HEADER IMMUNE SYSTEM/APOPTOSIS 09-JUN-06 2H9G TITLE Crystal structure of phage derived Fab BdF1 with human Death Receptor TITLE 2 5 (DR5) COMPND MOL_ID: 3; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 10B COMPND 3 precursor; COMPND 4 CHAIN: R, S; COMPND 5 extra cellular ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.32 ANGSTORMS DBREF 2H9G R 1 130 UNP O14763 TR10B_HUMAN 54 183 SEQRES 1 R 27 LYS CYS ARG THR GLY CYS PRO ARG GLY MET VAL LYS VAL SEQRES 2 R 27 GLY ASP CYS THR PRO TRP SER ASP ILE GLU CYS VAL HIS SEQRES 3 R 27 LYS ATOM 1 N LYS R 102 -17.848 -29.322 17.185 1.00 16.23 ATOM 2 CA LYS R 102 -17.775 -30.608 16.474 1.00 15.73 ATOM 3 C LYS R 102 -19.153 -31.197 16.146 1.00 14.55 ATOM 4 O LYS R 102 -20.076 -31.137 16.964 1.00 14.97 ATOM 5 CB LYS R 102 -16.981 -31.627 17.302 1.00 16.68 ATOM 6 CG LYS R 102 -16.699 -32.964 17.036 0.00 18.50 ATOM 7 CD LYS R 102 -15.684 -32.810 15.923 0.00 18.36 ATOM 8 CE LYS R 102 -15.226 -34.169 15.424 0.00 18.68 ATOM 9 NZ LYS R 102 -14.231 -34.071 14.334 0.00 19.15 ATOM 10 N CYS R 103 -19.272 -31.768 14.946 1.00 12.24 ATOM 11 CA CYS R 103 -20.475 -32.505 14.535 1.00 11.60 ATOM 12 C CYS R 103 -20.570 -33.848 15.254 1.00 8.91 ATOM 13 O CYS R 103 -19.565 -34.535 15.415 1.00 10.49 ATOM 14 CB CYS R 103 -20.459 -32.777 13.023 1.00 13.92 ATOM 15 SG CYS R 103 -21.125 -31.460 11.985 1.00 17.67 ATOM 16 N ARG R 104 -21.774 -34.228 15.673 1.00 5.80 ATOM 17 CA ARG R 104 -22.012 -35.591 16.146 1.00 5.32 ATOM 18 C ARG R 104 -21.834 -36.539 14.961 1.00 5.46 ATOM 19 O ARG R 104 -22.113 -36.165 13.810 1.00 3.82 ATOM 20 CB ARG R 104 -23.424 -35.748 16.726 1.00 3.75 ATOM 21 CG ARG R 104 -23.710 -34.884 17.953 1.00 2.90 ATOM 22 CD ARG R 104 -25.006 -34.096 17.791 1.00 3.90 ATOM 23 NE ARG R 104 -26.196 -34.858 18.161 1.00 4.39 ATOM 24 CZ ARG R 104 -27.416 -34.693 17.640 1.00 4.23 ATOM 25 NH1 ARG R 104 -27.654 -33.797 16.681 1.00 2.00 ATOM 26 NH2 ARG R 104 -28.416 -35.455 18.076 1.00 4.58 ATOM 27 N THR R 105 -21.359 -37.753 15.243 1.00 4.54 ATOM 28 CA THR R 105 -21.116 -38.758 14.203 1.00 3.70 ATOM 29 C THR R 105 -22.279 -39.737 14.066 1.00 2.19 ATOM 30 O THR R 105 -22.502 -40.298 12.986 1.00 2.00 ATOM 31 CB THR R 105 -19.791 -39.504 14.445 1.00 3.32 ATOM 32 OG1 THR R 105 -19.639 -39.769 15.841 1.00 2.00 ATOM 33 CG2 THR R 105 -18.612 -38.647 13.966 1.00 3.70 ATOM 34 N GLY R 106 -23.023 -39.925 15.155 1.00 3.20 ATOM 35 CA GLY R 106 -24.244 -40.727 15.137 1.00 4.79 ATOM 36 C GLY R 106 -25.300 -40.192 16.092 1.00 4.91 ATOM 37 O GLY R 106 -24.986 -39.502 17.065 1.00 4.40 ATOM 38 N CYS R 107 -26.557 -40.517 15.811 1.00 6.40 ATOM 39 CA CYS R 107 -27.665 -40.119 16.673 1.00 8.90 ATOM 40 C CYS R 107 -27.640 -40.897 17.990 1.00 8.58 ATOM 41 O CYS R 107 -27.082 -41.995 18.045 1.00 5.23 ATOM 42 CB CYS R 107 -29.003 -40.358 15.975 1.00 10.71 ATOM 43 SG CYS R 107 -29.264 -39.335 14.525 1.00 17.63 ATOM 44 N PRO R 108 -28.257 -40.336 19.049 1.00 9.68 ATOM 45 CA PRO R 108 -28.343 -41.041 20.330 1.00 8.69 ATOM 46 C PRO R 108 -29.088 -42.372 20.237 1.00 8.78 ATOM 47 O PRO R 108 -29.681 -42.698 19.199 1.00 3.98 ATOM 48 CB PRO R 108 -29.111 -40.066 21.233 1.00 9.13 ATOM 49 CG PRO R 108 -29.020 -38.743 20.567 1.00 10.62 ATOM 50 CD PRO R 108 -28.898 -39.009 19.104 1.00 10.10 ATOM 51 N ARG R 109 -29.064 -43.115 21.339 1.00 9.95 ATOM 52 CA ARG R 109 -29.578 -44.477 21.374 1.00 9.98 ATOM 53 C ARG R 109 -31.107 -44.504 21.269 1.00 10.61 ATOM 54 O ARG R 109 -31.817 -44.202 22.234 1.00 12.58 ATOM 55 CB ARG R 109 -29.102 -45.186 22.647 1.00 10.57 ATOM 56 CG ARG R 109 -29.061 -46.679 22.494 1.00 12.02 ATOM 57 CD ARG R 109 -28.871 -47.416 23.801 1.00 11.77 ATOM 58 NE ARG R 109 -29.443 -48.759 23.716 1.00 12.63 ATOM 59 CZ ARG R 109 -30.749 -49.029 23.808 1.00 15.09 ATOM 60 NH1 ARG R 109 -31.631 -48.046 23.975 1.00 15.54 ATOM 61 NH2 ARG R 109 -31.194 -50.283 23.732 1.00 13.52 ATOM 62 N GLY R 110 -31.600 -44.869 20.085 1.00 9.13 ATOM 63 CA GLY R 110 -33.034 -44.908 19.802 1.00 9.75 ATOM 64 C GLY R 110 -33.510 -43.802 18.877 1.00 9.07 ATOM 65 O GLY R 110 -34.626 -43.303 19.024 1.00 7.46 ATOM 66 N MET R 111 -32.660 -43.420 17.925 1.00 12.11 ATOM 67 CA MET R 111 -32.985 -42.408 16.917 1.00 12.86 ATOM 68 C MET R 111 -32.271 -42.745 15.608 1.00 12.63 ATOM 69 O MET R 111 -31.369 -43.586 15.587 1.00 11.16 ATOM 70 CB MET R 111 -32.564 -41.010 17.386 1.00 13.39 ATOM 71 CG MET R 111 -33.266 -40.509 18.643 1.00 14.38 ATOM 72 SD MET R 111 -32.824 -38.812 19.062 1.00 16.76 ATOM 73 CE MET R 111 -33.843 -37.888 17.918 1.00 17.22 ATOM 74 N VAL R 112 -32.674 -42.077 14.526 1.00 13.48 ATOM 75 CA VAL R 112 -32.128 -42.335 13.187 1.00 13.99 ATOM 76 C VAL R 112 -31.673 -41.027 12.540 1.00 13.10 ATOM 77 O VAL R 112 -32.145 -39.949 12.901 1.00 10.56 ATOM 78 CB VAL R 112 -33.167 -43.067 12.277 1.00 14.01 ATOM 79 CG1 VAL R 112 -34.306 -42.131 11.866 1.00 13.78 ATOM 80 CG2 VAL R 112 -32.494 -43.689 11.049 1.00 13.29 ATOM 81 N LYS R 113 -30.744 -41.136 11.593 1.00 15.28 ATOM 82 CA LYS R 113 -30.210 -39.976 10.880 1.00 17.57 ATOM 83 C LYS R 113 -31.113 -39.588 9.709 1.00 18.48 ATOM 84 O LYS R 113 -31.509 -40.443 8.915 1.00 19.36 ATOM 85 CB LYS R 113 -28.805 -40.290 10.366 1.00 17.72 ATOM 86 CG LYS R 113 -28.009 -39.082 9.922 1.00 17.59 ATOM 87 CD LYS R 113 -26.625 -39.509 9.453 1.00 18.28 ATOM 88 CE LYS R 113 -25.567 -38.478 9.782 1.00 17.64 ATOM 89 NZ LYS R 113 -24.212 -39.088 9.759 1.00 17.66 ATOM 90 N VAL R 114 -31.433 -38.299 9.612 1.00 19.05 ATOM 91 CA VAL R 114 -32.252 -37.769 8.514 1.00 19.26 ATOM 92 C VAL R 114 -31.626 -36.494 7.930 1.00 19.97 ATOM 93 O VAL R 114 -32.330 -35.595 7.468 1.00 21.57 ATOM 94 CB VAL R 114 -33.721 -37.499 8.971 1.00 19.52 ATOM 95 CG1 VAL R 114 -34.419 -38.803 9.333 1.00 18.48 ATOM 96 CG2 VAL R 114 -33.773 -36.517 10.147 1.00 19.83 ATOM 97 N GLY R 115 -30.296 -36.437 7.936 1.00 19.27 ATOM 98 CA GLY R 115 -29.562 -35.245 7.512 1.00 18.02 ATOM 99 C GLY R 115 -28.101 -35.335 7.909 1.00 17.04 ATOM 100 O GLY R 115 -27.786 -35.629 9.064 1.00 16.30 ATOM 101 N ASP R 116 -27.208 -35.083 6.954 1.00 17.16 ATOM 102 CA ASP R 116 -25.769 -35.244 7.172 1.00 17.51 ATOM 103 C ASP R 116 -25.129 -33.942 7.662 1.00 16.83 ATOM 104 O ASP R 116 -25.734 -32.868 7.585 1.00 15.41 ATOM 105 CB ASP R 116 -25.086 -35.732 5.885 1.00 19.04 ATOM 106 CG ASP R 116 -23.968 -36.730 6.156 1.00 20.44 ATOM 107 OD1 ASP R 116 -22.971 -36.355 6.804 1.00 20.36 ATOM 108 OD2 ASP R 116 -24.087 -37.895 5.715 1.00 22.08 ATOM 109 N CYS R 117 -23.904 -34.054 8.174 1.00 17.31 ATOM 110 CA CYS R 117 -23.163 -32.901 8.691 1.00 15.00 ATOM 111 C CYS R 117 -22.410 -32.181 7.573 1.00 11.54 ATOM 112 O CYS R 117 -21.792 -32.820 6.723 1.00 11.06 ATOM 113 CB CYS R 117 -22.180 -33.330 9.789 1.00 16.53 ATOM 114 SG CYS R 117 -20.839 -32.140 10.084 1.00 20.63 ATOM 115 N THR R 118 -22.477 -30.851 7.595 1.00 8.08 ATOM 116 CA THR R 118 -21.718 -29.987 6.687 1.00 8.05 ATOM 117 C THR R 118 -21.034 -28.874 7.492 1.00 6.15 ATOM 118 O THR R 118 -21.215 -28.789 8.709 1.00 2.00 ATOM 119 CB THR R 118 -22.642 -29.331 5.613 1.00 4.40 ATOM 120 OG1 THR R 118 -23.695 -28.598 6.254 1.00 2.00 ATOM 121 CG2 THR R 118 -23.245 -30.380 4.693 1.00 4.18 ATOM 122 N PRO R 119 -20.210 -28.041 6.828 1.00 6.58 ATOM 123 CA PRO R 119 -19.876 -26.721 7.384 1.00 8.13 ATOM 124 C PRO R 119 -21.077 -25.902 7.900 1.00 7.44 ATOM 125 O PRO R 119 -20.909 -25.102 8.818 1.00 5.58 ATOM 126 CB PRO R 119 -19.210 -25.989 6.200 1.00 7.69 ATOM 127 CG PRO R 119 -19.255 -26.944 5.027 1.00 8.14 ATOM 128 CD PRO R 119 -19.463 -28.306 5.586 1.00 6.51 ATOM 129 N TRP R 120 -22.262 -26.102 7.315 1.00 9.60 ATOM 130 CA TRP R 120 -23.460 -25.317 7.652 1.00 9.83 ATOM 131 C TRP R 120 -24.204 -25.803 8.898 1.00 6.58 ATOM 132 O TRP R 120 -24.718 -24.985 9.659 1.00 2.00 ATOM 133 CB TRP R 120 -24.446 -25.282 6.473 1.00 15.91 ATOM 134 CG TRP R 120 -23.993 -24.478 5.284 1.00 16.90 ATOM 135 CD1 TRP R 120 -23.852 -23.116 5.212 1.00 17.77 ATOM 136 CD2 TRP R 120 -23.656 -24.984 3.986 1.00 17.52 ATOM 137 NE1 TRP R 120 -23.435 -22.746 3.952 1.00 17.70 ATOM 138 CE2 TRP R 120 -23.308 -23.873 3.180 1.00 18.75 ATOM 139 CE3 TRP R 120 -23.608 -26.268 3.426 1.00 17.32 ATOM 140 CZ2 TRP R 120 -22.912 -24.011 1.845 1.00 18.11 ATOM 141 CZ3 TRP R 120 -23.219 -26.404 2.099 1.00 17.08 ATOM 142 CH2 TRP R 120 -22.877 -25.281 1.324 1.00 17.78 ATOM 143 N SER R 121 -24.291 -27.118 9.102 1.00 8.20 ATOM 144 CA SER R 121 -25.038 -27.648 10.254 1.00 7.31 ATOM 145 C SER R 121 -24.544 -28.985 10.796 1.00 7.05 ATOM 146 O SER R 121 -23.678 -29.637 10.215 1.00 7.65 ATOM 147 CB SER R 121 -26.529 -27.769 9.912 1.00 7.80 ATOM 148 OG SER R 121 -26.795 -28.934 9.149 1.00 5.25 ATOM 149 N ASP R 122 -25.130 -29.369 11.929 1.00 6.42 ATOM 150 CA ASP R 122 -24.907 -30.665 12.563 1.00 3.94 ATOM 151 C ASP R 122 -25.701 -31.728 11.808 1.00 3.23 ATOM 152 O ASP R 122 -26.488 -31.413 10.907 1.00 2.00 ATOM 153 CB ASP R 122 -25.380 -30.608 14.031 1.00 2.64 ATOM 154 CG ASP R 122 -24.713 -31.654 14.934 1.00 3.16 ATOM 155 OD1 ASP R 122 -24.131 -32.641 14.440 1.00 2.00 ATOM 156 OD2 ASP R 122 -24.781 -31.481 16.167 1.00 3.51 ATOM 157 N ILE R 123 -25.481 -32.988 12.177 1.00 4.98 ATOM 158 CA ILE R 123 -26.357 -34.079 11.750 1.00 5.38 ATOM 159 C ILE R 123 -27.768 -33.865 12.322 1.00 6.22 ATOM 160 O ILE R 123 -27.935 -33.384 13.446 1.00 3.93 ATOM 161 CB ILE R 123 -25.809 -35.488 12.160 1.00 3.60 ATOM 162 CG1 ILE R 123 -25.716 -35.645 13.681 1.00 2.00 ATOM 163 CG2 ILE R 123 -24.446 -35.734 11.524 1.00 4.42 ATOM 164 CD1 ILE R 123 -25.530 -37.088 14.141 1.00 2.00 ATOM 165 N GLU R 124 -28.775 -34.210 11.528 1.00 9.29 ATOM 166 CA GLU R 124 -30.168 -34.082 11.931 1.00 10.20 ATOM 167 C GLU R 124 -30.650 -35.462 12.362 1.00 9.76 ATOM 168 O GLU R 124 -30.383 -36.451 11.679 1.00 8.24 ATOM 169 CB GLU R 124 -31.003 -33.556 10.756 1.00 10.26 ATOM 170 CG GLU R 124 -32.438 -33.171 11.100 1.00 10.50 ATOM 171 CD GLU R 124 -33.218 -32.656 9.891 1.00 12.66 ATOM 172 OE1 GLU R 124 -32.996 -33.158 8.766 1.00 14.03 ATOM 173 OE2 GLU R 124 -34.062 -31.749 10.066 1.00 12.41 ATOM 174 N CYS R 125 -31.348 -35.524 13.495 1.00 11.74 ATOM 175 CA CYS R 125 -31.899 -36.784 14.003 1.00 13.28 ATOM 176 C CYS R 125 -33.420 -36.727 14.173 1.00 14.26 ATOM 177 O CYS R 125 -34.036 -35.660 14.084 1.00 13.59 ATOM 178 CB CYS R 125 -31.243 -37.155 15.337 1.00 14.09 ATOM 179 SG CYS R 125 -29.451 -37.428 15.243 1.00 15.27 ATOM 180 N VAL R 126 -34.013 -37.895 14.403 1.00 15.51 ATOM 181 CA VAL R 126 -35.442 -38.013 14.693 1.00 15.19 ATOM 182 C VAL R 126 -35.714 -39.362 15.369 1.00 14.97 ATOM 183 O VAL R 126 -34.999 -40.337 15.129 1.00 15.39 ATOM 184 CB VAL R 126 -36.310 -37.844 13.407 1.00 16.94 ATOM 185 CG1 VAL R 126 -36.132 -39.031 12.453 1.00 18.13 ATOM 186 CG2 VAL R 126 -37.786 -37.651 13.762 1.00 16.93 ATOM 187 N HIS R 127 -36.747 -39.401 16.207 1.00 15.22 ATOM 188 CA HIS R 127 -37.092 -40.584 17.012 1.00 14.08 ATOM 189 C HIS R 127 -37.675 -41.735 16.177 1.00 13.48 ATOM 190 O HIS R 127 -37.699 -41.672 14.944 1.00 11.87 ATOM 191 CB HIS R 127 -38.090 -40.187 18.121 1.00 14.60 ATOM 192 CG HIS R 127 -37.505 -40.177 19.500 1.00 15.69 ATOM 193 ND1 HIS R 127 -37.050 -39.026 20.110 1.00 15.84 ATOM 194 CD2 HIS R 127 -37.320 -41.176 20.397 1.00 16.95 ATOM 195 CE1 HIS R 127 -36.597 -39.320 21.317 1.00 16.29 ATOM 196 NE2 HIS R 127 -36.751 -40.618 21.516 1.00 17.03 ATOM 197 N LYS R 128 -38.124 -42.788 16.869 1.00 14.01 ATOM 198 CA LYS R 128 -38.887 -43.891 16.270 1.00 11.47 ATOM 199 C LYS R 128 -40.133 -44.193 17.104 1.00 8.65 ATOM 200 O LYS R 128 -41.251 -43.833 16.732 1.00 5.25 ATOM 201 CB LYS R 128 -38.024 -45.150 16.180 1.00 10.92 ATOM 202 CG LYS R 128 -36.726 -44.969 15.406 1.00 10.70 ATOM 203 CD LYS R 128 -35.852 -46.208 15.506 1.00 10.89 ATOM 204 CE LYS R 128 -34.465 -45.957 14.943 1.00 10.61 ATOM 205 NZ LYS R 128 -33.624 -47.170 15.044 1.00 9.37 TER