HEADER OXIDOREDUCTASE 30-MAR-07 2EQ7 TITLE Crystal structure of lipoamide dehydrogenase from thermus TITLE 2 thermophilus HB8 with psbdo COMPND MOL_ID: 2; COMPND 2 MOLECULE: 2-oxoglutarate dehydrogenase E2 component; COMPND 3 CHAIN: C; COMPND 4 EC: 2.3.1.61; COMPND 5 FRAGMENT: peripheral subunit binding ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.80 ANGSTORMS DBREF 2EQ7 C 130 169 UNP Q5SLK5 Q5SLK5_THET 101 140 SEQRES 1 C 37 LEU ALA MET PRO ALA ALA GLU ARG LEU MET GLN GLU LYS SEQRES 2 C 37 GLY VAL SER PRO ALA GLU VAL GLN GLY THR GLY LEU GLY SEQRES 3 C 37 GLY ARG ILE LEU LYS GLU ASP VAL MET ARG HIS ATOM 1 N LEU C 130 27.109 22.387 53.923 1.00 53.68 ATOM 2 CA LEU C 130 26.217 21.582 54.807 1.00 53.72 ATOM 3 C LEU C 130 24.760 21.665 54.368 1.00 53.57 ATOM 4 O LEU C 130 24.104 20.642 54.168 1.00 54.39 ATOM 5 CB LEU C 130 26.334 22.066 56.256 1.00 54.13 ATOM 6 CG LEU C 130 25.332 21.481 57.258 1.00 53.70 ATOM 7 CD1 LEU C 130 25.461 19.970 57.289 1.00 54.03 ATOM 8 CD2 LEU C 130 25.576 22.069 58.637 1.00 53.73 ATOM 9 N ALA C 131 24.260 22.888 54.221 1.00 52.62 ATOM 10 CA ALA C 131 22.877 23.105 53.818 1.00 51.65 ATOM 11 C ALA C 131 22.769 23.567 52.370 1.00 51.05 ATOM 12 O ALA C 131 23.773 23.681 51.662 1.00 50.44 ATOM 13 CB ALA C 131 22.225 24.132 54.739 1.00 50.87 ATOM 14 N MET C 132 21.540 23.824 51.936 1.00 49.31 ATOM 15 CA MET C 132 21.289 24.287 50.579 1.00 49.33 ATOM 16 C MET C 132 21.551 25.790 50.516 1.00 49.38 ATOM 17 O MET C 132 21.286 26.515 51.476 1.00 49.63 ATOM 18 CB MET C 132 19.842 23.989 50.176 1.00 48.04 ATOM 19 CG MET C 132 19.500 22.512 50.108 1.00 46.74 ATOM 20 SD MET C 132 20.510 21.645 48.896 1.00 46.20 ATOM 21 CE MET C 132 19.518 21.856 47.403 1.00 45.60 ATOM 22 N PRO C 133 22.080 26.274 49.382 1.00 49.14 ATOM 23 CA PRO C 133 22.397 27.688 49.157 1.00 49.22 ATOM 24 C PRO C 133 21.325 28.697 49.578 1.00 49.26 ATOM 25 O PRO C 133 21.647 29.752 50.126 1.00 49.37 ATOM 26 CB PRO C 133 22.687 27.730 47.661 1.00 49.24 ATOM 27 CG PRO C 133 23.356 26.413 47.439 1.00 48.96 ATOM 28 CD PRO C 133 22.458 25.465 48.208 1.00 48.58 ATOM 29 N ALA C 134 20.058 28.386 49.319 1.00 49.21 ATOM 30 CA ALA C 134 18.973 29.291 49.688 1.00 50.05 ATOM 31 C ALA C 134 18.742 29.273 51.196 1.00 50.82 ATOM 32 O ALA C 134 18.302 30.265 51.779 1.00 50.17 ATOM 33 CB ALA C 134 17.688 28.908 48.957 1.00 49.67 ATOM 34 N ALA C 135 19.038 28.139 51.822 1.00 51.98 ATOM 35 CA ALA C 135 18.872 27.994 53.262 1.00 53.92 ATOM 36 C ALA C 135 19.893 28.874 53.971 1.00 54.84 ATOM 37 O ALA C 135 19.577 29.542 54.956 1.00 54.58 ATOM 38 CB ALA C 135 19.065 26.539 53.667 1.00 53.75 ATOM 39 N GLU C 136 21.119 28.868 53.457 1.00 56.00 ATOM 40 CA GLU C 136 22.195 29.667 54.024 1.00 57.42 ATOM 41 C GLU C 136 21.874 31.150 53.877 1.00 57.65 ATOM 42 O GLU C 136 22.209 31.958 54.744 1.00 57.71 ATOM 43 CB GLU C 136 23.514 29.349 53.317 1.00 58.69 ATOM 44 CG GLU C 136 23.980 27.912 53.496 1.00 60.84 ATOM 45 CD GLU C 136 25.265 27.616 52.748 1.00 62.37 ATOM 46 OE1 GLU C 136 25.796 26.495 52.897 1.00 63.66 ATOM 47 OE2 GLU C 136 25.744 28.504 52.009 1.00 63.49 ATOM 48 N ARG C 137 21.220 31.498 52.773 1.00 57.65 ATOM 49 CA ARG C 137 20.843 32.880 52.505 1.00 57.95 ATOM 50 C ARG C 137 19.774 33.321 53.501 1.00 58.77 ATOM 51 O ARG C 137 19.796 34.451 53.992 1.00 58.23 ATOM 52 CB ARG C 137 20.318 33.008 51.068 1.00 57.33 ATOM 53 CG ARG C 137 19.956 34.427 50.631 1.00 57.26 ATOM 54 CD ARG C 137 18.606 34.874 51.179 1.00 57.17 ATOM 55 NE ARG C 137 17.509 34.047 50.680 1.00 56.46 ATOM 56 CZ ARG C 137 16.232 34.214 51.014 1.00 56.56 ATOM 57 NH1 ARG C 137 15.884 35.181 51.852 1.00 56.31 ATOM 58 NH2 ARG C 137 15.301 33.416 50.510 1.00 55.52 ATOM 59 N LEU C 138 18.844 32.419 53.799 1.00 59.32 ATOM 60 CA LEU C 138 17.766 32.712 54.736 1.00 60.33 ATOM 61 C LEU C 138 18.285 32.803 56.168 1.00 61.07 ATOM 62 O LEU C 138 17.810 33.620 56.957 1.00 60.97 ATOM 63 CB LEU C 138 16.683 31.632 54.647 1.00 60.00 ATOM 64 CG LEU C 138 15.443 31.829 55.525 1.00 60.17 ATOM 65 CD1 LEU C 138 14.748 33.130 55.152 1.00 59.41 ATOM 66 CD2 LEU C 138 14.497 30.650 55.346 1.00 59.91 ATOM 67 N MET C 139 19.259 31.961 56.500 1.00 62.14 ATOM 68 CA MET C 139 19.835 31.953 57.841 1.00 63.39 ATOM 69 C MET C 139 20.680 33.195 58.104 1.00 64.56 ATOM 70 O MET C 139 20.656 33.746 59.204 1.00 64.69 ATOM 71 CB MET C 139 20.692 30.701 58.051 1.00 62.89 ATOM 72 CG MET C 139 19.906 29.399 58.079 1.00 62.43 ATOM 73 SD MET C 139 20.936 27.976 58.496 1.00 62.12 ATOM 74 CE MET C 139 21.544 27.508 56.873 1.00 61.95 ATOM 75 N GLN C 140 21.425 33.633 57.094 1.00 65.93 ATOM 76 CA GLN C 140 22.274 34.809 57.238 1.00 67.66 ATOM 77 C GLN C 140 21.463 36.082 57.447 1.00 68.53 ATOM 78 O GLN C 140 21.938 37.028 58.075 1.00 68.81 ATOM 79 CB GLN C 140 23.183 34.964 56.015 1.00 67.94 ATOM 80 CG GLN C 140 24.246 33.880 55.904 1.00 69.06 ATOM 81 CD GLN C 140 25.215 34.116 54.760 1.00 69.75 ATOM 82 OE1 GLN C 140 26.153 33.344 54.558 1.00 70.41 ATOM 83 NE2 GLN C 140 24.993 35.185 54.005 1.00 69.99 ATOM 84 N GLU C 141 20.241 36.105 56.924 1.00 69.55 ATOM 85 CA GLU C 141 19.379 37.272 57.074 1.00 70.96 ATOM 86 C GLU C 141 18.727 37.294 58.452 1.00 71.54 ATOM 87 O GLU C 141 18.747 38.314 59.141 1.00 71.62 ATOM 88 CB GLU C 141 18.292 37.284 55.998 1.00 71.46 ATOM 89 CG GLU C 141 18.822 37.344 54.581 1.00 72.30 ATOM 90 CD GLU C 141 17.732 37.613 53.563 1.00 72.97 ATOM 91 OE1 GLU C 141 16.740 36.856 53.542 1.00 73.58 ATOM 92 OE2 GLU C 141 17.870 38.580 52.784 1.00 73.27 ATOM 93 N LYS C 142 18.147 36.164 58.848 1.00 72.22 ATOM 94 CA LYS C 142 17.489 36.059 60.146 1.00 72.97 ATOM 95 C LYS C 142 18.499 35.771 61.252 1.00 73.29 ATOM 96 O LYS C 142 18.123 35.546 62.403 1.00 73.48 ATOM 97 CB LYS C 142 16.431 34.952 60.119 1.00 72.96 ATOM 98 CG LYS C 142 15.330 35.164 59.090 1.00 73.49 ATOM 99 CD LYS C 142 14.247 34.101 59.208 1.00 74.04 ATOM 100 CE LYS C 142 14.804 32.701 58.988 1.00 74.66 ATOM 101 NZ LYS C 142 13.760 31.651 59.153 1.00 74.75 ATOM 102 N GLY C 143 19.780 35.778 60.896 1.00 73.41 ATOM 103 CA GLY C 143 20.823 35.517 61.871 1.00 73.48 ATOM 104 C GLY C 143 20.654 34.179 62.564 1.00 73.67 ATOM 105 O GLY C 143 20.952 34.043 63.751 1.00 73.83 ATOM 106 N VAL C 144 20.172 33.188 61.820 1.00 73.60 ATOM 107 CA VAL C 144 19.962 31.853 62.366 1.00 73.35 ATOM 108 C VAL C 144 21.210 30.995 62.193 1.00 73.26 ATOM 109 O VAL C 144 21.848 31.012 61.140 1.00 73.13 ATOM 110 CB VAL C 144 18.777 31.148 61.672 1.00 73.26 ATOM 111 CG1 VAL C 144 18.547 29.781 62.297 1.00 73.34 ATOM 112 CG2 VAL C 144 17.527 32.002 61.785 1.00 73.06 ATOM 113 N SER C 145 21.554 30.246 63.236 1.00 73.16 ATOM 114 CA SER C 145 22.725 29.378 63.204 1.00 73.13 ATOM 115 C SER C 145 22.373 28.033 62.577 1.00 73.08 ATOM 116 O SER C 145 21.319 27.462 62.862 1.00 73.20 ATOM 117 CB SER C 145 23.258 29.162 64.622 1.00 73.25 ATOM 118 OG SER C 145 24.394 28.314 64.618 1.00 73.65 ATOM 119 N PRO C 146 23.254 27.508 61.711 1.00 72.86 ATOM 120 CA PRO C 146 23.017 26.221 61.052 1.00 72.67 ATOM 121 C PRO C 146 22.940 25.064 62.045 1.00 72.58 ATOM 122 O PRO C 146 22.244 24.076 61.810 1.00 72.46 ATOM 123 CB PRO C 146 24.205 26.101 60.101 1.00 72.64 ATOM 124 CG PRO C 146 25.290 26.820 60.839 1.00 72.71 ATOM 125 CD PRO C 146 24.572 28.050 61.338 1.00 72.73 ATOM 126 N ALA C 147 23.657 25.198 63.156 1.00 72.46 ATOM 127 CA ALA C 147 23.670 24.168 64.189 1.00 72.38 ATOM 128 C ALA C 147 22.375 24.209 64.995 1.00 72.26 ATOM 129 O ALA C 147 22.238 23.521 66.006 1.00 72.34 ATOM 130 CB ALA C 147 24.867 24.370 65.112 1.00 72.42 ATOM 131 N GLU C 148 21.427 25.019 64.535 1.00 71.89 ATOM 132 CA GLU C 148 20.141 25.161 65.204 1.00 71.49 ATOM 133 C GLU C 148 19.022 24.492 64.411 1.00 70.78 ATOM 134 O GLU C 148 18.072 23.961 64.988 1.00 70.69 ATOM 135 CB GLU C 148 19.812 26.644 65.392 1.00 72.08 ATOM 136 CG GLU C 148 18.448 26.905 66.007 1.00 73.20 ATOM 137 CD GLU C 148 18.090 28.377 66.021 1.00 74.20 ATOM 138 OE1 GLU C 148 18.834 29.166 66.642 1.00 74.79 ATOM 139 OE2 GLU C 148 17.064 28.745 65.409 1.00 74.26 ATOM 140 N VAL C 149 19.141 24.522 63.088 1.00 69.72 ATOM 141 CA VAL C 149 18.135 23.929 62.214 1.00 68.62 ATOM 142 C VAL C 149 18.431 22.465 61.906 1.00 67.74 ATOM 143 O VAL C 149 19.583 22.083 61.696 1.00 67.61 ATOM 144 CB VAL C 149 18.039 24.701 60.880 1.00 68.61 ATOM 145 CG1 VAL C 149 16.909 24.138 60.034 1.00 68.34 ATOM 146 CG2 VAL C 149 17.819 26.182 61.150 1.00 68.80 ATOM 147 N GLN C 150 17.381 21.650 61.881 1.00 66.71 ATOM 148 CA GLN C 150 17.516 20.228 61.591 1.00 66.07 ATOM 149 C GLN C 150 17.275 19.992 60.102 1.00 64.76 ATOM 150 O GLN C 150 16.172 20.206 59.601 1.00 64.44 ATOM 151 CB GLN C 150 16.509 19.423 62.419 1.00 66.64 ATOM 152 CG GLN C 150 16.631 17.915 62.258 1.00 68.02 ATOM 153 CD GLN C 150 15.653 17.150 63.134 1.00 69.05 ATOM 154 OE1 GLN C 150 15.633 15.918 63.132 1.00 69.23 ATOM 155 NE2 GLN C 150 14.837 17.879 63.888 1.00 69.64 ATOM 156 N GLY C 151 18.315 19.551 59.401 1.00 63.62 ATOM 157 CA GLY C 151 18.199 19.308 57.975 1.00 61.97 ATOM 158 C GLY C 151 17.364 18.097 57.608 1.00 60.95 ATOM 159 O GLY C 151 17.553 17.010 58.155 1.00 60.71 ATOM 160 N THR C 152 16.435 18.289 56.676 1.00 59.89 ATOM 161 CA THR C 152 15.568 17.209 56.218 1.00 58.96 ATOM 162 C THR C 152 15.797 16.965 54.730 1.00 58.60 ATOM 163 O THR C 152 15.080 16.188 54.098 1.00 57.77 ATOM 164 CB THR C 152 14.075 17.541 56.444 1.00 58.85 ATOM 165 OG1 THR C 152 13.708 18.681 55.656 1.00 58.15 ATOM 166 CG2 THR C 152 13.812 17.837 57.914 1.00 58.27 ATOM 167 N GLY C 153 16.800 17.639 54.177 1.00 58.22 ATOM 168 CA GLY C 153 17.112 17.477 52.770 1.00 58.42 ATOM 169 C GLY C 153 17.874 16.189 52.530 1.00 58.54 ATOM 170 O GLY C 153 18.126 15.431 53.469 1.00 58.24 ATOM 171 N LEU C 154 18.243 15.938 51.277 1.00 58.09 ATOM 172 CA LEU C 154 18.979 14.728 50.931 1.00 57.94 ATOM 173 C LEU C 154 20.246 14.661 51.776 1.00 57.95 ATOM 174 O LEU C 154 21.109 15.533 51.686 1.00 57.06 ATOM 175 CB LEU C 154 19.341 14.732 49.442 1.00 57.78 ATOM 176 CG LEU C 154 19.669 13.376 48.806 1.00 57.47 ATOM 177 CD1 LEU C 154 19.954 13.566 47.330 1.00 57.33 ATOM 178 CD2 LEU C 154 20.857 12.742 49.497 1.00 56.91 ATOM 179 N GLY C 155 20.352 13.619 52.593 1.00 58.86 ATOM 180 CA GLY C 155 21.513 13.472 53.450 1.00 59.49 ATOM 181 C GLY C 155 21.505 14.542 54.524 1.00 59.86 ATOM 182 O GLY C 155 20.445 14.906 55.036 1.00 59.73 ATOM 183 N GLY C 156 22.684 15.051 54.865 1.00 60.46 ATOM 184 CA GLY C 156 22.772 16.087 55.878 1.00 60.61 ATOM 185 C GLY C 156 22.745 17.472 55.259 1.00 60.68 ATOM 186 O GLY C 156 23.773 18.145 55.185 1.00 61.37 ATOM 187 N ARG C 157 21.568 17.899 54.810 1.00 60.31 ATOM 188 CA ARG C 157 21.413 19.212 54.191 1.00 59.95 ATOM 189 C ARG C 157 20.172 19.923 54.714 1.00 59.73 ATOM 190 O ARG C 157 19.084 19.347 54.758 1.00 59.55 ATOM 191 CB ARG C 157 21.310 19.074 52.671 1.00 59.94 ATOM 192 CG ARG C 157 22.498 18.386 52.027 1.00 60.95 ATOM 193 CD ARG C 157 22.268 18.175 50.541 1.00 61.93 ATOM 194 NE ARG C 157 23.370 17.446 49.920 1.00 62.65 ATOM 195 CZ ARG C 157 23.411 17.105 48.637 1.00 63.57 ATOM 196 NH1 ARG C 157 24.456 16.442 48.160 1.00 64.03 ATOM 197 NH2 ARG C 157 22.408 17.426 47.829 1.00 62.85 ATOM 198 N ILE C 158 20.342 21.181 55.105 1.00 59.50 ATOM 199 CA ILE C 158 19.236 21.977 55.619 1.00 59.31 ATOM 200 C ILE C 158 18.551 22.728 54.482 1.00 59.01 ATOM 201 O ILE C 158 19.174 23.543 53.802 1.00 59.06 ATOM 202 CB ILE C 158 19.723 23.005 56.667 1.00 59.44 ATOM 203 CG1 ILE C 158 20.316 22.277 57.876 1.00 59.61 ATOM 204 CG2 ILE C 158 18.570 23.898 57.098 1.00 59.61 ATOM 205 CD1 ILE C 158 20.866 23.203 58.944 1.00 60.08 ATOM 206 N LEU C 159 17.270 22.442 54.278 1.00 58.68 ATOM 207 CA LEU C 159 16.497 23.099 53.231 1.00 58.82 ATOM 208 C LEU C 159 16.006 24.441 53.763 1.00 59.01 ATOM 209 O LEU C 159 15.848 24.612 54.972 1.00 58.80 ATOM 210 CB LEU C 159 15.301 22.231 52.830 1.00 58.61 ATOM 211 CG LEU C 159 15.611 20.811 52.347 1.00 58.66 ATOM 212 CD1 LEU C 159 14.311 20.071 52.077 1.00 58.08 ATOM 213 CD2 LEU C 159 16.467 20.863 51.090 1.00 58.60 ATOM 214 N LYS C 160 15.767 25.390 52.865 1.00 59.39 ATOM 215 CA LYS C 160 15.298 26.710 53.272 1.00 60.00 ATOM 216 C LYS C 160 13.975 26.611 54.024 1.00 60.73 ATOM 217 O LYS C 160 13.623 27.503 54.797 1.00 61.04 ATOM 218 CB LYS C 160 15.134 27.619 52.050 1.00 59.30 ATOM 219 CG LYS C 160 14.121 27.121 51.040 1.00 58.62 ATOM 220 CD LYS C 160 14.053 28.029 49.822 1.00 57.53 ATOM 221 CE LYS C 160 13.534 29.413 50.162 1.00 56.61 ATOM 222 NZ LYS C 160 13.358 30.229 48.929 1.00 53.52 ATOM 223 N GLU C 161 13.245 25.523 53.796 1.00 61.53 ATOM 224 CA GLU C 161 11.968 25.318 54.466 1.00 62.46 ATOM 225 C GLU C 161 12.205 24.861 55.902 1.00 62.87 ATOM 226 O GLU C 161 11.331 24.995 56.759 1.00 62.67 ATOM 227 CB GLU C 161 11.130 24.279 53.716 1.00 62.89 ATOM 228 CG GLU C 161 11.713 22.878 53.720 1.00 63.55 ATOM 229 CD GLU C 161 10.876 21.898 52.919 1.00 64.10 ATOM 230 OE1 GLU C 161 11.199 20.693 52.933 1.00 64.61 ATOM 231 OE2 GLU C 161 9.898 22.332 52.273 1.00 64.28 ATOM 232 N ASP C 162 13.393 24.320 56.157 1.00 63.39 ATOM 233 CA ASP C 162 13.751 23.859 57.494 1.00 64.24 ATOM 234 C ASP C 162 14.078 25.062 58.372 1.00 64.91 ATOM 235 O ASP C 162 13.798 25.064 59.571 1.00 64.80 ATOM 236 CB ASP C 162 14.964 22.925 57.436 1.00 63.93 ATOM 237 CG ASP C 162 14.665 21.622 56.722 1.00 64.09 ATOM 238 OD1 ASP C 162 13.723 20.915 57.140 1.00 63.64 ATOM 239 OD2 ASP C 162 15.375 21.300 55.746 1.00 63.90 ATOM 240 N VAL C 163 14.673 26.082 57.760 1.00 65.60 ATOM 241 CA VAL C 163 15.042 27.300 58.470 1.00 66.58 ATOM 242 C VAL C 163 13.790 28.071 58.874 1.00 67.51 ATOM 243 O VAL C 163 13.620 28.430 60.039 1.00 67.40 ATOM 244 CB VAL C 163 15.925 28.212 57.591 1.00 66.30 ATOM 245 CG1 VAL C 163 16.330 29.454 58.371 1.00 66.22 ATOM 246 CG2 VAL C 163 17.156 27.450 57.125 1.00 66.21 ATOM 247 N MET C 164 12.916 28.322 57.904 1.00 68.63 ATOM 248 CA MET C 164 11.679 29.046 58.167 1.00 69.76 ATOM 249 C MET C 164 10.789 28.234 59.100 1.00 70.48 ATOM 250 O MET C 164 9.780 28.729 59.603 1.00 70.95 ATOM 251 CB MET C 164 10.941 29.336 56.857 1.00 69.84 ATOM 252 CG MET C 164 10.590 28.102 56.041 1.00 70.07 ATOM 253 SD MET C 164 9.726 28.512 54.507 1.00 69.95 ATOM 254 CE MET C 164 8.018 28.351 55.028 1.00 70.16 ATOM 255 N ARG C 165 11.174 26.982 59.326 1.00 71.18 ATOM 256 CA ARG C 165 10.428 26.091 60.206 1.00 71.90 ATOM 257 C ARG C 165 10.776 26.407 61.657 1.00 72.28 ATOM 258 O ARG C 165 9.963 26.208 62.560 1.00 72.38 ATOM 259 CB ARG C 165 10.780 24.634 59.898 1.00 71.85 ATOM 260 CG ARG C 165 10.048 23.617 60.755 1.00 72.03 ATOM 261 CD ARG C 165 10.561 22.216 60.477 1.00 72.35 ATOM 262 NE ARG C 165 11.983 22.095 60.788 1.00 72.45 ATOM 263 CZ ARG C 165 12.719 21.021 60.524 1.00 72.16 ATOM 264 NH1 ARG C 165 12.171 19.966 59.937 1.00 72.34 ATOM 265 NH2 ARG C 165 14.003 21.001 60.849 1.00 71.90 ATOM 266 N HIS C 166 11.992 26.900 61.868 1.00 72.63 ATOM 267 CA HIS C 166 12.458 27.253 63.203 1.00 73.14 ATOM 268 C HIS C 166 12.277 28.747 63.449 1.00 73.34 ATOM 269 O HIS C 166 11.540 29.100 64.393 1.00 73.65 ATOM 270 CB HIS C 166 13.925 26.869 63.360 1.00 73.30 TER