HEADER TRANSCRIPTION 06-MAR-06 2DFY TITLE Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 TITLE 2 and 2 with the LIM interacting domain of LDB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: fusion protein of LIM domain transcription factor LMO4 and COMPND 3 LIM domain-binding protein 1; COMPND 4 CHAIN: X, C; COMPND 5 MUTATION: YES; COMPND 6 ; COMPND 7 ENGINEERED: YES; COMPND 8 Cyclised fusion of LMO4 residues 18-152 to LDB1 LID residues 300-339 COMPND 9 OTHER_DETAILS: via two flexible linkers with sequence GGSGGSGGSGG and TRESGSIEF; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.65 ANGSTORMS DBREF 2DFY X 18 152 UNP P61969 LMO4_MOUSE 18 152 DBREF 2DFY X 300 339 UNP P61969 LMO4_MOUSE 300 339 SEQRES 1 X 31 GLY ASN SER GLY ALA CYS SER ALA CYS GLY GLN SER ILE SEQRES 2 X 31 PRO ALA SER GLU LEU VAL MET ARG ALA GLN GLY ASN VAL SEQRES 3 X 31 TYR HIS LEU LYS CYS ATOM 1 N GLY X 82 33.557 -30.809 27.021 1.00 46.13 ATOM 2 CA GLY X 82 34.405 -30.417 25.887 1.00 48.26 ATOM 3 C GLY X 82 33.571 -30.177 24.633 1.00 50.37 ATOM 4 O GLY X 82 32.443 -30.630 24.535 1.00 51.07 ATOM 5 N ASN X 83 34.130 -29.450 23.683 1.00 52.20 ATOM 6 CA ASN X 83 33.391 -29.069 22.471 1.00 53.16 ATOM 7 C ASN X 83 33.370 -30.233 21.523 1.00 53.72 ATOM 8 O ASN X 83 34.385 -30.554 20.926 1.00 54.36 ATOM 9 CB ASN X 83 34.040 -27.850 21.804 1.00 54.54 ATOM 10 CG ASN X 83 33.706 -26.553 22.510 1.00 57.74 ATOM 11 OD1 ASN X 83 32.569 -26.340 22.968 1.00 63.06 ATOM 12 ND2 ASN X 83 34.686 -25.656 22.579 1.00 61.69 ATOM 13 N SER X 84 32.224 -30.897 21.420 1.00 54.56 ATOM 14 CA SER X 84 32.066 -31.982 20.463 1.00 54.43 ATOM 15 C SER X 84 31.869 -31.333 19.100 1.00 54.87 ATOM 16 O SER X 84 31.605 -30.128 19.016 1.00 54.19 ATOM 17 CB SER X 84 30.865 -32.843 20.814 1.00 54.98 ATOM 18 OG SER X 84 29.697 -32.045 20.896 1.00 57.27 ATOM 19 N GLY X 85 31.997 -32.134 18.044 1.00 54.94 ATOM 20 CA GLY X 85 31.748 -31.637 16.685 1.00 54.59 ATOM 21 C GLY X 85 30.885 -32.595 15.906 1.00 54.33 ATOM 22 O GLY X 85 30.215 -33.445 16.466 1.00 54.36 ATOM 23 N ALA X 86 30.919 -32.468 14.590 1.00 54.30 ATOM 24 CA ALA X 86 30.127 -33.330 13.720 1.00 53.93 ATOM 25 C ALA X 86 30.897 -33.530 12.420 1.00 53.27 ATOM 26 O ALA X 86 31.558 -32.600 11.962 1.00 53.02 ATOM 27 CB ALA X 86 28.777 -32.684 13.464 1.00 54.36 ATOM 28 N CYS X 87 30.823 -34.740 11.859 1.00 52.84 ATOM 29 CA CYS X 87 31.575 -35.102 10.654 1.00 53.06 ATOM 30 C CYS X 87 30.873 -34.556 9.437 1.00 52.99 ATOM 31 O CYS X 87 29.706 -34.865 9.232 1.00 53.09 ATOM 32 CB CYS X 87 31.656 -36.609 10.480 1.00 52.33 ATOM 33 SG CYS X 87 32.710 -37.119 9.105 1.00 53.27 ATOM 34 N SER X 88 31.583 -33.772 8.638 1.00 53.15 ATOM 35 CA SER X 88 30.997 -33.196 7.417 1.00 53.99 ATOM 36 C SER X 88 30.633 -34.260 6.358 1.00 55.08 ATOM 37 O SER X 88 29.737 -34.043 5.513 1.00 55.11 ATOM 38 CB SER X 88 31.935 -32.146 6.822 1.00 53.57 ATOM 39 OG SER X 88 31.832 -30.917 7.524 1.00 53.39 ATOM 40 N ALA X 89 31.323 -35.398 6.398 1.00 55.59 ATOM 41 CA ALA X 89 31.082 -36.484 5.463 1.00 56.59 ATOM 42 C ALA X 89 29.847 -37.290 5.814 1.00 57.70 ATOM 43 O ALA X 89 28.965 -37.460 4.974 1.00 59.21 ATOM 44 CB ALA X 89 32.306 -37.396 5.391 1.00 56.29 ATOM 45 N CYS X 90 29.767 -37.801 7.036 1.00 58.11 ATOM 46 CA CYS X 90 28.676 -38.703 7.411 1.00 58.17 ATOM 47 C CYS X 90 27.593 -38.060 8.279 1.00 58.47 ATOM 48 O CYS X 90 26.539 -38.660 8.511 1.00 58.48 ATOM 49 CB CYS X 90 29.237 -39.939 8.109 1.00 58.21 ATOM 50 SG CYS X 90 29.850 -39.619 9.764 1.00 57.35 ATOM 51 N GLY X 91 27.851 -36.846 8.754 1.00 58.98 ATOM 52 CA GLY X 91 26.862 -36.083 9.514 1.00 59.45 ATOM 53 C GLY X 91 26.783 -36.408 10.995 1.00 60.03 ATOM 54 O GLY X 91 26.070 -35.719 11.734 1.00 59.47 ATOM 55 N GLN X 92 27.502 -37.443 11.432 1.00 60.62 ATOM 56 CA GLN X 92 27.349 -37.955 12.794 1.00 61.10 ATOM 57 C GLN X 92 28.261 -37.198 13.750 1.00 61.29 ATOM 58 O GLN X 92 29.352 -36.776 13.381 1.00 61.26 ATOM 59 CB GLN X 92 27.645 -39.452 12.869 1.00 61.65 ATOM 60 CG GLN X 92 26.870 -40.325 11.867 1.00 63.81 ATOM 61 CD GLN X 92 25.356 -40.258 12.039 1.00 66.48 ATOM 62 OE1 GLN X 92 24.783 -40.920 12.912 1.00 69.69 ATOM 63 NE2 GLN X 92 24.699 -39.470 11.188 1.00 68.12 ATOM 64 N SER X 93 27.800 -37.029 14.984 1.00 61.38 ATOM 65 CA SER X 93 28.556 -36.306 15.996 1.00 61.46 ATOM 66 C SER X 93 29.915 -36.952 16.219 1.00 61.31 ATOM 67 O SER X 93 30.077 -38.170 16.017 1.00 61.82 ATOM 68 CB SER X 93 27.795 -36.312 17.316 1.00 62.01 ATOM 69 OG SER X 93 27.711 -37.640 17.819 1.00 64.16 ATOM 70 N ILE X 94 30.880 -36.128 16.621 1.00 60.48 ATOM 71 CA ILE X 94 32.215 -36.582 16.983 1.00 59.96 ATOM 72 C ILE X 94 32.478 -36.157 18.428 1.00 59.54 ATOM 73 O ILE X 94 32.326 -34.974 18.758 1.00 59.74 ATOM 74 CB ILE X 94 33.270 -35.936 16.101 1.00 60.02 ATOM 75 CG1 ILE X 94 33.045 -36.296 14.623 0.50 59.91 ATOM 76 CG2 ILE X 94 34.678 -36.360 16.536 0.50 60.09 ATOM 77 CD1 ILE X 94 33.710 -35.317 13.657 0.50 59.59 ATOM 78 N PRO X 95 32.870 -37.107 19.300 1.00 58.98 ATOM 79 CA PRO X 95 33.178 -36.628 20.647 1.00 58.45 ATOM 80 C PRO X 95 34.460 -35.784 20.679 1.00 57.63 ATOM 81 O PRO X 95 35.376 -35.987 19.878 1.00 56.49 ATOM 82 CB PRO X 95 33.356 -37.914 21.479 1.00 58.63 ATOM 83 CG PRO X 95 33.097 -39.066 20.555 1.00 58.87 ATOM 84 CD PRO X 95 33.071 -38.557 19.146 1.00 58.87 ATOM 85 N ALA X 96 34.531 -34.880 21.646 1.00 57.46 ATOM 86 CA ALA X 96 35.725 -34.068 21.896 1.00 57.67 ATOM 87 C ALA X 96 37.040 -34.833 22.038 1.00 57.63 ATOM 88 O ALA X 96 38.106 -34.256 21.807 1.00 56.85 ATOM 89 CB ALA X 96 35.512 -33.215 23.130 1.00 57.87 ATOM 90 N SER X 97 36.971 -36.106 22.441 1.00 57.55 ATOM 91 CA SER X 97 38.176 -36.924 22.681 1.00 57.69 ATOM 92 C SER X 97 38.719 -37.586 21.429 1.00 58.08 ATOM 93 O SER X 97 39.818 -38.139 21.446 1.00 57.91 ATOM 94 CB SER X 97 37.857 -38.044 23.653 1.00 57.65 ATOM 95 OG SER X 97 36.768 -38.826 23.176 1.00 58.70 ATOM 96 N GLU X 98 37.941 -37.561 20.346 1.00 57.91 ATOM 97 CA GLU X 98 38.340 -38.287 19.141 1.00 57.99 ATOM 98 C GLU X 98 39.242 -37.419 18.273 1.00 58.03 ATOM 99 O GLU X 98 39.058 -36.204 18.196 1.00 58.41 ATOM 100 CB GLU X 98 37.099 -38.762 18.386 1.00 57.83 ATOM 101 CG GLU X 98 37.419 -39.551 17.138 1.00 57.92 ATOM 102 CD GLU X 98 36.199 -40.141 16.476 1.00 58.20 ATOM 103 OE1 GLU X 98 35.129 -40.261 17.124 1.00 57.93 ATOM 104 OE2 GLU X 98 36.335 -40.497 15.289 1.00 59.36 ATOM 105 N LEU X 99 40.230 -38.039 17.641 1.00 58.11 ATOM 106 CA LEU X 99 41.079 -37.337 16.687 1.00 58.68 ATOM 107 C LEU X 99 40.283 -37.157 15.406 1.00 59.11 ATOM 108 O LEU X 99 39.502 -38.034 15.033 1.00 59.84 ATOM 109 CB LEU X 99 42.356 -38.118 16.368 1.00 58.90 ATOM 110 CG LEU X 99 43.469 -38.098 17.418 1.00 59.49 ATOM 111 CD1 LEU X 99 44.610 -39.005 16.967 1.00 60.32 ATOM 112 CD2 LEU X 99 43.974 -36.680 17.675 1.00 59.87 ATOM 113 N VAL X 100 40.482 -36.030 14.740 1.00 59.06 ATOM 114 CA VAL X 100 39.754 -35.742 13.505 1.00 59.01 ATOM 115 C VAL X 100 40.690 -35.184 12.457 1.00 59.72 ATOM 116 O VAL X 100 41.732 -34.600 12.784 1.00 59.62 ATOM 117 CB VAL X 100 38.594 -34.732 13.728 1.00 58.87 ATOM 118 CG1 VAL X 100 37.535 -35.329 14.608 1.00 58.25 ATOM 119 CG2 VAL X 100 39.096 -33.408 14.303 1.00 58.39 ATOM 120 N MET X 101 40.310 -35.370 11.190 1.00 59.72 ATOM 121 CA MET X 101 40.967 -34.691 10.103 1.00 60.55 ATOM 122 C MET X 101 40.155 -33.432 9.831 1.00 60.61 ATOM 123 O MET X 101 38.942 -33.390 10.071 1.00 59.25 ATOM 124 CB MET X 101 41.029 -35.561 8.854 1.00 60.75 ATOM 125 CG MET X 101 41.760 -36.883 9.041 1.00 62.68 ATOM 126 SD MET X 101 43.466 -36.697 9.631 1.00 65.87 ATOM 127 CE MET X 101 44.324 -36.147 8.187 1.00 66.83 ATOM 128 N ARG X 102 40.866 -32.412 9.364 1.00 61.50 ATOM 129 CA ARG X 102 40.299 -31.106 9.088 1.00 62.02 ATOM 130 C ARG X 102 40.567 -30.770 7.641 1.00 61.87 ATOM 131 O ARG X 102 41.632 -31.088 7.108 1.00 62.50 ATOM 132 CB ARG X 102 40.909 -30.048 10.021 1.00 62.88 ATOM 133 CG ARG X 102 40.592 -30.279 11.508 1.00 63.81 ATOM 134 CD ARG X 102 40.564 -28.986 12.351 1.00 65.00 ATOM 135 NE ARG X 102 39.611 -29.082 13.475 1.00 66.03 ATOM 136 CZ ARG X 102 39.933 -29.339 14.748 1.00 68.56 ATOM 137 NH1 ARG X 102 41.203 -29.498 15.109 1.00 69.08 ATOM 138 NH2 ARG X 102 38.983 -29.414 15.685 1.00 68.80 ATOM 139 N ALA X 103 39.578 -30.179 6.980 1.00 61.07 ATOM 140 CA ALA X 103 39.770 -29.640 5.644 1.00 60.71 ATOM 141 C ALA X 103 38.752 -28.536 5.411 1.00 60.02 ATOM 142 O ALA X 103 37.567 -28.706 5.694 1.00 58.87 ATOM 143 CB ALA X 103 39.626 -30.718 4.581 1.00 60.61 ATOM 144 N GLN X 104 39.242 -27.404 4.925 1.00 59.82 ATOM 145 CA GLN X 104 38.398 -26.290 4.544 1.00 60.42 ATOM 146 C GLN X 104 37.387 -25.911 5.618 1.00 60.06 ATOM 147 O GLN X 104 36.235 -25.595 5.317 1.00 60.93 ATOM 148 CB GLN X 104 37.717 -26.646 3.223 1.00 61.08 ATOM 149 CG GLN X 104 38.740 -26.824 2.120 1.00 63.66 ATOM 150 CD GLN X 104 39.273 -25.512 1.622 1.00 66.41 ATOM 151 OE1 GLN X 104 40.462 -25.225 1.743 1.00 69.38 ATOM 152 NE2 GLN X 104 38.392 -24.691 1.068 1.00 68.88 ATOM 153 N GLY X 105 37.826 -25.955 6.871 1.00 59.24 ATOM 154 CA GLY X 105 36.989 -25.573 8.001 1.00 59.00 ATOM 155 C GLY X 105 35.955 -26.605 8.411 1.00 58.55 ATOM 156 O GLY X 105 35.078 -26.319 9.224 1.00 58.70 ATOM 157 N ASN X 106 36.052 -27.800 7.845 1.00 57.42 ATOM 158 CA ASN X 106 35.218 -28.912 8.253 1.00 57.36 ATOM 159 C ASN X 106 36.045 -29.896 9.077 1.00 56.41 ATOM 160 O ASN X 106 37.268 -29.868 9.031 1.00 56.05 ATOM 161 CB ASN X 106 34.689 -29.628 7.023 1.00 57.49 ATOM 162 CG ASN X 106 33.947 -28.700 6.086 1.00 58.91 ATOM 163 OD1 ASN X 106 34.126 -28.773 4.868 1.00 61.25 ATOM 164 ND2 ASN X 106 33.113 -27.819 6.646 1.00 56.40 ATOM 165 N VAL X 107 35.371 -30.770 9.799 1.00 56.05 ATOM 166 CA VAL X 107 36.045 -31.853 10.490 1.00 56.09 ATOM 167 C VAL X 107 35.461 -33.178 10.051 1.00 55.56 ATOM 168 O VAL X 107 34.276 -33.252 9.708 1.00 54.87 ATOM 169 CB VAL X 107 35.984 -31.713 12.026 1.00 56.61 ATOM 170 CG1 VAL X 107 36.775 -30.497 12.469 1.00 57.77 ATOM 171 CG2 VAL X 107 34.568 -31.641 12.529 1.00 57.49 ATOM 172 N TYR X 108 36.313 -34.212 10.040 1.00 55.06 ATOM 173 CA TYR X 108 35.940 -35.537 9.541 1.00 54.92 ATOM 174 C TYR X 108 36.453 -36.600 10.495 1.00 54.93 ATOM 175 O TYR X 108 37.517 -36.411 11.087 1.00 54.32 ATOM 176 CB TYR X 108 36.569 -35.784 8.173 1.00 54.56 ATOM 177 CG TYR X 108 36.193 -34.754 7.126 1.00 54.16 ATOM 178 CD1 TYR X 108 36.899 -33.563 7.014 1.00 54.90 ATOM 179 CD2 TYR X 108 35.143 -34.979 6.251 1.00 54.57 ATOM 180 CE1 TYR X 108 36.556 -32.603 6.054 1.00 54.91 ATOM 181 CE2 TYR X 108 34.795 -34.025 5.284 1.00 54.40 ATOM 182 CZ TYR X 108 35.513 -32.855 5.189 1.00 54.92 ATOM 183 OH TYR X 108 35.181 -31.902 4.241 1.00 55.91 ATOM 184 N HIS X 109 35.696 -37.690 10.641 1.00 55.13 ATOM 185 CA HIS X 109 36.225 -38.946 11.203 1.00 55.60 ATOM 186 C HIS X 109 37.380 -39.386 10.347 1.00 56.13 ATOM 187 O HIS X 109 37.320 -39.232 9.129 1.00 55.88 ATOM 188 CB HIS X 109 35.198 -40.069 11.137 1.00 55.74 ATOM 189 CG HIS X 109 34.015 -39.872 12.020 1.00 55.93 ATOM 190 ND1 HIS X 109 32.733 -39.755 11.530 1.00 57.29 ATOM 191 CD2 HIS X 109 33.913 -39.804 13.368 1.00 56.17 ATOM 192 CE1 HIS X 109 31.893 -39.601 12.542 1.00 57.87 ATOM 193 NE2 HIS X 109 32.584 -39.624 13.668 1.00 57.12 ATOM 194 N LEU X 110 38.417 -39.980 10.945 1.00 56.42 ATOM 195 CA LEU X 110 39.574 -40.426 10.152 1.00 57.20 ATOM 196 C LEU X 110 39.157 -41.328 8.990 1.00 57.13 ATOM 197 O LEU X 110 39.630 -41.161 7.853 1.00 57.78 ATOM 198 CB LEU X 110 40.636 -41.123 11.028 1.00 57.09 ATOM 199 CG LEU X 110 41.640 -40.156 11.648 1.00 58.80 ATOM 200 CD1 LEU X 110 40.955 -39.233 12.615 1.00 59.97 ATOM 201 CD2 LEU X 110 42.768 -40.914 12.369 1.00 58.21 ATOM 202 N LYS X 111 38.254 -42.260 9.262 1.00 57.62 ATOM 203 CA LYS X 111 37.826 -43.213 8.235 1.00 58.01 ATOM 204 C LYS X 111 36.826 -42.599 7.259 1.00 57.85 ATOM 205 O LYS X 111 36.448 -43.247 6.286 1.00 57.94 ATOM 206 CB LYS X 111 37.233 -44.489 8.856 1.00 58.64 ATOM 207 CG LYS X 111 38.258 -45.367 9.575 1.00 59.36 ATOM 208 CD LYS X 111 37.808 -46.836 9.583 0.50 59.25 ATOM 209 CE LYS X 111 38.932 -47.788 9.948 0.50 59.82 ATOM 210 NZ LYS X 111 39.217 -47.756 11.402 0.50 61.11 ATOM 211 N CYS X 112 36.409 -41.358 7.511 1.00 57.36 ATOM 212 CA CYS X 112 35.546 -40.624 6.582 1.00 56.88 ATOM 213 C CYS X 112 36.336 -39.705 5.670 1.00 56.40 ATOM 214 O CYS X 112 35.802 -39.175 4.691 1.00 56.51 ATOM 215 CB CYS X 112 34.487 -39.829 7.347 1.00 56.86 ATOM 216 SG CYS X 112 33.225 -40.893 8.006 1.00 56.16 ATOM 217 ZN ZN X 604 32.123 -39.479 9.509 1.00 58.53 TER