HEADER DNA BINDING PROTEIN 31-JUL-07 2QSF TITLE Crystal structure of the Rad4-Rad23 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA repair protein RAD4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.35 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 417 REMARK 465 VAL A 418 REMARK 465 GLY A 419 REMARK 465 ARG A 420 REMARK 465 PRO A 421 REMARK 465 LYS A 422 REMARK 465 GLY A 423 REMARK 465 GLU A 424 REMARK 465 ALA A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 GLU A 428 DBREF 2QSF A 101 632 UNP P14736 RAD4_YEAST 101 632 SEQRES 1 A 43 LEU LYS SER ALA ARG GLN TRP TYR MET ASN GLY ARG ILE SEQRES 2 A 43 LEU LYS THR GLY SER ARG CYS LYS LYS VAL ILE LYS ARG SEQRES 3 A 43 THR VAL GLY ARG PRO LYS GLY GLU ALA GLU GLU GLU ASP SEQRES 4 A 43 GLU ARG LEU TYR ATOM 1 N LEU A 490 56.263 22.261 47.170 1.00 64.56 ATOM 2 CA LEU A 490 56.534 20.881 47.528 1.00 64.00 ATOM 3 C LEU A 490 55.186 20.204 47.705 1.00 67.19 ATOM 4 O LEU A 490 54.206 20.853 48.075 1.00 72.73 ATOM 5 CB LEU A 490 57.330 20.810 48.834 1.00 60.99 ATOM 6 CG LEU A 490 58.669 21.549 48.860 1.00 60.77 ATOM 7 CD1 LEU A 490 59.320 21.365 50.217 1.00 65.06 ATOM 8 CD2 LEU A 490 59.578 21.024 47.765 1.00 59.71 ATOM 9 N LYS A 491 55.130 18.907 47.431 1.00 64.79 ATOM 10 CA LYS A 491 53.884 18.169 47.566 1.00 61.58 ATOM 11 C LYS A 491 54.146 16.786 48.127 1.00 58.47 ATOM 12 O LYS A 491 55.215 16.220 47.925 1.00 60.81 ATOM 13 CB LYS A 491 53.194 18.056 46.206 1.00 58.68 ATOM 14 CG LYS A 491 52.935 19.398 45.562 1.00 62.37 ATOM 15 CD LYS A 491 52.308 19.273 44.193 1.00 63.17 ATOM 16 CE LYS A 491 52.053 20.655 43.613 1.00 69.18 ATOM 17 NZ LYS A 491 51.375 20.610 42.291 1.00 79.95 ATOM 18 N SER A 492 53.166 16.255 48.846 1.00 59.35 ATOM 19 CA SER A 492 53.287 14.926 49.413 1.00 57.30 ATOM 20 C SER A 492 53.237 13.945 48.248 1.00 58.62 ATOM 21 O SER A 492 52.979 14.337 47.106 1.00 54.56 ATOM 22 CB SER A 492 52.134 14.648 50.379 1.00 52.42 ATOM 23 OG SER A 492 50.888 14.728 49.717 1.00 55.97 ATOM 24 N ALA A 493 53.489 12.674 48.532 1.00 57.75 ATOM 25 CA ALA A 493 53.467 11.666 47.488 1.00 54.82 ATOM 26 C ALA A 493 52.072 11.613 46.859 1.00 52.42 ATOM 27 O ALA A 493 51.935 11.462 45.645 1.00 46.74 ATOM 28 CB ALA A 493 53.849 10.313 48.070 1.00 53.26 ATOM 29 N ARG A 494 51.038 11.753 47.684 1.00 50.06 ATOM 30 CA ARG A 494 49.675 11.728 47.179 1.00 55.67 ATOM 31 C ARG A 494 49.400 12.927 46.292 1.00 56.70 ATOM 32 O ARG A 494 48.851 12.786 45.202 1.00 62.63 ATOM 33 CB ARG A 494 48.673 11.720 48.327 1.00 59.56 ATOM 34 CG ARG A 494 47.219 11.712 47.867 1.00 68.75 ATOM 35 CD ARG A 494 46.910 10.539 46.930 1.00 73.63 ATOM 36 NE ARG A 494 45.506 10.529 46.516 1.00 81.52 ATOM 37 CZ ARG A 494 44.987 9.694 45.619 1.00 78.43 ATOM 38 NH1 ARG A 494 45.755 8.790 45.028 1.00 79.69 ATOM 39 NH2 ARG A 494 43.698 9.759 45.315 1.00 77.95 ATOM 40 N GLN A 495 49.783 14.108 46.765 1.00 59.91 ATOM 41 CA GLN A 495 49.574 15.337 46.009 1.00 53.89 ATOM 42 C GLN A 495 50.251 15.280 44.649 1.00 51.30 ATOM 43 O GLN A 495 49.717 15.792 43.667 1.00 54.38 ATOM 44 CB GLN A 495 50.088 16.537 46.800 1.00 59.50 ATOM 45 CG GLN A 495 49.179 16.970 47.937 1.00 59.80 ATOM 46 CD GLN A 495 49.951 17.568 49.104 1.00 69.62 ATOM 47 OE1 GLN A 495 50.986 18.218 48.923 1.00 67.52 ATOM 48 NE2 GLN A 495 49.441 17.356 50.314 1.00 70.99 ATOM 49 N TRP A 496 51.426 14.666 44.577 1.00 45.78 ATOM 50 CA TRP A 496 52.106 14.565 43.292 1.00 44.65 ATOM 51 C TRP A 496 51.361 13.613 42.366 1.00 44.39 ATOM 52 O TRP A 496 51.406 13.765 41.144 1.00 42.71 ATOM 53 CB TRP A 496 53.543 14.086 43.471 1.00 43.93 ATOM 54 CG TRP A 496 54.499 15.184 43.798 1.00 48.90 ATOM 55 CD1 TRP A 496 55.266 15.298 44.924 1.00 48.34 ATOM 56 CD2 TRP A 496 54.793 16.333 42.993 1.00 46.84 ATOM 57 NE1 TRP A 496 56.017 16.445 44.869 1.00 47.78 ATOM 58 CE2 TRP A 496 55.748 17.101 43.696 1.00 47.76 ATOM 59 CE3 TRP A 496 54.343 16.789 41.745 1.00 49.70 ATOM 60 CZ2 TRP A 496 56.261 18.304 43.195 1.00 46.51 ATOM 61 CZ3 TRP A 496 54.855 17.988 41.242 1.00 46.30 ATOM 62 CH2 TRP A 496 55.804 18.729 41.971 1.00 46.03 ATOM 63 N TYR A 497 50.684 12.629 42.952 1.00 44.87 ATOM 64 CA TYR A 497 49.922 11.661 42.174 1.00 46.83 ATOM 65 C TYR A 497 48.757 12.390 41.519 1.00 45.92 ATOM 66 O TYR A 497 48.382 12.084 40.384 1.00 39.69 ATOM 67 CB TYR A 497 49.398 10.530 43.065 1.00 49.48 ATOM 68 CG TYR A 497 48.728 9.419 42.286 1.00 53.99 ATOM 69 CD1 TYR A 497 49.422 8.725 41.297 1.00 49.59 ATOM 70 CD2 TYR A 497 47.396 9.076 42.519 1.00 54.34 ATOM 71 CE1 TYR A 497 48.814 7.726 40.556 1.00 53.83 ATOM 72 CE2 TYR A 497 46.771 8.069 41.778 1.00 57.42 ATOM 73 CZ TYR A 497 47.488 7.399 40.796 1.00 60.30 ATOM 74 OH TYR A 497 46.882 6.412 40.044 1.00 61.55 ATOM 75 N MET A 498 48.203 13.365 42.242 1.00 47.74 ATOM 76 CA MET A 498 47.095 14.181 41.749 1.00 44.74 ATOM 77 C MET A 498 47.568 15.038 40.577 1.00 44.17 ATOM 78 O MET A 498 46.779 15.744 39.956 1.00 52.90 ATOM 79 CB MET A 498 46.570 15.090 42.857 1.00 50.06 ATOM 80 CG MET A 498 46.231 14.365 44.148 1.00 57.77 ATOM 81 SD MET A 498 44.562 13.709 44.206 1.00 72.55 ATOM 82 CE MET A 498 43.997 14.309 45.835 1.00 73.68 ATOM 83 N ASN A 499 48.865 14.985 40.290 1.00 45.53 ATOM 84 CA ASN A 499 49.439 15.725 39.170 1.00 42.94 ATOM 85 C ASN A 499 50.027 14.735 38.176 1.00 45.51 ATOM 86 O ASN A 499 50.691 15.123 37.212 1.00 47.21 ATOM 87 CB ASN A 499 50.537 16.681 39.646 1.00 49.99 ATOM 88 CG ASN A 499 49.994 17.813 40.501 1.00 56.47 ATOM 89 OD1 ASN A 499 49.570 17.604 41.641 1.00 62.34 ATOM 90 ND2 ASN A 499 49.995 19.020 39.949 1.00 54.40 ATOM 91 N GLY A 500 49.778 13.450 38.421 1.00 46.11 ATOM 92 CA GLY A 500 50.277 12.410 37.539 1.00 45.04 ATOM 93 C GLY A 500 51.767 12.145 37.656 1.00 42.05 ATOM 94 O GLY A 500 52.438 11.883 36.659 1.00 41.92 ATOM 95 N ARG A 501 52.296 12.214 38.870 1.00 40.20 ATOM 96 CA ARG A 501 53.718 11.972 39.065 1.00 39.09 ATOM 97 C ARG A 501 53.930 11.060 40.257 1.00 36.16 ATOM 98 O ARG A 501 53.130 11.047 41.190 1.00 32.54 ATOM 99 CB ARG A 501 54.463 13.294 39.293 1.00 39.79 ATOM 100 CG ARG A 501 54.272 14.321 38.175 1.00 44.34 ATOM 101 CD ARG A 501 55.476 15.241 38.050 1.00 45.52 ATOM 102 NE ARG A 501 56.074 15.156 36.717 1.00 48.16 ATOM 103 CZ ARG A 501 57.371 14.956 36.489 1.00 52.35 ATOM 104 NH1 ARG A 501 58.215 14.817 37.505 1.00 49.09 ATOM 105 NH2 ARG A 501 57.827 14.894 35.244 1.00 52.32 ATOM 106 N ILE A 502 54.999 10.277 40.216 1.00 37.45 ATOM 107 CA ILE A 502 55.306 9.393 41.331 1.00 43.20 ATOM 108 C ILE A 502 56.740 9.652 41.751 1.00 41.18 ATOM 109 O ILE A 502 57.538 10.163 40.966 1.00 38.29 ATOM 110 CB ILE A 502 55.141 7.899 40.957 1.00 40.77 ATOM 111 CG1 ILE A 502 55.945 7.579 39.699 1.00 45.40 ATOM 112 CG2 ILE A 502 53.674 7.583 40.749 1.00 34.91 ATOM 113 CD1 ILE A 502 56.121 6.097 39.445 1.00 53.07 ATOM 114 N LEU A 503 57.057 9.317 42.996 1.00 46.77 ATOM 115 CA LEU A 503 58.404 9.507 43.523 1.00 47.97 ATOM 116 C LEU A 503 59.391 8.508 42.918 1.00 50.16 ATOM 117 O LEU A 503 59.072 7.323 42.779 1.00 51.82 ATOM 118 CB LEU A 503 58.396 9.334 45.044 1.00 46.06 ATOM 119 CG LEU A 503 57.477 10.250 45.846 1.00 46.48 ATOM 120 CD1 LEU A 503 57.555 9.886 47.309 1.00 36.80 ATOM 121 CD2 LEU A 503 57.889 11.691 45.630 1.00 50.87 ATOM 122 N LYS A 504 60.580 8.991 42.553 1.00 51.97 ATOM 123 CA LYS A 504 61.627 8.132 42.003 1.00 55.05 ATOM 124 C LYS A 504 62.113 7.213 43.125 1.00 60.04 ATOM 125 O LYS A 504 61.921 7.514 44.303 1.00 56.87 ATOM 126 CB LYS A 504 62.796 8.966 41.488 1.00 50.63 ATOM 127 CG LYS A 504 62.466 9.800 40.280 1.00 53.95 ATOM 128 CD LYS A 504 63.675 10.586 39.828 1.00 56.68 ATOM 129 CE LYS A 504 63.336 11.473 38.648 1.00 66.83 ATOM 130 NZ LYS A 504 64.491 12.335 38.263 1.00 75.97 ATOM 131 N THR A 505 62.734 6.095 42.762 1.00 70.10 ATOM 132 CA THR A 505 63.217 5.135 43.757 1.00 75.83 ATOM 133 C THR A 505 64.114 5.788 44.815 1.00 77.01 ATOM 134 O THR A 505 63.922 5.588 46.019 1.00 73.20 ATOM 135 CB THR A 505 63.990 3.974 43.086 1.00 75.52 ATOM 136 OG1 THR A 505 63.177 3.382 42.065 1.00 82.22 ATOM 137 CG2 THR A 505 64.337 2.906 44.111 1.00 78.79 ATOM 138 N GLY A 506 65.092 6.567 44.365 1.00 76.46 ATOM 139 CA GLY A 506 65.984 7.228 45.299 1.00 82.30 ATOM 140 C GLY A 506 65.554 8.660 45.534 1.00 86.27 ATOM 141 O GLY A 506 66.050 9.576 44.875 1.00 90.88 ATOM 142 N SER A 507 64.631 8.862 46.469 1.00 85.19 ATOM 143 CA SER A 507 64.146 10.203 46.754 1.00 84.18 ATOM 144 C SER A 507 63.863 10.478 48.220 1.00 83.51 ATOM 145 O SER A 507 63.132 9.738 48.884 1.00 82.48 ATOM 146 CB SER A 507 62.892 10.492 45.930 1.00 80.97 ATOM 147 OG SER A 507 63.228 10.598 44.559 1.00 82.62 ATOM 148 N ARG A 508 64.458 11.561 48.708 1.00 84.42 ATOM 149 CA ARG A 508 64.293 11.987 50.088 1.00 84.19 ATOM 150 C ARG A 508 63.574 13.322 50.066 1.00 77.41 ATOM 151 O ARG A 508 63.901 14.199 49.265 1.00 69.26 ATOM 152 CB ARG A 508 65.651 12.154 50.766 1.00 90.37 ATOM 153 CG ARG A 508 65.570 12.092 52.279 1.00100.52 ATOM 154 CD ARG A 508 65.312 10.666 52.756 1.00104.56 ATOM 155 NE ARG A 508 66.525 10.013 53.257 1.00110.63 ATOM 156 CZ ARG A 508 67.595 9.718 52.519 1.00110.64 ATOM 157 NH1 ARG A 508 67.625 10.010 51.225 1.00109.87 ATOM 158 NH2 ARG A 508 68.645 9.132 53.082 1.00110.14 ATOM 159 N CYS A 509 62.598 13.473 50.951 1.00 76.55 ATOM 160 CA CYS A 509 61.823 14.701 51.013 1.00 79.08 ATOM 161 C CYS A 509 62.675 15.947 51.237 1.00 80.18 ATOM 162 O CYS A 509 63.847 15.861 51.609 1.00 80.27 ATOM 163 CB CYS A 509 60.754 14.588 52.104 1.00 79.23 ATOM 164 SG CYS A 509 61.357 14.084 53.712 1.00 76.10 ATOM 165 N LYS A 510 62.074 17.106 50.985 1.00 76.86 ATOM 166 CA LYS A 510 62.751 18.382 51.157 1.00 75.13 ATOM 167 C LYS A 510 62.292 19.034 52.453 1.00 76.65 ATOM 168 O LYS A 510 62.908 19.990 52.928 1.00 78.94 ATOM 169 CB LYS A 510 62.435 19.314 49.987 1.00 74.09 ATOM 170 CG LYS A 510 63.621 19.651 49.096 1.00 71.17 ATOM 171 CD LYS A 510 64.098 18.445 48.321 1.00 70.17 ATOM 172 CE LYS A 510 65.086 18.851 47.246 1.00 73.52 ATOM 173 NZ LYS A 510 65.493 17.689 46.404 1.00 79.82 ATOM 174 N LYS A 511 61.206 18.511 53.015 1.00 74.44 ATOM 175 CA LYS A 511 60.645 19.038 54.255 1.00 75.25 ATOM 176 C LYS A 511 59.591 18.089 54.803 1.00 72.97 ATOM 177 O LYS A 511 59.098 17.218 54.092 1.00 72.98 ATOM 178 CB LYS A 511 60.011 20.420 54.019 1.00 75.55 ATOM 179 CG LYS A 511 59.252 20.966 55.234 1.00 79.18 ATOM 180 CD LYS A 511 58.532 22.288 54.969 1.00 77.50 ATOM 181 CE LYS A 511 59.486 23.470 54.945 1.00 76.78 ATOM 182 NZ LYS A 511 58.753 24.764 54.861 1.00 77.31 ATOM 183 N VAL A 512 59.248 18.269 56.071 1.00 73.12 ATOM 184 CA VAL A 512 58.246 17.442 56.719 1.00 78.24 ATOM 185 C VAL A 512 57.310 18.303 57.563 1.00 83.46 ATOM 186 O VAL A 512 57.694 18.773 58.632 1.00 87.27 ATOM 187 CB VAL A 512 58.905 16.392 57.643 1.00 78.48 ATOM 188 CG1 VAL A 512 57.838 15.516 58.290 1.00 70.40 ATOM 189 CG2 VAL A 512 59.892 15.550 56.852 1.00 78.49 ATOM 190 N ILE A 513 56.090 18.520 57.086 1.00 88.82 ATOM 191 CA ILE A 513 55.125 19.308 57.842 1.00 93.64 ATOM 192 C ILE A 513 54.328 18.337 58.700 1.00 95.98 ATOM 193 O ILE A 513 53.980 17.249 58.248 1.00 98.65 ATOM 194 CB ILE A 513 54.162 20.090 56.915 1.00 95.89 ATOM 195 CG1 ILE A 513 53.282 19.127 56.117 1.00 99.02 ATOM 196 CG2 ILE A 513 54.961 20.956 55.959 1.00 97.75 ATOM 197 CD1 ILE A 513 52.280 19.827 55.213 1.00 99.88 ATOM 198 N LYS A 514 54.052 18.720 59.940 1.00100.56 ATOM 199 CA LYS A 514 53.310 17.850 60.840 1.00105.53 ATOM 200 C LYS A 514 51.812 18.115 60.775 1.00108.67 ATOM 201 O LYS A 514 51.364 19.071 60.136 1.00107.34 ATOM 202 CB LYS A 514 53.812 18.030 62.279 1.00106.76 ATOM 203 CG LYS A 514 53.143 17.110 63.295 1.00111.08 ATOM 204 CD LYS A 514 53.670 17.319 64.705 1.00111.01 ATOM 205 CE LYS A 514 52.855 16.521 65.715 1.00108.20 ATOM 206 NZ LYS A 514 52.839 15.063 65.407 1.00106.53 ATOM 207 N ARG A 515 51.041 17.251 61.429 1.00114.07 ATOM 208 CA ARG A 515 49.588 17.384 61.461 1.00117.42 ATOM 209 C ARG A 515 49.096 17.383 62.916 1.00117.87 ATOM 210 O ARG A 515 49.840 17.027 63.841 1.00117.44 ATOM 211 CB ARG A 515 48.930 16.228 60.695 1.00117.51 ATOM 212 CG ARG A 515 47.642 16.603 59.969 1.00115.95 ATOM 213 CD ARG A 515 46.720 17.456 60.839 1.00120.23 ATOM 214 NE ARG A 515 46.269 16.765 62.046 1.00120.23 ATOM 215 CZ ARG A 515 45.591 17.349 63.032 1.00120.23 ATOM 216 NH1 ARG A 515 45.284 18.640 62.961 1.00120.23 ATOM 217 NH2 ARG A 515 45.215 16.642 64.090 1.00120.23 ATOM 218 N ASP A 528 52.314 12.745 60.277 1.00 93.77 ATOM 219 CA ASP A 528 53.177 13.733 59.641 1.00 97.60 ATOM 220 C ASP A 528 53.337 13.430 58.158 1.00 96.12 ATOM 221 O ASP A 528 53.411 12.264 57.762 1.00 98.99 ATOM 222 CB ASP A 528 54.556 13.741 60.301 1.00103.41 ATOM 223 CG ASP A 528 54.493 14.069 61.782 1.00109.14 ATOM 224 OD1 ASP A 528 55.568 14.166 62.413 1.00109.49 ATOM 225 OD2 ASP A 528 53.369 14.227 62.310 1.00110.43 ATOM 226 N GLU A 529 53.396 14.483 57.345 1.00 92.94 ATOM 227 CA GLU A 529 53.549 14.334 55.902 1.00 89.10 ATOM 228 C GLU A 529 54.926 14.755 55.413 1.00 83.77 ATOM 229 O GLU A 529 55.506 15.725 55.900 1.00 82.25 ATOM 230 CB GLU A 529 52.502 15.161 55.160 1.00 95.67 ATOM 231 CG GLU A 529 51.101 14.591 55.192 1.00105.34 ATOM 232 CD GLU A 529 50.124 15.453 54.422 1.00111.32 ATOM 233 OE1 GLU A 529 50.367 15.692 53.217 1.00111.09 ATOM 234 OE2 GLU A 529 49.118 15.890 55.023 1.00113.23 ATOM 235 N ARG A 530 55.437 14.017 54.436 1.00 78.60 ATOM 236 CA ARG A 530 56.733 14.310 53.843 1.00 73.75 ATOM 237 C ARG A 530 56.443 14.948 52.496 1.00 66.67 ATOM 238 O ARG A 530 55.597 14.463 51.744 1.00 69.20 ATOM 239 CB ARG A 530 57.528 13.019 53.659 1.00 80.38 ATOM 240 CG ARG A 530 57.556 12.160 54.904 1.00 90.39 ATOM 241 CD ARG A 530 58.294 10.861 54.675 1.00 94.35 ATOM 242 NE ARG A 530 58.160 9.969 55.821 1.00100.05 ATOM 243 CZ ARG A 530 58.759 8.787 55.920 1.00106.92 ATOM 244 NH1 ARG A 530 59.543 8.354 54.940 1.00109.32 ATOM 245 NH2 ARG A 530 58.570 8.035 56.997 1.00109.84 ATOM 246 N LEU A 531 57.145 16.033 52.196 1.00 58.24 ATOM 247 CA LEU A 531 56.942 16.759 50.950 1.00 52.67 ATOM 248 C LEU A 531 58.180 16.646 50.070 1.00 50.86 ATOM 249 O LEU A 531 59.299 16.690 50.567 1.00 59.00 ATOM 250 CB LEU A 531 56.649 18.232 51.270 1.00 53.57 ATOM 251 CG LEU A 531 55.591 18.484 52.358 1.00 56.13 ATOM 252 CD1 LEU A 531 55.554 19.958 52.716 1.00 62.28 ATOM 253 CD2 LEU A 531 54.225 18.024 51.883 1.00 60.50 ATOM 254 N TYR A 532 57.986 16.506 48.765 1.00 47.18 ATOM 255 CA TYR A 532 59.116 16.386 47.847 1.00 46.71 ATOM 256 C TYR A 532 59.013 17.470 46.795 1.00 47.46 ATOM 257 O TYR A 532 58.047 18.224 46.772 1.00 55.90 ATOM 258 CB TYR A 532 59.111 15.003 47.165 1.00 50.42 ATOM 259 CG TYR A 532 59.059 13.849 48.141 1.00 45.87 ATOM 260 CD1 TYR A 532 57.884 13.557 48.836 1.00 49.28 ATOM 261 CD2 TYR A 532 60.202 13.107 48.439 1.00 47.20 ATOM 262 CE1 TYR A 532 57.849 12.562 49.818 1.00 51.19 ATOM 263 CE2 TYR A 532 60.182 12.110 49.416 1.00 48.72 ATOM 264 CZ TYR A 532 59.002 11.847 50.104 1.00 54.52 ATOM 265 OH TYR A 532 58.976 10.892 51.098 1.00 69.76 TER