HEADER RIBOSOME 24-MAR-09 2WDI TITLE STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH TITLE 2 MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND TITLE 3 E-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I. COMPND MOL_ID: 5; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L31; COMPND 3 CHAIN: 4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 2WDI 4 27 97 UNP Q5SJE1 RL31_THET8 1 71 SEQRES 1 4 31 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 4 31 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 4 31 CYS SER LYS CYS HIS ATOM 1 N VAL 4 36 -124.002 160.968 119.737 1.00 63.95 ATOM 2 CA VAL 4 36 -125.138 161.490 118.915 1.00 89.09 ATOM 3 C VAL 4 36 -126.068 160.377 118.408 1.00 92.90 ATOM 4 O VAL 4 36 -125.735 159.192 118.487 1.00 88.85 ATOM 5 CB VAL 4 36 -124.613 162.283 117.705 1.00 97.17 ATOM 6 CG1 VAL 4 36 -123.739 163.417 118.178 1.00 88.56 ATOM 7 CG2 VAL 4 36 -123.835 161.371 116.782 1.00 87.17 ATOM 8 N PRO 4 37 -127.254 160.744 117.883 1.00145.12 ATOM 9 CA PRO 4 37 -128.186 159.732 117.380 1.00142.05 ATOM 10 C PRO 4 37 -127.624 159.074 116.132 1.00138.63 ATOM 11 O PRO 4 37 -126.989 159.732 115.312 1.00115.89 ATOM 12 CB PRO 4 37 -129.444 160.540 117.097 1.00 90.14 ATOM 13 CG PRO 4 37 -128.884 161.855 116.658 1.00 89.82 ATOM 14 CD PRO 4 37 -127.799 162.098 117.675 1.00 68.12 ATOM 15 N ALA 4 38 -127.857 157.778 115.985 1.00115.56 ATOM 16 CA ALA 4 38 -127.342 157.060 114.830 1.00114.82 ATOM 17 C ALA 4 38 -128.402 156.243 114.095 1.00111.04 ATOM 18 O ALA 4 38 -129.365 155.758 114.691 1.00106.39 ATOM 19 CB ALA 4 38 -126.182 156.160 115.261 1.00154.42 ATOM 20 N ARG 4 39 -128.201 156.094 112.789 1.00138.10 ATOM 21 CA ARG 4 39 -129.113 155.350 111.928 1.00142.07 ATOM 22 C ARG 4 39 -128.373 154.174 111.292 1.00143.37 ATOM 23 O ARG 4 39 -127.287 154.348 110.738 1.00138.93 ATOM 24 CB ARG 4 39 -129.641 156.276 110.827 1.00156.47 ATOM 25 CG ARG 4 39 -130.179 157.614 111.328 1.00161.10 ATOM 26 CD ARG 4 39 -130.690 158.468 110.178 1.00165.42 ATOM 27 NE ARG 4 39 -131.590 157.712 109.312 1.00165.12 ATOM 28 CZ ARG 4 39 -132.693 157.100 109.730 1.00159.78 ATOM 29 NH1 ARG 4 39 -133.040 157.155 111.008 1.00152.42 ATOM 30 NH2 ARG 4 39 -133.447 156.423 108.873 1.00154.83 ATOM 31 N ILE 4 40 -128.950 152.980 111.367 1.00154.00 ATOM 32 CA ILE 4 40 -128.308 151.811 110.774 1.00148.78 ATOM 33 C ILE 4 40 -129.071 151.309 109.540 1.00145.05 ATOM 34 O ILE 4 40 -130.258 150.998 109.614 1.00142.45 ATOM 35 CB ILE 4 40 -128.173 150.663 111.802 1.00 91.49 ATOM 36 CG1 ILE 4 40 -127.217 151.063 112.928 1.00 89.28 ATOM 37 CG2 ILE 4 40 -127.645 149.424 111.120 1.00 81.14 ATOM 38 CD1 ILE 4 40 -127.772 152.098 113.866 1.00 78.92 ATOM 39 N ILE 4 41 -128.375 151.238 108.407 1.00130.06 ATOM 40 CA ILE 4 41 -128.954 150.793 107.138 1.00134.28 ATOM 41 C ILE 4 41 -128.475 149.380 106.790 1.00133.88 ATOM 42 O ILE 4 41 -127.531 149.199 106.012 1.00127.40 ATOM 43 CB ILE 4 41 -128.570 151.783 106.000 1.00101.89 ATOM 44 CG1 ILE 4 41 -129.200 153.145 106.278 1.00104.36 ATOM 45 CG2 ILE 4 41 -129.029 151.269 104.653 1.00 98.00 ATOM 46 CD1 ILE 4 41 -130.693 153.092 106.466 1.00 93.89 ATOM 47 N CYS 4 42 -129.152 148.387 107.362 1.00145.54 ATOM 48 CA CYS 4 42 -128.812 146.976 107.176 1.00147.49 ATOM 49 C CYS 4 42 -129.074 146.381 105.797 1.00147.87 ATOM 50 O CYS 4 42 -129.772 146.969 104.972 1.00149.59 ATOM 51 CB CYS 4 42 -129.554 146.143 108.213 1.00157.35 ATOM 52 SG CYS 4 42 -129.437 146.838 109.854 1.00146.97 ATOM 53 N GLY 4 43 -128.503 145.199 105.569 1.00125.96 ATOM 54 CA GLY 4 43 -128.672 144.499 104.310 1.00124.78 ATOM 55 C GLY 4 43 -129.973 143.728 104.340 1.00127.12 ATOM 56 O GLY 4 43 -130.633 143.564 103.315 1.00117.83 ATOM 57 N CYS 4 44 -130.341 143.251 105.525 1.00179.80 ATOM 58 CA CYS 4 44 -131.586 142.519 105.692 1.00183.01 ATOM 59 C CYS 4 44 -132.674 143.494 106.161 1.00186.69 ATOM 60 O CYS 4 44 -133.282 143.321 107.215 1.00182.74 ATOM 61 CB CYS 4 44 -131.403 141.352 106.686 1.00123.83 ATOM 62 SG CYS 4 44 -130.891 141.770 108.371 1.00142.62 ATOM 63 N GLY 4 45 -132.899 144.531 105.359 1.00112.65 ATOM 64 CA GLY 4 45 -133.905 145.530 105.673 1.00124.35 ATOM 65 C GLY 4 45 -133.654 146.317 106.946 1.00110.65 ATOM 66 O GLY 4 45 -133.158 147.446 106.908 1.00110.80 ATOM 67 N ASN 4 46 -134.019 145.706 108.069 1.00138.12 ATOM 68 CA ASN 4 46 -133.878 146.275 109.411 1.00141.41 ATOM 69 C ASN 4 46 -133.081 147.576 109.532 1.00156.39 ATOM 70 O ASN 4 46 -132.002 147.719 108.956 1.00165.92 ATOM 71 CB ASN 4 46 -133.267 145.217 110.341 1.00200.00 ATOM 72 CG ASN 4 46 -133.299 145.624 111.809 1.00200.00 ATOM 73 OD1 ASN 4 46 -132.788 144.904 112.672 1.00200.00 ATOM 74 ND2 ASN 4 46 -133.903 146.773 112.100 1.00200.00 ATOM 75 N VAL 4 47 -133.632 148.518 110.295 1.00150.21 ATOM 76 CA VAL 4 47 -132.992 149.809 110.546 1.00152.88 ATOM 77 C VAL 4 47 -133.123 150.183 112.025 1.00155.22 ATOM 78 O VAL 4 47 -134.167 150.673 112.459 1.00162.35 ATOM 79 CB VAL 4 47 -133.614 150.934 109.678 1.00 93.43 ATOM 80 CG1 VAL 4 47 -133.112 152.298 110.138 1.00 80.05 ATOM 81 CG2 VAL 4 47 -133.243 150.715 108.215 1.00 88.60 ATOM 82 N ILE 4 48 -132.057 149.940 112.790 1.00144.90 ATOM 83 CA ILE 4 48 -132.035 150.243 114.220 1.00148.27 ATOM 84 C ILE 4 48 -131.584 151.680 114.419 1.00137.82 ATOM 85 O ILE 4 48 -130.716 152.177 113.691 1.00130.42 ATOM 86 CB ILE 4 48 -131.037 149.348 115.008 1.00132.07 ATOM 87 CG1 ILE 4 48 -130.948 147.953 114.389 1.00117.72 ATOM 88 CG2 ILE 4 48 -131.467 149.260 116.467 1.00123.23 ATOM 89 CD1 ILE 4 48 -130.044 147.886 113.171 1.00103.10 ATOM 90 N GLU 4 49 -132.168 152.351 115.405 1.00126.40 ATOM 91 CA GLU 4 49 -131.776 153.720 115.672 1.00133.11 ATOM 92 C GLU 4 49 -131.225 153.840 117.083 1.00140.69 ATOM 93 O GLU 4 49 -131.969 153.859 118.063 1.00132.67 ATOM 94 CB GLU 4 49 -132.951 154.677 115.474 1.00172.94 ATOM 95 CG GLU 4 49 -132.499 156.086 115.104 1.00174.77 ATOM 96 CD GLU 4 49 -133.648 157.007 114.752 1.00182.45 ATOM 97 OE1 GLU 4 49 -134.528 156.581 113.977 1.00184.77 ATOM 98 OE2 GLU 4 49 -133.667 158.159 115.240 1.00171.47 ATOM 99 N THR 4 50 -129.902 153.897 117.168 1.00127.17 ATOM 100 CA THR 4 50 -129.208 154.022 118.436 1.00121.30 ATOM 101 C THR 4 50 -128.378 155.293 118.403 1.00116.37 ATOM 102 O THR 4 50 -128.653 156.199 117.618 1.00106.97 ATOM 103 CB THR 4 50 -128.281 152.826 118.683 1.00125.75 ATOM 104 OG1 THR 4 50 -127.424 152.645 117.551 1.00126.94 ATOM 105 CG2 THR 4 50 -129.098 151.567 118.907 1.00108.34 ATOM 106 N TYR 4 51 -127.363 155.362 119.253 1.00137.84 ATOM 107 CA TYR 4 51 -126.521 156.542 119.304 1.00137.02 ATOM 108 C TYR 4 51 -125.067 156.122 119.428 1.00137.57 ATOM 109 O TYR 4 51 -124.760 155.092 120.035 1.00134.83 ATOM 110 CB TYR 4 51 -126.925 157.417 120.496 1.00178.73 ATOM 111 CG TYR 4 51 -128.415 157.446 120.719 1.00193.79 ATOM 112 CD1 TYR 4 51 -129.049 156.422 121.422 1.00190.19 ATOM 113 CD2 TYR 4 51 -129.205 158.447 120.157 1.00183.04 ATOM 114 CE1 TYR 4 51 -130.436 156.389 121.557 1.00193.58 ATOM 115 CE2 TYR 4 51 -130.596 158.423 120.281 1.00180.44 ATOM 116 CZ TYR 4 51 -131.205 157.389 120.982 1.00194.76 ATOM 117 OH TYR 4 51 -132.577 157.342 121.098 1.00193.11 ATOM 118 N SER 4 52 -124.178 156.920 118.843 1.00177.71 ATOM 119 CA SER 4 52 -122.745 156.651 118.884 1.00174.72 ATOM 120 C SER 4 52 -121.981 157.806 118.244 1.00188.42 ATOM 121 O SER 4 52 -121.676 158.813 118.894 1.00183.91 ATOM 122 CB SER 4 52 -122.433 155.354 118.137 1.00110.10 ATOM 123 OG SER 4 52 -122.859 155.446 116.790 1.00116.55 ATOM 124 N THR 4 53 -121.681 157.640 116.961 1.00121.29 ATOM 125 CA THR 4 53 -120.966 158.631 116.175 1.00119.21 ATOM 126 C THR 4 53 -121.330 158.388 114.719 1.00120.08 ATOM 127 O THR 4 53 -121.555 157.250 114.318 1.00109.65 ATOM 128 CB THR 4 53 -119.439 158.498 116.353 1.00 72.28 ATOM 129 OG1 THR 4 53 -119.074 157.114 116.303 1.00 77.66 ATOM 130 CG2 THR 4 53 -119.000 159.085 117.677 1.00 52.17 ATOM 131 N LYS 4 54 -121.386 159.466 113.946 1.00200.00 ATOM 132 CA LYS 4 54 -121.734 159.422 112.529 1.00200.00 ATOM 133 C LYS 4 54 -122.847 158.425 112.197 1.00200.00 ATOM 134 O LYS 4 54 -122.632 157.213 112.191 1.00200.00 ATOM 135 CB LYS 4 54 -120.484 159.141 111.669 1.00147.04 ATOM 136 CG LYS 4 54 -119.761 157.813 111.921 1.00137.64 ATOM 137 CD LYS 4 54 -118.645 157.602 110.888 1.00140.23 ATOM 138 CE LYS 4 54 -117.946 156.260 111.058 1.00128.38 ATOM 139 NZ LYS 4 54 -116.827 156.068 110.089 1.00125.38 ATOM 140 N PRO 4 55 -124.063 158.935 111.932 1.00171.97 ATOM 141 CA PRO 4 55 -125.255 158.141 111.590 1.00160.88 ATOM 142 C PRO 4 55 -125.194 157.321 110.287 1.00157.73 ATOM 143 O PRO 4 55 -126.092 156.529 110.012 1.00155.96 ATOM 144 CB PRO 4 55 -126.370 159.189 111.569 1.00100.78 ATOM 145 CG PRO 4 55 -125.916 160.155 112.618 1.00110.18 ATOM 146 CD PRO 4 55 -124.449 160.311 112.291 1.00108.07 ATOM 147 N GLU 4 56 -124.147 157.514 109.488 1.00169.13 ATOM 148 CA GLU 4 56 -123.987 156.767 108.238 1.00169.59 ATOM 149 C GLU 4 56 -123.512 155.351 108.569 1.00156.91 ATOM 150 O GLU 4 56 -122.318 155.118 108.752 1.00146.65 ATOM 151 CB GLU 4 56 -122.961 157.463 107.338 1.00183.58 ATOM 152 CG GLU 4 56 -123.550 158.146 106.112 1.00188.06 ATOM 153 CD GLU 4 56 -123.803 157.185 104.962 1.00193.36 ATOM 154 OE1 GLU 4 56 -124.532 156.187 105.156 1.00185.80 ATOM 155 OE2 GLU 4 56 -123.271 157.432 103.858 1.00193.83 ATOM 156 N ILE 4 57 -124.445 154.405 108.628 1.00151.09 ATOM 157 CA ILE 4 57 -124.104 153.030 108.979 1.00156.87 ATOM 158 C ILE 4 57 -124.640 151.935 108.044 1.00146.20 ATOM 159 O ILE 4 57 -125.758 151.454 108.236 1.00134.84 ATOM 160 CB ILE 4 57 -124.600 152.718 110.418 1.00113.55 ATOM 161 CG1 ILE 4 57 -124.011 153.725 111.407 1.00101.95 ATOM 162 CG2 ILE 4 57 -124.233 151.299 110.811 1.00101.69 ATOM 163 CD1 ILE 4 57 -122.505 153.698 111.502 1.00 88.83 ATOM 164 N TYR 4 58 -123.852 151.539 107.042 1.00101.01 ATOM 165 CA TYR 4 58 -124.259 150.458 106.129 1.00101.50 ATOM 166 C TYR 4 58 -123.937 149.154 106.861 1.00107.86 ATOM 167 O TYR 4 58 -122.862 149.020 107.439 1.00107.28 ATOM 168 CB TYR 4 58 -123.452 150.479 104.823 1.00163.19 ATOM 169 CG TYR 4 58 -123.806 151.549 103.804 1.00182.43 ATOM 170 CD1 TYR 4 58 -123.085 151.646 102.607 1.00180.88 ATOM 171 CD2 TYR 4 58 -124.841 152.460 104.024 1.00179.58 ATOM 172 CE1 TYR 4 58 -123.379 152.618 101.656 1.00173.56 ATOM 173 CE2 TYR 4 58 -125.147 153.444 103.074 1.00187.12 ATOM 174 CZ TYR 4 58 -124.408 153.514 101.892 1.00180.68 ATOM 175 OH TYR 4 58 -124.690 154.477 100.947 1.00168.16 ATOM 176 N VAL 4 59 -124.852 148.193 106.838 1.00157.15 ATOM 177 CA VAL 4 59 -124.609 146.930 107.528 1.00151.70 ATOM 178 C VAL 4 59 -124.993 145.711 106.702 1.00154.00 ATOM 179 O VAL 4 59 -126.166 145.501 106.402 1.00154.71 ATOM 180 CB VAL 4 59 -125.371 146.878 108.883 1.00 89.23 ATOM 181 CG1 VAL 4 59 -125.374 145.451 109.442 1.00 79.88 ATOM 182 CG2 VAL 4 59 -124.718 147.826 109.879 1.00 87.46 ATOM 183 N GLU 4 60 -123.997 144.911 106.335 1.00120.78 ATOM 184 CA GLU 4 60 -124.245 143.702 105.566 1.00122.01 ATOM 185 C GLU 4 60 -124.937 142.683 106.457 1.00119.08 ATOM 186 O GLU 4 60 -124.319 141.723 106.920 1.00113.07 ATOM 187 CB GLU 4 60 -122.934 143.122 105.028 1.00192.41 ATOM 188 CG GLU 4 60 -122.418 143.832 103.789 1.00200.00 ATOM 189 CD GLU 4 60 -122.197 145.311 104.020 1.00199.47 ATOM 190 OE1 GLU 4 60 -121.284 145.657 104.796 1.00195.15 ATOM 191 OE2 GLU 4 60 -122.940 146.127 103.433 1.00191.13 ATOM 192 N VAL 4 61 -126.224 142.915 106.701 1.00118.98 ATOM 193 CA VAL 4 61 -127.041 142.036 107.529 1.00121.53 ATOM 194 C VAL 4 61 -126.820 142.264 109.027 1.00126.26 ATOM 195 O VAL 4 61 -125.753 141.966 109.545 1.00121.15 ATOM 196 CB VAL 4 61 -126.773 140.531 107.175 1.00139.29 ATOM 197 CG1 VAL 4 61 -127.387 139.613 108.220 1.00132.93 ATOM 198 CG2 VAL 4 61 -127.350 140.210 105.797 1.00131.94 ATOM 199 N CYS 4 62 -127.828 142.807 109.711 1.00109.86 ATOM 200 CA CYS 4 62 -127.752 143.036 111.152 1.00100.10 ATOM 201 C CYS 4 62 -128.163 141.728 111.825 1.00 89.04 ATOM 202 O CYS 4 62 -127.633 140.675 111.488 1.00 81.38 ATOM 203 CB CYS 4 62 -128.703 144.149 111.578 1.00134.32 ATOM 204 SG CYS 4 62 -130.441 143.726 111.398 1.00147.42 ATOM 205 N SER 4 63 -129.102 141.775 112.766 1.00 97.54 ATOM 206 CA SER 4 63 -129.533 140.545 113.423 1.00104.64 ATOM 207 C SER 4 63 -130.846 139.993 112.853 1.00118.79 ATOM 208 O SER 4 63 -131.909 140.080 113.476 1.00119.83 ATOM 209 CB SER 4 63 -129.674 140.760 114.925 1.00 85.85 ATOM 210 OG SER 4 63 -130.672 141.726 115.189 1.00 88.97 ATOM 211 N LYS 4 64 -130.750 139.433 111.649 1.00153.14 ATOM 212 CA LYS 4 64 -131.878 138.816 110.955 1.00153.07 ATOM 213 C LYS 4 64 -131.365 137.737 110.009 1.00160.01 ATOM 214 O LYS 4 64 -131.712 137.723 108.827 1.00167.80 ATOM 215 CB LYS 4 64 -132.681 139.846 110.164 1.00116.11 ATOM 216 CG LYS 4 64 -133.689 140.610 110.998 1.00117.81 ATOM 217 CD LYS 4 64 -134.640 141.369 110.094 1.00117.17 ATOM 218 CE LYS 4 64 -135.664 142.166 110.877 1.00106.83 ATOM 219 NZ LYS 4 64 -136.619 142.837 109.953 1.00 99.23 ATOM 220 N CYS 4 65 -130.531 136.849 110.553 1.00140.46 ATOM 221 CA CYS 4 65 -129.937 135.729 109.825 1.00140.00 ATOM 222 C CYS 4 65 -129.272 134.760 110.808 1.00137.30 ATOM 223 O CYS 4 65 -128.159 134.293 110.499 1.00130.23 ATOM 224 CB CYS 4 65 -128.884 136.230 108.829 1.00160.35 ATOM 225 SG CYS 4 65 -129.495 137.300 107.501 1.00197.92 ATOM 226 N HIS 4 66 -129.866 134.469 111.870 1.00 97.96 TER