HEADER HYDROLASE 17-DEC-08 3FKS TITLE Yeast F1 ATPase in the absence of bound nucleotides COMPND MOL_ID: 4; COMPND 2 MOLECULE: ATP synthase subunit delta, mitochondrial; COMPND 3 CHAIN: H, Q, Z; COMPND 4 EC: 3.6.3.14; COMPND 5 FRAGMENT: UNP residues ; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.59 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 98 REMARK 465 GLU H 99 REMARK 465 ASN H 100 REMARK 465 SER H 115 REMARK 465 ASP H 116 REMARK 465 ALA H 117 REMARK 465 ARG H 118 DBREF 3FKS H 1 138 UNP Q12165 ATPD_YEAST 23 160 SEQRES 1 H 41 SER PHE SER GLN GLU ASN ILE LYS ASN LEU LEU ALA GLU SEQRES 2 H 41 ALA LYS LYS ASN VAL SER SER SER ASP ALA ARG GLU ALA SEQRES 3 H 41 ALA GLU ALA ALA ILE GLN VAL GLU VAL LEU GLU ASN LEU SEQRES 4 H 41 GLN SER ATOM 1 N SER H 95 -51.624 12.120 17.061 1.00115.45 ATOM 2 CA SER H 95 -51.867 11.857 18.475 1.00112.57 ATOM 3 C SER H 95 -50.617 12.130 19.304 1.00120.20 ATOM 4 O SER H 95 -50.647 12.059 20.533 1.00122.45 ATOM 5 CB SER H 95 -52.330 10.414 18.680 1.00112.29 ATOM 6 OG SER H 95 -51.357 9.494 18.220 1.00105.57 ATOM 7 N PHE H 96 -49.517 12.439 18.623 1.00119.88 ATOM 8 CA PHE H 96 -48.255 12.719 19.297 1.00115.18 ATOM 9 C PHE H 96 -47.960 14.216 19.279 1.00105.98 ATOM 10 O PHE H 96 -47.176 14.711 20.087 1.00106.88 ATOM 11 CB PHE H 96 -47.108 11.941 18.642 1.00116.50 ATOM 12 CG PHE H 96 -46.095 11.412 19.621 1.00136.62 ATOM 13 CD1 PHE H 96 -45.197 12.265 20.240 1.00139.30 ATOM 14 CD2 PHE H 96 -46.045 10.061 19.921 1.00129.18 ATOM 15 CE1 PHE H 96 -44.268 11.779 21.141 1.00119.29 ATOM 16 CE2 PHE H 96 -45.118 9.569 20.821 1.00133.24 ATOM 17 CZ PHE H 96 -44.229 10.430 21.432 1.00124.83 ATOM 18 N SER H 97 -48.594 14.932 18.355 1.00111.64 ATOM 19 CA SER H 97 -48.420 16.377 18.256 1.00112.26 ATOM 20 C SER H 97 -49.067 17.084 19.442 1.00 93.36 ATOM 21 O SER H 97 -48.851 18.276 19.659 1.00 79.34 ATOM 22 CB SER H 97 -49.002 16.907 16.943 1.00110.29 ATOM 23 OG SER H 97 -48.169 16.585 15.842 1.00 90.27 ATOM 24 N ILE H 101 -48.904 25.499 22.972 1.00112.53 ATOM 25 CA ILE H 101 -49.152 26.607 22.058 1.00112.97 ATOM 26 C ILE H 101 -47.963 27.562 22.013 1.00117.77 ATOM 27 O ILE H 101 -47.461 27.994 23.050 1.00104.93 ATOM 28 CB ILE H 101 -50.413 27.394 22.458 1.00 97.97 ATOM 29 N LYS H 102 -47.517 27.886 20.803 1.00128.15 ATOM 30 CA LYS H 102 -46.389 28.791 20.620 1.00119.19 ATOM 31 C LYS H 102 -46.852 30.117 20.019 1.00114.61 ATOM 32 O LYS H 102 -47.217 30.183 18.845 1.00101.04 ATOM 33 CB LYS H 102 -45.325 28.143 19.726 1.00117.47 ATOM 34 CG LYS H 102 -43.967 28.827 19.779 1.00115.85 ATOM 35 CD LYS H 102 -43.025 28.322 18.691 1.00109.72 ATOM 36 CE LYS H 102 -42.395 26.984 19.055 1.00109.68 ATOM 37 NZ LYS H 102 -43.370 25.857 19.045 1.00104.92 ATOM 38 N ASN H 103 -46.836 31.171 20.829 1.00122.10 ATOM 39 CA ASN H 103 -47.284 32.487 20.383 1.00119.44 ATOM 40 C ASN H 103 -46.234 33.576 20.598 1.00120.65 ATOM 41 O ASN H 103 -46.490 34.757 20.353 1.00113.64 ATOM 42 CB ASN H 103 -48.586 32.869 21.088 1.00112.58 ATOM 43 CG ASN H 103 -49.719 31.907 20.783 1.00121.81 ATOM 44 OD1 ASN H 103 -50.546 31.614 21.646 1.00122.94 ATOM 45 ND2 ASN H 103 -49.760 31.409 19.552 1.00125.34 ATOM 46 N LEU H 104 -45.054 33.172 21.056 1.00124.58 ATOM 47 CA LEU H 104 -43.964 34.110 21.309 1.00128.21 ATOM 48 C LEU H 104 -43.217 34.447 20.020 1.00126.58 ATOM 49 O LEU H 104 -42.010 34.696 20.036 1.00130.83 ATOM 50 CB LEU H 104 -42.996 33.534 22.346 1.00130.30 ATOM 51 CG LEU H 104 -43.606 33.122 23.690 1.00129.50 ATOM 52 CD1 LEU H 104 -42.607 32.328 24.521 1.00130.23 ATOM 53 CD2 LEU H 104 -44.105 34.338 24.458 1.00129.26 ATOM 54 N LEU H 105 -43.943 34.457 18.907 1.00127.20 ATOM 55 CA LEU H 105 -43.346 34.714 17.601 1.00127.63 ATOM 56 C LEU H 105 -44.116 35.795 16.853 1.00129.27 ATOM 57 O LEU H 105 -43.692 36.250 15.793 1.00121.24 ATOM 58 CB LEU H 105 -43.308 33.435 16.760 1.00129.14 ATOM 59 CG LEU H 105 -43.074 32.112 17.490 1.00121.65 ATOM 60 CD1 LEU H 105 -44.361 31.636 18.143 1.00106.64 ATOM 61 CD2 LEU H 105 -42.549 31.062 16.526 1.00123.15 ATOM 62 N ALA H 106 -45.254 36.196 17.409 1.00134.19 ATOM 63 CA ALA H 106 -46.073 37.236 16.802 1.00135.29 ATOM 64 C ALA H 106 -45.580 38.617 17.217 1.00137.67 ATOM 65 O ALA H 106 -45.966 39.628 16.632 1.00138.22 ATOM 66 CB ALA H 106 -47.532 37.053 17.181 1.00138.23 ATOM 67 N GLU H 107 -44.725 38.651 18.234 1.00136.11 ATOM 68 CA GLU H 107 -44.161 39.903 18.724 1.00142.50 ATOM 69 C GLU H 107 -42.638 39.882 18.652 1.00149.77 ATOM 70 O GLU H 107 -42.022 40.761 18.050 1.00145.32 ATOM 71 CB GLU H 107 -44.611 40.169 20.164 1.00143.96 ATOM 72 CG GLU H 107 -43.948 41.383 20.805 1.00137.79 ATOM 73 CD GLU H 107 -44.346 41.571 22.258 1.00132.55 ATOM 74 OE1 GLU H 107 -45.518 41.303 22.596 1.00130.61 ATOM 75 OE2 GLU H 107 -43.487 41.993 23.061 1.00132.70 ATOM 76 N ALA H 108 -42.039 38.869 19.271 1.00152.01 ATOM 77 CA ALA H 108 -40.587 38.738 19.310 1.00149.51 ATOM 78 C ALA H 108 -40.014 38.398 17.937 1.00149.62 ATOM 79 O ALA H 108 -38.844 38.664 17.659 1.00149.44 ATOM 80 CB ALA H 108 -40.177 37.687 20.335 1.00130.27 ATOM 81 N LYS H 109 -40.847 37.813 17.081 1.00144.80 ATOM 82 CA LYS H 109 -40.415 37.397 15.750 1.00142.94 ATOM 83 C LYS H 109 -41.104 38.196 14.646 1.00133.64 ATOM 84 O LYS H 109 -40.448 38.741 13.759 1.00134.18 ATOM 85 CB LYS H 109 -40.682 35.903 15.545 1.00142.98 ATOM 86 CG LYS H 109 -39.900 34.984 16.474 1.00140.04 ATOM 87 CD LYS H 109 -38.468 34.797 15.999 1.00139.87 ATOM 88 CE LYS H 109 -37.749 33.749 16.833 1.00136.90 ATOM 89 NZ LYS H 109 -38.464 32.441 16.821 1.00118.08 ATOM 90 N LYS H 110 -42.429 38.259 14.704 1.00126.13 ATOM 91 CA LYS H 110 -43.214 38.915 13.664 1.00133.86 ATOM 92 C LYS H 110 -42.838 40.385 13.501 1.00139.27 ATOM 93 O LYS H 110 -42.782 40.898 12.383 1.00127.13 ATOM 94 CB LYS H 110 -44.709 38.785 13.963 1.00129.89 ATOM 95 CG LYS H 110 -45.619 39.302 12.859 1.00136.50 ATOM 96 CD LYS H 110 -45.557 38.408 11.632 1.00141.88 ATOM 97 CE LYS H 110 -46.512 38.886 10.549 1.00140.42 ATOM 98 NZ LYS H 110 -47.920 38.950 11.032 1.00133.29 ATOM 99 N ASN H 111 -42.581 41.058 14.618 1.00142.62 ATOM 100 CA ASN H 111 -42.268 42.484 14.595 1.00135.93 ATOM 101 C ASN H 111 -40.782 42.785 14.780 1.00134.71 ATOM 102 O ASN H 111 -40.402 43.927 15.034 1.00134.40 ATOM 103 CB ASN H 111 -43.088 43.236 15.647 1.00135.74 ATOM 104 CG ASN H 111 -44.571 43.261 15.325 1.00132.28 ATOM 105 OD1 ASN H 111 -45.174 44.329 15.211 1.00131.30 ATOM 106 ND2 ASN H 111 -45.165 42.084 15.171 1.00130.30 ATOM 107 N VAL H 112 -39.946 41.760 14.656 1.00135.39 ATOM 108 CA VAL H 112 -38.502 41.944 14.766 1.00137.69 ATOM 109 C VAL H 112 -37.919 42.330 13.408 1.00138.75 ATOM 110 O VAL H 112 -36.742 42.097 13.128 1.00131.62 ATOM 111 CB VAL H 112 -37.802 40.680 15.311 1.00131.09 ATOM 112 CG1 VAL H 112 -37.702 39.610 14.233 1.00128.94 ATOM 113 CG2 VAL H 112 -36.423 41.026 15.854 1.00127.38 ATOM 114 N SER H 113 -38.760 42.926 12.568 1.00138.28 ATOM 115 CA SER H 113 -38.348 43.359 11.239 1.00131.22 ATOM 116 C SER H 113 -37.252 44.415 11.324 1.00130.05 ATOM 117 O SER H 113 -37.383 45.404 12.046 1.00127.33 ATOM 118 CB SER H 113 -39.548 43.904 10.461 1.00122.14 ATOM 119 OG SER H 113 -39.158 44.378 9.183 1.00112.79 ATOM 120 N SER H 114 -36.171 44.197 10.582 1.00134.48 ATOM 121 CA SER H 114 -35.049 45.128 10.573 1.00137.26 ATOM 122 C SER H 114 -34.814 45.701 9.178 1.00133.11 ATOM 123 O SER H 114 -34.498 44.971 8.238 1.00123.55 ATOM 124 CB SER H 114 -33.781 44.441 11.086 1.00131.28 ATOM 125 OG SER H 114 -32.691 45.346 11.125 1.00126.67 ATOM 126 N GLU H 119 -33.760 35.404 8.010 1.00115.20 ATOM 127 CA GLU H 119 -34.084 34.883 9.332 1.00134.79 ATOM 128 C GLU H 119 -35.051 35.803 10.070 1.00141.65 ATOM 129 O GLU H 119 -36.040 35.349 10.644 1.00141.36 ATOM 130 CB GLU H 119 -32.812 34.691 10.160 1.00139.49 ATOM 131 CG GLU H 119 -31.935 35.930 10.243 1.00136.00 ATOM 132 CD GLU H 119 -30.886 35.833 11.332 1.00129.96 ATOM 133 OE1 GLU H 119 -31.036 34.975 12.228 1.00129.66 ATOM 134 OE2 GLU H 119 -29.914 36.616 11.295 1.00118.34 ATOM 135 N ALA H 120 -34.755 37.099 10.050 1.00145.33 ATOM 136 CA ALA H 120 -35.588 38.088 10.724 1.00143.65 ATOM 137 C ALA H 120 -36.609 38.692 9.766 1.00145.83 ATOM 138 O ALA H 120 -37.814 38.628 10.009 1.00143.46 ATOM 139 CB ALA H 120 -34.724 39.178 11.342 1.00130.19 ATOM 140 N ALA H 121 -36.121 39.277 8.676 1.00142.33 ATOM 141 CA ALA H 121 -36.994 39.896 7.686 1.00134.87 ATOM 142 C ALA H 121 -37.977 38.880 7.110 1.00138.24 ATOM 143 O ALA H 121 -39.084 39.233 6.702 1.00135.31 ATOM 144 CB ALA H 121 -36.171 40.535 6.573 1.00131.65 ATOM 145 N GLU H 122 -37.566 37.617 7.086 1.00140.55 ATOM 146 CA GLU H 122 -38.392 36.553 6.526 1.00139.38 ATOM 147 C GLU H 122 -39.096 35.739 7.608 1.00135.65 ATOM 148 O GLU H 122 -39.693 34.700 7.324 1.00125.68 ATOM 149 CB GLU H 122 -37.551 35.633 5.638 1.00139.49 ATOM 150 N ALA H 123 -39.023 36.215 8.847 1.00138.39 ATOM 151 CA ALA H 123 -39.675 35.542 9.964 1.00140.06 ATOM 152 C ALA H 123 -41.186 35.742 9.914 1.00145.17 ATOM 153 O ALA H 123 -41.761 36.404 10.776 1.00146.23 ATOM 154 CB ALA H 123 -39.116 36.046 11.288 1.00131.42 ATOM 155 N ALA H 124 -41.824 35.169 8.898 1.00144.67 ATOM 156 CA ALA H 124 -43.269 35.289 8.735 1.00140.04 ATOM 157 C ALA H 124 -43.898 33.960 8.328 1.00138.12 ATOM 158 O ALA H 124 -45.120 33.838 8.254 1.00128.90 ATOM 159 CB ALA H 124 -43.603 36.371 7.718 1.00135.12 ATOM 160 N ILE H 125 -43.055 32.968 8.064 1.00142.66 ATOM 161 CA ILE H 125 -43.524 31.639 7.694 1.00133.28 ATOM 162 C ILE H 125 -43.943 30.857 8.935 1.00129.73 ATOM 163 O ILE H 125 -44.700 29.891 8.851 1.00124.11 ATOM 164 CB ILE H 125 -42.436 30.853 6.935 1.00122.51 ATOM 165 CG1 ILE H 125 -41.894 31.684 5.769 1.00119.33 ATOM 166 CG2 ILE H 125 -42.979 29.522 6.439 1.00129.44 ATOM 167 CD1 ILE H 125 -42.961 32.153 4.803 1.00114.68 ATOM 168 N GLN H 126 -43.447 31.290 10.090 1.00125.69 ATOM 169 CA GLN H 126 -43.754 30.638 11.358 1.00124.20 ATOM 170 C GLN H 126 -45.244 30.689 11.686 1.00130.40 ATOM 171 O GLN H 126 -45.819 29.706 12.156 1.00124.14 ATOM 172 CB GLN H 126 -42.944 31.274 12.491 1.00134.30 ATOM 173 CG GLN H 126 -41.464 30.924 12.472 1.00140.57 ATOM 174 CD GLN H 126 -40.628 31.880 13.302 1.00140.71 ATOM 175 OE1 GLN H 126 -40.542 33.071 12.998 1.00134.98 ATOM 176 NE2 GLN H 126 -39.999 31.361 14.351 1.00131.85 ATOM 177 N VAL H 127 -45.865 31.838 11.435 1.00134.11 ATOM 178 CA VAL H 127 -47.276 32.032 11.758 1.00132.70 ATOM 179 C VAL H 127 -48.192 31.154 10.908 1.00135.05 ATOM 180 O VAL H 127 -49.217 30.668 11.385 1.00126.04 ATOM 181 CB VAL H 127 -47.700 33.509 11.600 1.00122.26 ATOM 182 CG1 VAL H 127 -46.974 34.383 12.610 1.00127.22 ATOM 183 CG2 VAL H 127 -47.439 33.993 10.183 1.00114.90 ATOM 184 N GLU H 128 -47.814 30.950 9.650 1.00135.23 ATOM 185 CA GLU H 128 -48.642 30.194 8.717 1.00130.93 ATOM 186 C GLU H 128 -48.672 28.704 9.045 1.00132.06 ATOM 187 O GLU H 128 -49.607 27.998 8.669 1.00125.49 ATOM 188 CB GLU H 128 -48.155 30.400 7.281 1.00123.24 ATOM 189 CG GLU H 128 -48.035 31.855 6.865 1.00126.65 ATOM 190 CD GLU H 128 -47.715 32.012 5.392 1.00137.26 ATOM 191 OE1 GLU H 128 -48.034 31.089 4.612 1.00135.76 ATOM 192 OE2 GLU H 128 -47.148 33.059 5.012 1.00136.81 ATOM 193 N VAL H 129 -47.650 28.232 9.750 1.00135.24 ATOM 194 CA VAL H 129 -47.515 26.808 10.042 1.00135.50 ATOM 195 C VAL H 129 -48.382 26.365 11.218 1.00130.13 ATOM 196 O VAL H 129 -49.086 25.358 11.139 1.00126.95 ATOM 197 CB VAL H 129 -46.047 26.432 10.333 1.00125.86 ATOM 198 CG1 VAL H 129 -45.926 24.944 10.622 1.00113.60 ATOM 199 CG2 VAL H 129 -45.154 26.827 9.166 1.00119.58 ATOM 200 N LEU H 130 -48.325 27.126 12.306 1.00124.47 ATOM 201 CA LEU H 130 -48.998 26.756 13.548 1.00126.16 ATOM 202 C LEU H 130 -50.511 26.958 13.501 1.00127.00 ATOM 203 O LEU H 130 -51.260 26.227 14.150 1.00122.75 ATOM 204 CB LEU H 130 -48.399 27.534 14.722 1.00124.74 ATOM 205 CG LEU H 130 -46.956 27.168 15.077 1.00113.65 ATOM 206 CD1 LEU H 130 -46.276 28.298 15.834 1.00123.14 ATOM 207 CD2 LEU H 130 -46.914 25.871 15.873 1.00 98.24 ATOM 208 N GLU H 131 -50.956 27.949 12.736 1.00128.75 ATOM 209 CA GLU H 131 -52.378 28.263 12.649 1.00134.48 ATOM 210 C GLU H 131 -53.203 27.039 12.265 1.00132.79 ATOM 211 O GLU H 131 -54.231 26.756 12.879 1.00119.85 ATOM 212 CB GLU H 131 -52.621 29.402 11.654 1.00129.79 ATOM 213 CG GLU H 131 -54.067 29.874 11.589 1.00132.23 ATOM 214 CD GLU H 131 -54.230 31.149 10.783 1.00140.12 ATOM 215 OE1 GLU H 131 -53.207 31.806 10.490 1.00146.05 ATOM 216 OE2 GLU H 131 -55.381 31.498 10.445 1.00133.25 ATOM 217 N ASN H 132 -52.744 26.314 11.250 1.00130.28 ATOM 218 CA ASN H 132 -53.456 25.133 10.772 1.00128.37 ATOM 219 C ASN H 132 -53.083 23.862 11.533 1.00128.46 ATOM 220 O ASN H 132 -53.753 22.836 11.407 1.00128.25 ATOM 221 CB ASN H 132 -53.239 24.937 9.268 1.00126.86 ATOM 222 CG ASN H 132 -51.772 24.837 8.896 1.00133.61 ATOM 223 OD1 ASN H 132 -50.975 25.717 9.222 1.00134.01 ATOM 224 ND2 ASN H 132 -51.410 23.765 8.200 1.00124.94 ATOM 225 N LEU H 133 -52.013 23.935 12.319 1.00124.02 ATOM 226 CA LEU H 133 -51.595 22.807 13.144 1.00123.60 ATOM 227 C LEU H 133 -52.670 22.491 14.176 1.00125.08 ATOM 228 O LEU H 133 -52.911 21.329 14.507 1.00115.44 ATOM 229 CB LEU H 133 -50.271 23.113 13.846 1.00125.32 ATOM 230 CG LEU H 133 -49.737 22.010 14.762 1.00118.42 ATOM 231 CD1 LEU H 133 -49.571 20.712 13.990 1.00110.45 ATOM 232 CD2 LEU H 133 -48.425 22.428 15.405 1.00109.05 ATOM 233 N GLN H 134 -53.307 23.539 14.686 1.00128.19 ATOM 234 CA GLN H 134 -54.419 23.390 15.613 1.00123.36 ATOM 235 C GLN H 134 -55.603 22.764 14.892 1.00123.42 ATOM 236 O GLN H 134 -56.448 22.113 15.507 1.00113.46 ATOM 237 CB GLN H 134 -54.815 24.751 16.183 1.00127.50 ATOM 238 CG GLN H 134 -53.730 25.414 17.009 1.00130.27 ATOM 239 CD GLN H 134 -53.991 26.889 17.237 1.00140.93 ATOM 240 OE1 GLN H 134 -54.455 27.595 16.342 1.00143.44 ATOM 241 NE2 GLN H 134 -53.687 27.365 18.440 1.00122.59 ATOM 242 N SER H 135 -55.653 22.967 13.580 1.00128.66 ATOM 243 CA SER H 135 -56.721 22.419 12.756 1.00120.67 ATOM 244 C SER H 135 -56.455 20.950 12.444 1.00119.57 ATOM 245 O SER H 135 -57.290 20.083 12.701 1.00125.69 ATOM 246 CB SER H 135 -56.852 23.220 11.458 1.00110.59 ATOM 247 OG SER H 135 -56.902 24.613 11.719 1.00106.70 TER