 ATOM 105 CB ASP S 116 32.451 6.089 26.796 1.00 62.91 ATOM 106 CG ASP S 116 32.413 4.654 26.352 1.00 65.05 ATOM 107 OD1 ASP S 116 31.546 3.902 26.845 1.00 66.09 ATOM 108 OD2 ASP S 116 33.216 4.189 25.517 1.00 67.48 ATOM 109 N CYS S 117 31.110 7.740 28.797 1.00 58.37 ATOM 110 CA CYS S 117 31.329 8.733 29.832 1.00 54.31 ATOM 111 C CYS S 117 32.823 9.023 29.889 1.00 50.50 ATOM 112 O CYS S 117 33.635 8.095 29.924 1.00 49.40 ATOM 113 CB CYS S 117 30.845 8.175 31.172 1.00 55.77 ATOM 114 SG CYS S 117 31.213 9.188 32.620 1.00 59.50 ATOM 115 N THR S 118 33.174 10.306 29.858 1.00 47.43 ATOM 116 CA THR S 118 34.552 10.763 30.038 1.00 45.52 ATOM 117 C THR S 118 34.579 11.847 31.101 1.00 42.91 ATOM 118 O THR S 118 33.538 12.334 31.515 1.00 43.47 ATOM 119 CB THR S 118 35.084 11.362 28.735 1.00 48.51 ATOM 120 OG1 THR S 118 34.258 12.463 28.331 1.00 50.76 ATOM 121 CG2 THR S 118 34.956 10.388 27.590 1.00 51.10 ATOM 122 N PRO S 119 35.760 12.251 31.542 1.00 41.21 ATOM 123 CA PRO S 119 35.881 13.447 32.375 1.00 41.94 ATOM 124 C PRO S 119 35.411 14.750 31.723 1.00 45.47 ATOM 125 O PRO S 119 35.299 15.736 32.451 1.00 46.65 ATOM 126 CB PRO S 119 37.379 13.520 32.649 1.00 41.53 ATOM 127 CG PRO S 119 37.847 12.154 32.498 1.00 41.66 ATOM 128 CD PRO S 119 37.057 11.586 31.363 1.00 42.44 ATOM 129 N TRP S 120 35.161 14.768 30.410 1.00 49.53 ATOM 130 CA TRP S 120 34.711 15.986 29.720 1.00 52.21 ATOM 131 C TRP S 120 33.345 15.906 28.995 1.00 49.04 ATOM 132 O TRP S 120 32.982 16.839 28.279 1.00 47.33 ATOM 133 CB TRP S 120 35.787 16.464 28.735 1.00 56.84 ATOM 134 CG TRP S 120 37.203 16.280 29.217 1.00 61.43 ATOM 135 CD1 TRP S 120 37.967 17.174 29.923 1.00 64.56 ATOM 136 CD2 TRP S 120 38.021 15.134 29.013 1.00 62.67 ATOM 137 NE1 TRP S 120 39.210 16.643 30.170 1.00 64.79 ATOM 138 CE2 TRP S 120 39.268 15.389 29.620 1.00 63.56 ATOM 139 CE3 TRP S 120 37.825 13.905 28.380 1.00 64.53 ATOM 140 CZ2 TRP S 120 40.302 14.465 29.609 1.00 64.25 ATOM 141 CZ3 TRP S 120 38.851 12.991 28.370 1.00 65.20 ATOM 142 CH2 TRP S 120 40.073 13.272 28.983 1.00 65.00 ATOM 143 N SER S 121 32.583 14.829 29.190 1.00 47.10 ATOM 144 CA SER S 121 31.222 14.745 28.642 1.00 46.27 ATOM 145 C SER S 121 30.337 13.682 29.293 1.00 46.51 ATOM 146 O SER S 121 30.815 12.795 29.998 1.00 47.85 ATOM 147 CB SER S 121 31.270 14.461 27.147 1.00 47.10 ATOM 148 OG SER S 121 31.525 13.089 26.918 1.00 47.97 ATOM 149 N ASP S 122 29.037 13.779 29.027 1.00 45.31 ATOM 150 CA ASP S 122 28.086 12.722 29.373 1.00 42.74 ATOM 151 C ASP S 122 28.244 11.606 28.341 1.00 41.57 ATOM 152 O ASP S 122 29.009 11.732 27.387 1.00 38.02 ATOM 153 CB ASP S 122 26.641 13.271 29.343 1.00 40.96 ATOM 154 CG ASP S 122 25.731 12.661 30.413 1.00 37.08 ATOM 155 OD1 ASP S 122 26.056 11.590 30.956 1.00 35.53 ATOM 156 OD2 ASP S 122 24.659 13.194 30.774 1.00 33.14 ATOM 157 N ILE S 123 27.528 10.508 28.533 1.00 45.01 ATOM 158 CA ILE S 123 27.329 9.552 27.444 1.00 47.02 ATOM 159 C ILE S 123 26.442 10.222 26.388 1.00 48.93 ATOM 160 O ILE S 123 25.731 11.193 26.685 1.00 46.69 ATOM 161 CB ILE S 123 26.701 8.206 27.939 1.00 45.42 ATOM 162 CG1 ILE S 123 25.335 8.427 28.599 1.00 46.11 ATOM 163 CG2 ILE S 123 27.631 7.502 28.917 1.00 44.79 ATOM 164 CD1 ILE S 123 24.565 7.141 28.857 1.00 46.85 TER