HEADER LIGASE/RNA 20-JUL-06 2DU6 TITLE Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA TITLE 2 synthetase E418N/E420N mutant complexed with tRNAAmber and TITLE 3 O-phosphoserine ("amber complex") COMPND MOL_ID: 2; COMPND 2 MOLECULE: O-phosphoseryl-tRNA synthetase; COMPND 3 CHAIN: A, B; COMPND 4 MUTATION: YES; COMPND 5 EC: 6.1.1.-; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 2DU6 A 1 534 UNP O30126 O30126_ARCF 1 534 SEQRES 1 A 32 ASN GLU VAL VAL VAL TYR LYS GLY ASP ILE TYR GLY ILE SEQRES 2 A 32 PRO LYS THR LYS LYS TRP ARG SER PHE PHE GLU GLU GLY SEQRES 3 A 32 VAL PRO THR GLY ILE ARG ATOM 1 N ASN A 432 38.960 24.250 -20.594 1.00119.96 ATOM 2 CA ASN A 432 38.995 25.565 -21.211 1.00114.84 ATOM 3 C ASN A 432 38.419 26.560 -20.219 1.00109.72 ATOM 4 O ASN A 432 37.371 26.317 -19.619 1.00 82.09 ATOM 5 CB ASN A 432 38.186 25.575 -22.510 1.00119.41 ATOM 6 CG ASN A 432 38.976 25.045 -23.691 1.00121.05 ATOM 7 OD1 ASN A 432 39.566 23.966 -23.626 1.00133.58 ATOM 8 ND2 ASN A 432 38.989 25.802 -24.779 1.00117.04 ATOM 9 N GLU A 433 39.124 27.674 -20.049 1.00113.70 ATOM 10 CA GLU A 433 38.724 28.725 -19.122 1.00110.66 ATOM 11 C GLU A 433 38.063 29.882 -19.870 1.00103.47 ATOM 12 O GLU A 433 38.246 30.043 -21.078 1.00 96.21 ATOM 13 CB GLU A 433 39.959 29.216 -18.359 1.00 99.57 ATOM 14 CG GLU A 433 39.686 30.130 -17.179 1.00 92.87 ATOM 15 CD GLU A 433 40.937 30.371 -16.353 1.00110.63 ATOM 16 OE1 GLU A 433 41.965 30.769 -16.940 1.00109.10 ATOM 17 OE2 GLU A 433 40.899 30.160 -15.122 1.00118.06 ATOM 18 N VAL A 434 37.285 30.680 -19.146 1.00 92.46 ATOM 19 CA VAL A 434 36.601 31.820 -19.737 1.00 68.30 ATOM 20 C VAL A 434 37.382 33.092 -19.421 1.00 72.83 ATOM 21 O VAL A 434 37.261 33.643 -18.325 1.00 73.04 ATOM 22 CB VAL A 434 35.177 31.972 -19.164 1.00 62.90 ATOM 23 CG1 VAL A 434 34.427 33.046 -19.922 1.00 73.37 ATOM 24 CG2 VAL A 434 34.443 30.650 -19.220 1.00 49.47 ATOM 25 N VAL A 435 38.193 33.554 -20.367 1.00 55.91 ATOM 26 CA VAL A 435 38.964 34.771 -20.142 1.00 60.60 ATOM 27 C VAL A 435 38.379 35.963 -20.884 1.00 69.75 ATOM 28 O VAL A 435 38.119 35.897 -22.082 1.00 89.50 ATOM 29 CB VAL A 435 40.443 34.622 -20.579 1.00 45.84 ATOM 30 CG1 VAL A 435 41.167 33.696 -19.640 1.00 66.78 ATOM 31 CG2 VAL A 435 40.524 34.104 -22.002 1.00 65.70 ATOM 32 N VAL A 436 38.160 37.050 -20.157 1.00 70.65 ATOM 33 CA VAL A 436 37.640 38.267 -20.755 1.00 61.03 ATOM 34 C VAL A 436 38.873 39.033 -21.206 1.00 52.49 ATOM 35 O VAL A 436 39.827 39.176 -20.448 1.00 60.90 ATOM 36 CB VAL A 436 36.879 39.126 -19.724 1.00 75.82 ATOM 37 CG1 VAL A 436 36.271 40.342 -20.411 1.00 84.75 ATOM 38 CG2 VAL A 436 35.803 38.294 -19.037 1.00 66.14 ATOM 39 N TYR A 437 38.867 39.509 -22.442 1.00 48.14 ATOM 40 CA TYR A 437 40.006 40.259 -22.953 1.00 48.70 ATOM 41 C TYR A 437 39.586 41.191 -24.084 1.00 56.11 ATOM 42 O TYR A 437 38.865 40.796 -25.007 1.00 47.41 ATOM 43 CB TYR A 437 41.104 39.295 -23.413 1.00 40.94 ATOM 44 CG TYR A 437 42.183 39.928 -24.262 1.00 46.04 ATOM 45 CD1 TYR A 437 42.082 39.947 -25.653 1.00 70.32 ATOM 46 CD2 TYR A 437 43.301 40.511 -23.678 1.00 60.01 ATOM 47 CE1 TYR A 437 43.075 40.534 -26.443 1.00 72.91 ATOM 48 CE2 TYR A 437 44.299 41.103 -24.459 1.00 61.91 ATOM 49 CZ TYR A 437 44.179 41.111 -25.836 1.00 61.01 ATOM 50 OH TYR A 437 45.154 41.707 -26.600 1.00 71.13 ATOM 51 N LYS A 438 40.044 42.436 -23.992 1.00 50.76 ATOM 52 CA LYS A 438 39.723 43.464 -24.969 1.00 41.26 ATOM 53 C LYS A 438 38.220 43.635 -25.157 1.00 49.36 ATOM 54 O LYS A 438 37.771 44.126 -26.192 1.00 78.43 ATOM 55 CB LYS A 438 40.389 43.163 -26.311 1.00 46.14 ATOM 56 CG LYS A 438 41.816 43.667 -26.420 1.00 64.36 ATOM 57 CD LYS A 438 41.871 45.181 -26.294 1.00 98.49 ATOM 58 CE LYS A 438 43.258 45.716 -26.619 1.00114.51 ATOM 59 NZ LYS A 438 44.312 45.093 -25.771 1.00135.31 ATOM 60 N GLY A 439 37.445 43.215 -24.160 1.00 39.12 ATOM 61 CA GLY A 439 36.003 43.378 -24.221 1.00 43.12 ATOM 62 C GLY A 439 35.183 42.249 -24.803 1.00 53.58 ATOM 63 O GLY A 439 33.973 42.401 -24.995 1.00 64.06 ATOM 64 N ASP A 440 35.826 41.123 -25.089 1.00 48.75 ATOM 65 CA ASP A 440 35.126 39.972 -25.645 1.00 34.82 ATOM 66 C ASP A 440 35.287 38.800 -24.680 1.00 45.43 ATOM 67 O ASP A 440 36.383 38.566 -24.170 1.00 48.26 ATOM 68 CB ASP A 440 35.727 39.585 -26.996 1.00 44.03 ATOM 69 CG ASP A 440 36.320 40.769 -27.747 1.00 83.75 ATOM 70 OD1 ASP A 440 35.566 41.707 -28.090 1.00104.15 ATOM 71 OD2 ASP A 440 37.548 40.755 -27.998 1.00 85.77 ATOM 72 N ILE A 441 34.209 38.070 -24.411 1.00 27.79 ATOM 73 CA ILE A 441 34.313 36.920 -23.523 1.00 43.27 ATOM 74 C ILE A 441 34.816 35.737 -24.347 1.00 59.30 ATOM 75 O ILE A 441 34.314 35.484 -25.439 1.00 60.61 ATOM 76 CB ILE A 441 32.956 36.550 -22.892 1.00 34.94 ATOM 77 CG1 ILE A 441 32.428 37.719 -22.067 1.00 35.02 ATOM 78 CG2 ILE A 441 33.114 35.336 -21.984 1.00 35.96 ATOM 79 CD1 ILE A 441 31.232 37.356 -21.210 1.00 32.80 ATOM 80 N TYR A 442 35.814 35.022 -23.830 1.00 77.34 ATOM 81 CA TYR A 442 36.379 33.872 -24.533 1.00 71.32 ATOM 82 C TYR A 442 36.378 32.575 -23.739 1.00 90.17 ATOM 83 O TYR A 442 36.475 32.573 -22.510 1.00 86.06 ATOM 84 CB TYR A 442 37.817 34.152 -24.965 1.00 43.10 ATOM 85 CG TYR A 442 37.945 34.971 -26.221 1.00 73.79 ATOM 86 CD1 TYR A 442 37.385 34.532 -27.415 1.00 82.66 ATOM 87 CD2 TYR A 442 38.653 36.170 -26.226 1.00 91.20 ATOM 88 CE1 TYR A 442 37.530 35.266 -28.593 1.00102.61 ATOM 89 CE2 TYR A 442 38.804 36.914 -27.397 1.00104.90 ATOM 90 CZ TYR A 442 38.241 36.455 -28.578 1.00104.96 ATOM 91 OH TYR A 442 38.403 37.173 -29.744 1.00109.70 ATOM 92 N GLY A 443 36.273 31.473 -24.475 1.00109.02 ATOM 93 CA GLY A 443 36.292 30.145 -23.887 1.00109.41 ATOM 94 C GLY A 443 37.451 29.422 -24.548 1.00 98.23 ATOM 95 O GLY A 443 37.268 28.628 -25.470 1.00 94.37 ATOM 96 N ILE A 444 38.657 29.715 -24.076 1.00 86.53 ATOM 97 CA ILE A 444 39.861 29.126 -24.634 1.00 83.49 ATOM 98 C ILE A 444 40.673 28.348 -23.601 1.00 84.89 ATOM 99 O ILE A 444 40.431 28.455 -22.399 1.00 76.44 ATOM 100 CB ILE A 444 40.749 30.226 -25.235 1.00 89.11 ATOM 101 CG1 ILE A 444 41.177 31.205 -24.136 1.00100.99 ATOM 102 CG2 ILE A 444 39.983 30.962 -26.325 1.00 99.79 ATOM 103 CD1 ILE A 444 42.035 32.364 -24.619 1.00103.87 ATOM 104 N PRO A 445 41.638 27.536 -24.069 1.00 86.56 ATOM 105 CA PRO A 445 42.509 26.724 -23.215 1.00 86.26 ATOM 106 C PRO A 445 43.882 27.393 -23.093 1.00 88.54 ATOM 107 O PRO A 445 44.317 28.074 -24.021 1.00 81.89 ATOM 108 CB PRO A 445 42.584 25.422 -23.984 1.00 97.62 ATOM 109 CG PRO A 445 42.732 25.933 -25.398 1.00 86.86 ATOM 110 CD PRO A 445 41.719 27.071 -25.469 1.00 89.15 ATOM 111 N LYS A 446 44.566 27.204 -21.966 1.00 83.07 ATOM 112 CA LYS A 446 45.882 27.820 -21.799 1.00 95.41 ATOM 113 C LYS A 446 46.857 27.291 -22.845 1.00 96.44 ATOM 114 O LYS A 446 46.990 26.085 -23.034 1.00 99.32 ATOM 115 CB LYS A 446 46.441 27.569 -20.393 1.00105.13 ATOM 116 CG LYS A 446 45.699 28.299 -19.277 1.00101.03 ATOM 117 CD LYS A 446 46.653 28.731 -18.163 1.00107.94 ATOM 118 CE LYS A 446 47.486 29.961 -18.553 1.00117.29 ATOM 119 NZ LYS A 446 48.339 29.799 -19.773 1.00103.35 ATOM 120 N THR A 447 47.541 28.207 -23.520 1.00105.50 ATOM 121 CA THR A 447 48.482 27.835 -24.565 1.00105.35 ATOM 122 C THR A 447 49.577 28.887 -24.709 1.00121.03 ATOM 123 O THR A 447 49.568 29.912 -24.025 1.00139.44 ATOM 124 CB THR A 447 47.749 27.710 -25.910 1.00 91.39 ATOM 125 OG1 THR A 447 46.561 26.932 -25.731 1.00 99.00 ATOM 126 CG2 THR A 447 48.628 27.034 -26.942 1.00122.10 ATOM 127 N LYS A 448 50.527 28.616 -25.597 1.00128.08 ATOM 128 CA LYS A 448 51.623 29.535 -25.876 1.00128.07 ATOM 129 C LYS A 448 51.115 30.395 -27.029 1.00120.35 ATOM 130 O LYS A 448 51.826 31.248 -27.568 1.00105.50 ATOM 131 CB LYS A 448 52.876 28.758 -26.305 1.00137.46 ATOM 132 CG LYS A 448 53.499 27.878 -25.214 1.00143.45 ATOM 133 CD LYS A 448 52.552 26.786 -24.698 1.00140.51 ATOM 134 CE LYS A 448 52.221 25.745 -25.766 1.00133.38 ATOM 135 NZ LYS A 448 51.281 24.696 -25.263 1.00 98.58 ATOM 136 N LYS A 449 49.861 30.140 -27.388 1.00109.68 ATOM 137 CA LYS A 449 49.174 30.833 -28.465 1.00114.21 ATOM 138 C LYS A 449 48.209 31.845 -27.866 1.00113.20 ATOM 139 O LYS A 449 47.932 32.889 -28.456 1.00123.63 ATOM 140 CB LYS A 449 48.395 29.818 -29.304 1.00120.99 ATOM 141 CG LYS A 449 47.484 30.418 -30.363 1.00132.50 ATOM 142 CD LYS A 449 46.656 29.332 -31.042 1.00127.34 ATOM 143 CE LYS A 449 45.799 29.892 -32.169 1.00122.88 ATOM 144 NZ LYS A 449 44.819 30.904 -31.691 1.00117.31 ATOM 145 N TRP A 450 47.710 31.525 -26.678 1.00107.87 ATOM 146 CA TRP A 450 46.755 32.376 -25.981 1.00 97.45 ATOM 147 C TRP A 450 47.360 33.298 -24.928 1.00 88.51 ATOM 148 O TRP A 450 46.659 34.150 -24.391 1.00 88.72 ATOM 149 CB TRP A 450 45.681 31.504 -25.321 1.00102.80 ATOM 150 CG TRP A 450 44.643 30.958 -26.265 1.00114.10 ATOM 151 CD1 TRP A 450 44.036 29.736 -26.194 1.00113.20 ATOM 152 CD2 TRP A 450 44.033 31.642 -27.368 1.00110.87 ATOM 153 NE1 TRP A 450 43.086 29.618 -27.179 1.00111.10 ATOM 154 CE2 TRP A 450 43.062 30.774 -27.913 1.00109.32 ATOM 155 CE3 TRP A 450 44.210 32.906 -27.948 1.00115.04 ATOM 156 CZ2 TRP A 450 42.270 31.129 -29.010 1.00107.82 ATOM 157 CZ3 TRP A 450 43.422 33.258 -29.038 1.00115.88 ATOM 158 CH2 TRP A 450 42.464 32.371 -29.556 1.00110.59 ATOM 159 N ARG A 451 48.649 33.134 -24.634 1.00 89.38 ATOM 160 CA ARG A 451 49.312 33.956 -23.619 1.00 99.89 ATOM 161 C ARG A 451 48.788 35.388 -23.551 1.00 98.44 ATOM 162 O ARG A 451 48.337 35.849 -22.500 1.00 93.03 ATOM 163 CB ARG A 451 50.825 33.988 -23.847 1.00108.02 ATOM 164 CG ARG A 451 51.562 32.750 -23.363 1.00123.83 ATOM 165 CD ARG A 451 53.068 32.965 -23.437 1.00149.31 ATOM 166 NE ARG A 451 53.825 31.784 -23.030 1.00169.47 ATOM 167 CZ ARG A 451 55.153 31.723 -22.993 1.00174.98 ATOM 168 NH1 ARG A 451 55.757 30.607 -22.611 1.00176.75 ATOM 169 NH2 ARG A 451 55.879 32.779 -23.338 1.00177.89 ATOM 170 N SER A 452 48.853 36.088 -24.676 1.00 95.57 ATOM 171 CA SER A 452 48.384 37.462 -24.742 1.00 97.58 ATOM 172 C SER A 452 47.064 37.658 -23.993 1.00 95.56 ATOM 173 O SER A 452 46.842 38.692 -23.368 1.00104.90 ATOM 174 CB SER A 452 48.214 37.877 -26.206 1.00106.14 ATOM 175 OG SER A 452 47.384 36.962 -26.904 1.00105.65 ATOM 176 N PHE A 453 46.198 36.653 -24.041 1.00 79.99 ATOM 177 CA PHE A 453 44.897 36.735 -23.393 1.00 70.10 ATOM 178 C PHE A 453 44.880 36.434 -21.903 1.00 73.83 ATOM 179 O PHE A 453 44.019 36.929 -21.177 1.00 86.80 ATOM 180 CB PHE A 453 43.908 35.816 -24.113 1.00 78.07 ATOM 181 CG PHE A 453 43.555 36.281 -25.495 1.00 87.57 ATOM 182 CD1 PHE A 453 44.556 36.552 -26.427 1.00 89.19 ATOM 183 CD2 PHE A 453 42.228 36.473 -25.861 1.00 79.36 ATOM 184 CE1 PHE A 453 44.244 37.010 -27.702 1.00 93.30 ATOM 185 CE2 PHE A 453 41.905 36.932 -27.135 1.00 97.86 ATOM 186 CZ PHE A 453 42.915 37.203 -28.057 1.00103.40 ATOM 187 N PHE A 454 45.816 35.622 -21.436 1.00 74.84 ATOM 188 CA PHE A 454 45.841 35.298 -20.019 1.00 89.68 ATOM 189 C PHE A 454 46.716 36.273 -19.232 1.00 93.27 ATOM 190 O PHE A 454 46.675 36.298 -18.001 1.00103.49 ATOM 191 CB PHE A 454 46.328 33.855 -19.800 1.00 98.39 ATOM 192 CG PHE A 454 45.329 32.791 -20.210 1.00 80.36 ATOM 193 CD1 PHE A 454 45.138 32.466 -21.550 1.00 73.09 ATOM 194 CD2 PHE A 454 44.582 32.111 -19.247 1.00 63.44 ATOM 195 CE1 PHE A 454 44.223 31.483 -21.923 1.00 52.70 ATOM 196 CE2 PHE A 454 43.663 31.127 -19.611 1.00 34.41 ATOM 197 CZ PHE A 454 43.484 30.814 -20.949 1.00 46.29 ATOM 198 N GLU A 455 47.496 37.085 -19.938 1.00 81.94 ATOM 199 CA GLU A 455 48.372 38.045 -19.274 1.00100.28 ATOM 200 C GLU A 455 47.950 39.494 -19.503 1.00100.39 ATOM 201 O GLU A 455 48.541 40.421 -18.943 1.00108.52 ATOM 202 CB GLU A 455 49.819 37.854 -19.740 1.00125.04 ATOM 203 CG GLU A 455 50.412 36.489 -19.414 1.00140.40 ATOM 204 CD GLU A 455 51.883 36.384 -19.782 1.00148.07 ATOM 205 OE1 GLU A 455 52.221 36.593 -20.967 1.00153.59 ATOM 206 OE2 GLU A 455 52.700 36.092 -18.882 1.00155.31 ATOM 207 N GLU A 456 46.937 39.689 -20.338 1.00 83.40 ATOM 208 CA GLU A 456 46.442 41.029 -20.617 1.00 75.92 ATOM 209 C GLU A 456 44.972 41.098 -20.233 1.00 63.26 ATOM 210 O GLU A 456 44.497 42.107 -19.713 1.00 70.35 ATOM 211 CB GLU A 456 46.617 41.376 -22.097 1.00 78.98 ATOM 212 CG GLU A 456 48.063 41.499 -22.545 1.00 96.52 ATOM 213 CD GLU A 456 48.187 41.973 -23.984 1.00116.82 ATOM 214 OE1 GLU A 456 49.331 42.138 -24.463 1.00127.86 ATOM 215 OE2 GLU A 456 47.141 42.183 -24.635 1.00118.31 ATOM 216 N GLY A 457 44.249 40.017 -20.493 1.00 50.88 ATOM 217 CA GLY A 457 42.846 39.985 -20.137 1.00 51.97 ATOM 218 C GLY A 457 42.733 39.632 -18.668 1.00 47.87 ATOM 219 O GLY A 457 43.692 39.786 -17.914 1.00 54.38 ATOM 220 N VAL A 458 41.562 39.175 -18.248 1.00 24.13 ATOM 221 CA VAL A 458 41.380 38.792 -16.865 1.00 33.25 ATOM 222 C VAL A 458 40.559 37.516 -16.879 1.00 41.47 ATOM 223 O VAL A 458 39.388 37.517 -17.252 1.00 44.28 ATOM 224 CB VAL A 458 40.705 39.939 -16.021 1.00 32.84 ATOM 225 CG1 VAL A 458 40.715 41.228 -16.807 1.00 40.07 ATOM 226 CG2 VAL A 458 39.299 39.573 -15.592 1.00 16.70 ATOM 227 N PRO A 459 41.196 36.390 -16.522 1.00 51.12 ATOM 228 CA PRO A 459 40.591 35.056 -16.471 1.00 48.88 ATOM 229 C PRO A 459 39.476 34.990 -15.444 1.00 53.09 ATOM 230 O PRO A 459 39.588 35.574 -14.364 1.00 50.47 ATOM 231 CB PRO A 459 41.769 34.163 -16.095 1.00 76.02 ATOM 232 CG PRO A 459 42.952 34.897 -16.676 1.00 76.90 ATOM 233 CD PRO A 459 42.649 36.311 -16.292 1.00 54.85 ATOM 234 N THR A 460 38.403 34.278 -15.773 1.00 48.42 ATOM 235 CA THR A 460 37.283 34.166 -14.846 1.00 52.64 ATOM 236 C THR A 460 37.538 33.090 -13.810 1.00 43.53 ATOM 237 O THR A 460 36.912 33.073 -12.751 1.00 42.85 ATOM 238 CB THR A 460 35.974 33.820 -15.566 1.00 54.74 ATOM 239 OG1 THR A 460 34.889 33.876 -14.628 1.00 71.53 ATOM 240 CG2 THR A 460 36.048 32.421 -16.148 1.00 55.10 ATOM 241 N GLY A 461 38.457 32.185 -14.127 1.00 49.27 ATOM 242 CA GLY A 461 38.774 31.108 -13.209 1.00 71.94 ATOM 243 C GLY A 461 37.823 29.934 -13.349 1.00 69.09 ATOM 244 O GLY A 461 37.878 28.975 -12.579 1.00 70.19 ATOM 245 N ILE A 462 36.934 30.006 -14.330 1.00 67.67 ATOM 246 CA ILE A 462 35.995 28.924 -14.544 1.00 63.94 ATOM 247 C ILE A 462 36.344 28.232 -15.857 1.00 76.44 ATOM 248 O ILE A 462 36.551 28.881 -16.886 1.00 52.73 ATOM 249 CB ILE A 462 34.538 29.434 -14.621 1.00 67.35 ATOM 250 CG1 ILE A 462 34.321 30.589 -13.638 1.00 52.63 ATOM 251 CG2 ILE A 462 33.580 28.301 -14.286 1.00 57.03 ATOM 252 CD1 ILE A 462 34.613 30.251 -12.191 1.00 82.98 ATOM 253 N ARG A 463 36.438 26.909 -15.807 1.00 84.74 ATOM 254 CA ARG A 463 36.734 26.126 -16.995 1.00 74.11 ATOM 255 C ARG A 463 35.488 25.326 -17.315 1.00 79.44 ATOM 256 O ARG A 463 34.721 24.983 -16.411 1.00 75.48 ATOM 257 CB ARG A 463 37.900 25.178 -16.742 1.00 71.33 ATOM 258 CG ARG A 463 39.205 25.872 -16.461 1.00 91.30 ATOM 259 CD ARG A 463 40.255 24.853 -16.103 1.00103.42 ATOM 260 NE ARG A 463 39.869 24.114 -14.909 1.00 90.54 ATOM 261 CZ ARG A 463 40.530 23.065 -14.438 1.00 96.85 ATOM 262 NH1 ARG A 463 40.106 22.453 -13.337 1.00 90.55 ATOM 263 NH2 ARG A 463 41.609 22.627 -15.074 1.00 88.52 TER