HEADER LIGASE/RNA 20-JUL-06 2DU5 TITLE Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA TITLE 2 synthetase E418N/E420N mutant complexed with tRNAOpal and TITLE 3 O-phosphoserine ("opal complex") COMPND MOL_ID: 2; COMPND 2 MOLECULE: O-phosphoseryl-tRNA synthetase; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.-; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.20 ANGSTORMS DBREF 2DU5 A 1 534 UNP O30126 O30126_ARCF 1 534 SEQRES 1 A 32 ASN GLU VAL VAL VAL TYR LYS GLY ASP ILE TYR GLY ILE SEQRES 2 A 32 PRO LYS THR LYS LYS TRP ARG SER PHE PHE GLU GLU GLY SEQRES 3 A 32 VAL PRO THR GLY ILE ARG ATOM 1 N ASN A 432 39.252 24.109 -21.203 1.00145.45 ATOM 2 CA ASN A 432 39.216 25.508 -21.600 1.00127.86 ATOM 3 C ASN A 432 38.628 26.345 -20.465 1.00136.94 ATOM 4 O ASN A 432 37.786 25.869 -19.694 1.00 43.86 ATOM 5 CB ASN A 432 38.395 25.677 -22.880 1.00118.85 ATOM 6 CG ASN A 432 39.056 25.034 -24.080 1.00154.35 ATOM 7 OD1 ASN A 432 39.382 23.849 -24.060 1.00193.50 ATOM 8 ND2 ASN A 432 39.256 25.815 -25.135 1.00133.73 ATOM 9 N GLU A 433 39.092 27.590 -20.367 1.00138.00 ATOM 10 CA GLU A 433 38.659 28.522 -19.328 1.00108.68 ATOM 11 C GLU A 433 38.091 29.799 -19.947 1.00118.34 ATOM 12 O GLU A 433 38.482 30.194 -21.045 1.00 90.72 ATOM 13 CB GLU A 433 39.854 28.858 -18.429 1.00 94.74 ATOM 14 CG GLU A 433 39.600 29.901 -17.358 1.00109.88 ATOM 15 CD GLU A 433 40.837 30.164 -16.520 1.00133.82 ATOM 16 OE1 GLU A 433 41.910 30.410 -17.112 1.00141.00 ATOM 17 OE2 GLU A 433 40.741 30.127 -15.275 1.00123.06 ATOM 18 N VAL A 434 37.163 30.437 -19.239 1.00111.86 ATOM 19 CA VAL A 434 36.550 31.670 -19.721 1.00 71.47 ATOM 20 C VAL A 434 37.410 32.869 -19.330 1.00 82.09 ATOM 21 O VAL A 434 37.563 33.174 -18.146 1.00 71.61 ATOM 22 CB VAL A 434 35.146 31.887 -19.112 1.00 75.10 ATOM 23 CG1 VAL A 434 34.454 33.039 -19.817 1.00 80.58 ATOM 24 CG2 VAL A 434 34.322 30.613 -19.197 1.00 55.30 ATOM 25 N VAL A 435 37.981 33.542 -20.321 1.00 47.39 ATOM 26 CA VAL A 435 38.799 34.717 -20.049 1.00 89.32 ATOM 27 C VAL A 435 38.239 35.931 -20.786 1.00 90.81 ATOM 28 O VAL A 435 37.671 35.808 -21.871 1.00 90.55 ATOM 29 CB VAL A 435 40.274 34.504 -20.468 1.00 53.14 ATOM 30 CG1 VAL A 435 40.831 33.286 -19.773 1.00 91.47 ATOM 31 CG2 VAL A 435 40.382 34.358 -21.976 1.00123.26 ATOM 32 N VAL A 436 38.387 37.102 -20.177 1.00 76.16 ATOM 33 CA VAL A 436 37.907 38.337 -20.774 1.00 35.22 ATOM 34 C VAL A 436 39.104 39.135 -21.261 1.00 56.80 ATOM 35 O VAL A 436 39.990 39.476 -20.480 1.00 73.34 ATOM 36 CB VAL A 436 37.136 39.185 -19.754 1.00 56.44 ATOM 37 CG1 VAL A 436 36.639 40.455 -20.414 1.00 96.51 ATOM 38 CG2 VAL A 436 35.977 38.386 -19.173 1.00 37.63 ATOM 39 N TYR A 437 39.138 39.418 -22.556 1.00 60.93 ATOM 40 CA TYR A 437 40.233 40.183 -23.133 1.00 74.85 ATOM 41 C TYR A 437 39.686 41.197 -24.123 1.00 85.92 ATOM 42 O TYR A 437 38.795 40.894 -24.919 1.00 67.58 ATOM 43 CB TYR A 437 41.227 39.251 -23.826 1.00 69.58 ATOM 44 CG TYR A 437 42.399 39.952 -24.481 1.00 57.69 ATOM 45 CD1 TYR A 437 42.549 39.949 -25.869 1.00 78.18 ATOM 46 CD2 TYR A 437 43.373 40.587 -23.716 1.00 71.02 ATOM 47 CE1 TYR A 437 43.645 40.557 -26.478 1.00 67.97 ATOM 48 CE2 TYR A 437 44.473 41.201 -24.315 1.00 75.62 ATOM 49 CZ TYR A 437 44.603 41.181 -25.694 1.00 95.83 ATOM 50 OH TYR A 437 45.693 41.774 -26.286 1.00 84.11 ATOM 51 N LYS A 438 40.231 42.406 -24.055 1.00 56.05 ATOM 52 CA LYS A 438 39.820 43.504 -24.916 1.00 66.13 ATOM 53 C LYS A 438 38.334 43.524 -25.252 1.00 53.68 ATOM 54 O LYS A 438 37.946 43.619 -26.415 1.00 88.23 ATOM 55 CB LYS A 438 40.659 43.523 -26.196 1.00 73.88 ATOM 56 CG LYS A 438 42.076 44.027 -25.967 1.00 58.37 ATOM 57 CD LYS A 438 42.817 44.249 -27.271 1.00109.32 ATOM 58 CE LYS A 438 44.177 44.874 -27.009 1.00162.22 ATOM 59 NZ LYS A 438 44.060 46.149 -26.242 1.00161.85 ATOM 60 N GLY A 439 37.511 43.422 -24.215 1.00 46.53 ATOM 61 CA GLY A 439 36.072 43.485 -24.385 1.00 35.85 ATOM 62 C GLY A 439 35.329 42.264 -24.870 1.00 53.22 ATOM 63 O GLY A 439 34.109 42.315 -25.042 1.00101.60 ATOM 64 N ASP A 440 36.033 41.166 -25.092 1.00 43.21 ATOM 65 CA ASP A 440 35.360 39.972 -25.573 1.00 60.58 ATOM 66 C ASP A 440 35.457 38.841 -24.561 1.00 79.61 ATOM 67 O ASP A 440 36.423 38.750 -23.806 1.00 78.65 ATOM 68 CB ASP A 440 35.965 39.522 -26.908 1.00 48.45 ATOM 69 CG ASP A 440 36.022 40.640 -27.938 1.00100.27 ATOM 70 OD1 ASP A 440 34.965 41.228 -28.251 1.00126.82 ATOM 71 OD2 ASP A 440 37.132 40.923 -28.440 1.00 66.61 ATOM 72 N ILE A 441 34.438 37.991 -24.543 1.00 58.58 ATOM 73 CA ILE A 441 34.410 36.848 -23.650 1.00 51.54 ATOM 74 C ILE A 441 34.836 35.628 -24.469 1.00 79.27 ATOM 75 O ILE A 441 34.138 35.232 -25.402 1.00 80.77 ATOM 76 CB ILE A 441 32.993 36.618 -23.094 1.00 54.53 ATOM 77 CG1 ILE A 441 32.510 37.881 -22.388 1.00 40.41 ATOM 78 CG2 ILE A 441 32.987 35.439 -22.123 1.00 58.65 ATOM 79 CD1 ILE A 441 31.228 37.688 -21.593 1.00 60.56 ATOM 80 N TYR A 442 35.979 35.041 -24.124 1.00 89.72 ATOM 81 CA TYR A 442 36.496 33.876 -24.839 1.00 71.46 ATOM 82 C TYR A 442 36.445 32.566 -24.058 1.00 96.34 ATOM 83 O TYR A 442 36.417 32.548 -22.826 1.00 78.04 ATOM 84 CB TYR A 442 37.944 34.120 -25.271 1.00 56.24 ATOM 85 CG TYR A 442 38.106 35.075 -26.433 1.00105.63 ATOM 86 CD1 TYR A 442 37.653 34.738 -27.707 1.00101.16 ATOM 87 CD2 TYR A 442 38.740 36.305 -26.267 1.00105.69 ATOM 88 CE1 TYR A 442 37.833 35.599 -28.792 1.00112.14 ATOM 89 CE2 TYR A 442 38.922 37.175 -27.343 1.00143.25 ATOM 90 CZ TYR A 442 38.469 36.816 -28.603 1.00154.09 ATOM 91 OH TYR A 442 38.667 37.666 -29.672 1.00147.78 ATOM 92 N GLY A 443 36.435 31.468 -24.807 1.00137.65 ATOM 93 CA GLY A 443 36.424 30.139 -24.225 1.00137.71 ATOM 94 C GLY A 443 37.631 29.430 -24.808 1.00101.51 ATOM 95 O GLY A 443 37.508 28.553 -25.661 1.00 85.93 ATOM 96 N ILE A 444 38.808 29.827 -24.341 1.00 55.70 ATOM 97 CA ILE A 444 40.064 29.282 -24.826 1.00 79.63 ATOM 98 C ILE A 444 40.795 28.405 -23.810 1.00108.51 ATOM 99 O ILE A 444 40.493 28.441 -22.616 1.00 79.20 ATOM 100 CB ILE A 444 41.002 30.431 -25.241 1.00 86.62 ATOM 101 CG1 ILE A 444 41.260 31.344 -24.036 1.00108.35 ATOM 102 CG2 ILE A 444 40.373 31.231 -26.375 1.00 90.48 ATOM 103 CD1 ILE A 444 42.084 32.580 -24.348 1.00129.57 ATOM 104 N PRO A 445 41.751 27.583 -24.287 1.00117.22 ATOM 105 CA PRO A 445 42.565 26.678 -23.471 1.00 94.93 ATOM 106 C PRO A 445 43.953 27.303 -23.305 1.00100.19 ATOM 107 O PRO A 445 44.452 27.947 -24.230 1.00 94.44 ATOM 108 CB PRO A 445 42.608 25.426 -24.323 1.00101.91 ATOM 109 CG PRO A 445 42.805 26.015 -25.688 1.00 97.65 ATOM 110 CD PRO A 445 41.839 27.197 -25.711 1.00106.72 ATOM 111 N LYS A 446 44.577 27.115 -22.144 1.00 67.95 ATOM 112 CA LYS A 446 45.900 27.691 -21.900 1.00 98.36 ATOM 113 C LYS A 446 46.952 27.175 -22.876 1.00 57.80 ATOM 114 O LYS A 446 47.309 26.000 -22.858 1.00104.27 ATOM 115 CB LYS A 446 46.347 27.420 -20.462 1.00110.22 ATOM 116 CG LYS A 446 46.512 28.683 -19.631 1.00 91.93 ATOM 117 CD LYS A 446 46.916 28.370 -18.202 1.00132.12 ATOM 118 CE LYS A 446 47.197 29.647 -17.429 1.00150.27 ATOM 119 NZ LYS A 446 48.234 30.467 -18.116 1.00107.78 ATOM 120 N THR A 447 47.450 28.068 -23.723 1.00 96.46 ATOM 121 CA THR A 447 48.448 27.704 -24.718 1.00 99.13 ATOM 122 C THR A 447 49.338 28.900 -25.057 1.00134.36 ATOM 123 O THR A 447 48.942 30.050 -24.871 1.00169.82 ATOM 124 CB THR A 447 47.763 27.216 -26.004 1.00117.37 ATOM 125 OG1 THR A 447 46.671 26.352 -25.663 1.00 84.01 ATOM 126 CG2 THR A 447 48.751 26.455 -26.878 1.00162.12 ATOM 127 N LYS A 448 50.540 28.623 -25.555 1.00149.47 ATOM 128 CA LYS A 448 51.483 29.676 -25.931 1.00148.96 ATOM 129 C LYS A 448 50.906 30.490 -27.085 1.00146.18 ATOM 130 O LYS A 448 51.521 31.448 -27.558 1.00120.33 ATOM 131 CB LYS A 448 52.826 29.065 -26.347 1.00144.53 ATOM 132 CG LYS A 448 53.597 28.380 -25.216 1.00198.94 ATOM 133 CD LYS A 448 52.809 27.241 -24.567 1.00201.58 ATOM 134 CE LYS A 448 52.481 26.134 -25.562 1.00201.58 ATOM 135 NZ LYS A 448 51.644 25.059 -24.954 1.00174.45 ATOM 136 N LYS A 449 49.719 30.087 -27.529 1.00133.68 ATOM 137 CA LYS A 449 49.008 30.747 -28.616 1.00136.92 ATOM 138 C LYS A 449 48.046 31.759 -28.010 1.00147.08 ATOM 139 O LYS A 449 47.617 32.705 -28.671 1.00165.91 ATOM 140 CB LYS A 449 48.211 29.714 -29.418 1.00141.94 ATOM 141 CG LYS A 449 47.368 30.295 -30.548 1.00166.38 ATOM 142 CD LYS A 449 46.413 29.254 -31.127 1.00119.65 ATOM 143 CE LYS A 449 45.770 29.735 -32.428 1.00115.72 ATOM 144 NZ LYS A 449 45.000 31.001 -32.271 1.00114.67 ATOM 145 N TRP A 450 47.722 31.551 -26.739 1.00134.33 ATOM 146 CA TRP A 450 46.786 32.408 -26.027 1.00111.28 ATOM 147 C TRP A 450 47.382 33.231 -24.891 1.00 98.37 ATOM 148 O TRP A 450 46.658 33.977 -24.237 1.00 91.01 ATOM 149 CB TRP A 450 45.646 31.555 -25.467 1.00106.41 ATOM 150 CG TRP A 450 44.686 31.028 -26.494 1.00130.11 ATOM 151 CD1 TRP A 450 44.084 29.802 -26.495 1.00119.80 ATOM 152 CD2 TRP A 450 44.148 31.738 -27.619 1.00124.45 ATOM 153 NE1 TRP A 450 43.204 29.705 -27.545 1.00136.44 ATOM 154 CE2 TRP A 450 43.222 30.879 -28.251 1.00117.74 ATOM 155 CE3 TRP A 450 44.356 33.018 -28.153 1.00143.83 ATOM 156 CZ2 TRP A 450 42.505 31.258 -29.390 1.00 98.20 ATOM 157 CZ3 TRP A 450 43.641 33.394 -29.288 1.00148.99 ATOM 158 CH2 TRP A 450 42.727 32.515 -29.893 1.00111.92 ATOM 159 N ARG A 451 48.682 33.099 -24.643 1.00 94.46 ATOM 160 CA ARG A 451 49.317 33.850 -23.558 1.00110.47 ATOM 161 C ARG A 451 48.753 35.260 -23.413 1.00123.69 ATOM 162 O ARG A 451 48.323 35.664 -22.329 1.00 71.35 ATOM 163 CB ARG A 451 50.831 33.937 -23.768 1.00 87.49 ATOM 164 CG ARG A 451 51.616 32.755 -23.222 1.00 96.56 ATOM 165 CD ARG A 451 53.112 33.024 -23.315 1.00165.36 ATOM 166 NE ARG A 451 53.912 31.987 -22.669 1.00200.67 ATOM 167 CZ ARG A 451 55.239 32.014 -22.576 1.00201.58 ATOM 168 NH1 ARG A 451 55.884 31.026 -21.971 1.00201.40 ATOM 169 NH2 ARG A 451 55.923 33.028 -23.089 1.00194.24 ATOM 170 N SER A 452 48.751 36.000 -24.516 1.00132.79 ATOM 171 CA SER A 452 48.250 37.368 -24.537 1.00128.03 ATOM 172 C SER A 452 46.876 37.540 -23.878 1.00109.02 ATOM 173 O SER A 452 46.534 38.631 -23.427 1.00110.87 ATOM 174 CB SER A 452 48.199 37.868 -25.982 1.00148.04 ATOM 175 OG SER A 452 47.487 36.961 -26.808 1.00159.31 ATOM 176 N PHE A 453 46.096 36.467 -23.814 1.00 43.94 ATOM 177 CA PHE A 453 44.765 36.528 -23.217 1.00 64.68 ATOM 178 C PHE A 453 44.735 36.154 -21.737 1.00 86.63 ATOM 179 O PHE A 453 43.664 36.069 -21.134 1.00102.56 ATOM 180 CB PHE A 453 43.806 35.617 -23.988 1.00 66.50 ATOM 181 CG PHE A 453 43.501 36.092 -25.377 1.00 77.34 ATOM 182 CD1 PHE A 453 44.514 36.585 -26.199 1.00 73.93 ATOM 183 CD2 PHE A 453 42.204 36.028 -25.875 1.00 67.09 ATOM 184 CE1 PHE A 453 44.240 37.008 -27.496 1.00 96.30 ATOM 185 CE2 PHE A 453 41.922 36.449 -27.171 1.00111.57 ATOM 186 CZ PHE A 453 42.940 36.940 -27.984 1.00120.43 ATOM 187 N PHE A 454 45.902 35.917 -21.152 1.00 58.96 ATOM 188 CA PHE A 454 45.965 35.562 -19.743 1.00 84.35 ATOM 189 C PHE A 454 46.907 36.518 -19.019 1.00 96.60 ATOM 190 O PHE A 454 46.919 36.580 -17.790 1.00135.95 ATOM 191 CB PHE A 454 46.465 34.120 -19.553 1.00130.37 ATOM 192 CG PHE A 454 45.525 33.050 -20.076 1.00131.36 ATOM 193 CD1 PHE A 454 45.381 32.828 -21.444 1.00109.45 ATOM 194 CD2 PHE A 454 44.817 32.234 -19.190 1.00116.69 ATOM 195 CE1 PHE A 454 44.552 31.806 -21.923 1.00 80.32 ATOM 196 CE2 PHE A 454 43.982 31.209 -19.660 1.00 46.69 ATOM 197 CZ PHE A 454 43.853 30.997 -21.029 1.00 62.07 ATOM 198 N GLU A 455 47.697 37.263 -19.784 1.00 56.18 ATOM 199 CA GLU A 455 48.649 38.199 -19.199 1.00107.38 ATOM 200 C GLU A 455 48.260 39.640 -19.502 1.00118.25 ATOM 201 O GLU A 455 49.040 40.574 -19.290 1.00111.50 ATOM 202 CB GLU A 455 50.054 37.921 -19.735 1.00134.74 ATOM 203 CG GLU A 455 50.507 36.478 -19.570 1.00156.80 ATOM 204 CD GLU A 455 51.928 36.255 -20.051 1.00168.50 ATOM 205 OE1 GLU A 455 52.229 36.602 -21.214 1.00150.91 ATOM 206 OE2 GLU A 455 52.744 35.729 -19.264 1.00184.36 ATOM 207 N GLU A 456 47.046 39.813 -20.009 1.00 89.86 ATOM 208 CA GLU A 456 46.541 41.136 -20.336 1.00 80.29 ATOM 209 C GLU A 456 45.041 41.145 -20.099 1.00 73.47 ATOM 210 O GLU A 456 44.446 42.197 -19.876 1.00 83.51 ATOM 211 CB GLU A 456 46.860 41.484 -21.793 1.00 94.90 ATOM 212 CG GLU A 456 48.355 41.478 -22.112 1.00120.37 ATOM 213 CD GLU A 456 48.666 41.830 -23.561 1.00153.90 ATOM 214 OE1 GLU A 456 49.848 41.717 -23.957 1.00 93.21 ATOM 215 OE2 GLU A 456 47.735 42.223 -24.300 1.00130.01 ATOM 216 N GLY A 457 44.435 39.961 -20.139 1.00 64.99 ATOM 217 CA GLY A 457 43.007 39.853 -19.906 1.00 52.55 ATOM 218 C GLY A 457 42.742 39.508 -18.455 1.00 53.59 ATOM 219 O GLY A 457 43.602 39.688 -17.598 1.00 66.86 ATOM 220 N VAL A 458 41.548 39.017 -18.163 1.00 35.15 ATOM 221 CA VAL A 458 41.222 38.642 -16.798 1.00 75.01 ATOM 222 C VAL A 458 40.425 37.350 -16.784 1.00 86.51 ATOM 223 O VAL A 458 39.230 37.333 -17.078 1.00 44.10 ATOM 224 CB VAL A 458 40.440 39.753 -16.081 1.00 37.68 ATOM 225 CG1 VAL A 458 41.319 40.979 -15.958 1.00 58.57 ATOM 226 CG2 VAL A 458 39.182 40.092 -16.848 1.00114.37 ATOM 227 N PRO A 459 41.097 36.238 -16.461 1.00 79.47 ATOM 228 CA PRO A 459 40.493 34.908 -16.399 1.00 47.53 ATOM 229 C PRO A 459 39.406 34.848 -15.344 1.00 68.27 ATOM 230 O PRO A 459 39.577 35.379 -14.247 1.00 64.76 ATOM 231 CB PRO A 459 41.677 34.013 -16.051 1.00126.84 ATOM 232 CG PRO A 459 42.846 34.748 -16.649 1.00 98.70 ATOM 233 CD PRO A 459 42.550 36.157 -16.241 1.00 53.39 ATOM 234 N THR A 460 38.290 34.206 -15.673 1.00 63.98 ATOM 235 CA THR A 460 37.194 34.087 -14.726 1.00 44.38 ATOM 236 C THR A 460 37.500 32.970 -13.745 1.00 83.20 ATOM 237 O THR A 460 36.871 32.863 -12.693 1.00 86.37 ATOM 238 CB THR A 460 35.883 33.749 -15.420 1.00 73.62 ATOM 239 OG1 THR A 460 34.824 33.733 -14.453 1.00115.10 ATOM 240 CG2 THR A 460 35.979 32.387 -16.066 1.00 59.78 ATOM 241 N GLY A 461 38.469 32.133 -14.104 1.00 80.52 ATOM 242 CA GLY A 461 38.842 31.030 -13.241 1.00112.47 ATOM 243 C GLY A 461 37.905 29.854 -13.413 1.00 93.57 ATOM 244 O GLY A 461 38.024 28.838 -12.729 1.00 91.41 ATOM 245 N ILE A 462 36.958 29.995 -14.329 1.00 83.35 ATOM 246 CA ILE A 462 36.012 28.927 -14.588 1.00 71.62 ATOM 247 C ILE A 462 36.341 28.215 -15.896 1.00 96.31 ATOM 248 O ILE A 462 36.557 28.842 -16.935 1.00 83.03 ATOM 249 CB ILE A 462 34.574 29.458 -14.663 1.00 77.06 ATOM 250 CG1 ILE A 462 34.191 30.106 -13.336 1.00 63.02 ATOM 251 CG2 ILE A 462 33.623 28.323 -14.995 1.00 63.53 ATOM 252 CD1 ILE A 462 32.730 30.481 -13.249 1.00 57.72 ATOM 253 N ARG A 463 36.387 26.893 -15.830 1.00 83.95 ATOM 254 CA ARG A 463 36.673 26.081 -16.998 1.00 68.03 ATOM 255 C ARG A 463 35.413 25.284 -17.316 1.00 88.31 ATOM 256 O ARG A 463 34.621 24.982 -16.423 1.00 75.43 ATOM 257 CB ARG A 463 37.829 25.133 -16.697 1.00 80.48 ATOM 258 CG ARG A 463 39.088 25.830 -16.227 1.00 90.29 ATOM 259 CD ARG A 463 40.082 24.832 -15.665 1.00106.91 ATOM 260 NE ARG A 463 39.553 24.160 -14.482 1.00 77.78 ATOM 261 CZ ARG A 463 40.223 23.259 -13.771 1.00135.47 ATOM 262 NH1 ARG A 463 39.658 22.701 -12.707 1.00120.38 ATOM 263 NH2 ARG A 463 41.457 22.916 -14.125 1.00 81.54 TER