HEADER VIRUS/IMMUNE SYSTEM 26-MAR-14 3J6U TITLE Cryo-EM structure of Dengue virus serotype 3 in complex with human TITLE 2 antibody 5J7 Fab COMPND MOL_ID: 3; COMPND 2 MOLECULE: Fab 5J7 heavy chain; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: variable ; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 3J6U H 1 135 PDB 3J6U 3J6U 1 135 SEQRES 1 H 126 GLN LEU VAL GLN SER GLY ALA GLU LEU ARG LYS PRO GLY SEQRES 2 H 126 SER SER VAL LYS VAL SER CYS ARG ALA SER GLY GLY THR SEQRES 3 H 126 PHE SER SER TYR THR PHE ASN TRP VAL ARG GLN ALA PRO SEQRES 4 H 126 GLY GLN GLY LEU GLU TRP MET GLY GLY PHE ILE PRO VAL SEQRES 5 H 126 PHE ASN THR THR ASN TYR ALA GLN THR PHE GLN GLY ARG SEQRES 6 H 126 VAL THR ILE ALA ALA ASP LYS SER THR SER THR ALA TYR SEQRES 7 H 126 MET GLU LEU ARG SER LEU ARG SER GLU ASP THR ALA ILE SEQRES 8 H 126 TYR TYR CYS ALA ARG ASP LYS GLU LEU LEU PHE SER ARG SEQRES 9 H 126 ALA PHE ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SEQRES 10 H 126 SER SER ALA GLY THR LYS GLY PRO SER ATOM 1 CA GLN H 10 -122.984-163.477-116.856 1.00 0.00 ATOM 2 CA LEU H 11 -126.377-162.508-118.621 1.00 0.00 ATOM 3 CA VAL H 12 -129.306-165.030-118.454 1.00 0.00 ATOM 4 CA GLN H 13 -132.649-164.224-119.980 1.00 0.00 ATOM 5 CA SER H 14 -136.348-165.298-119.710 1.00 0.00 ATOM 6 CA GLY H 15 -137.780-168.079-121.959 1.00 0.00 ATOM 7 CA ALA H 16 -139.548-167.981-125.396 1.00 0.00 ATOM 8 CA GLU H 17 -142.720-165.970-126.030 1.00 0.00 ATOM 9 CA LEU H 18 -145.882-166.234-128.195 1.00 0.00 ATOM 10 CA ARG H 19 -147.483-162.839-128.508 1.00 0.00 ATOM 11 CA LYS H 20 -150.520-161.125-130.308 1.00 0.00 ATOM 12 CA PRO H 21 -151.021-157.760-132.048 1.00 0.00 ATOM 13 CA GLY H 22 -151.557-154.826-129.684 1.00 0.00 ATOM 14 CA SER H 23 -150.088-156.849-126.726 1.00 0.00 ATOM 15 CA SER H 24 -147.040-156.172-124.600 1.00 0.00 ATOM 16 CA VAL H 25 -144.066-158.344-123.780 1.00 0.00 ATOM 17 CA LYS H 26 -141.479-158.171-121.005 1.00 0.00 ATOM 18 CA VAL H 27 -138.111-160.050-121.288 1.00 0.00 ATOM 19 CA SER H 28 -135.942-160.169-118.103 1.00 0.00 ATOM 20 CA CYS H 29 -132.117-160.460-117.885 1.00 0.00 ATOM 21 CA ARG H 30 -130.344-161.525-114.642 1.00 0.00 ATOM 22 CA ALA H 31 -126.703-160.334-114.476 1.00 0.00 ATOM 23 CA SER H 32 -123.837-161.980-112.569 1.00 0.00 ATOM 24 CA GLY H 33 -120.060-162.185-112.599 1.00 0.00 ATOM 25 CA GLY H 34 -119.109-158.435-112.291 1.00 0.00 ATOM 26 CA THR H 35 -119.851-154.910-111.250 1.00 0.00 ATOM 27 CA PHE H 36 -123.494-154.395-111.801 1.00 0.00 ATOM 28 CA SER H 37 -123.721-150.623-110.801 1.00 0.00 ATOM 29 CA SER H 38 -120.997-149.801-113.455 1.00 0.00 ATOM 30 CA TYR H 39 -122.604-151.668-116.255 1.00 0.00 ATOM 31 CA THR H 40 -123.791-150.344-119.592 1.00 0.00 ATOM 32 CA PHE H 41 -126.306-152.473-121.634 1.00 0.00 ATOM 33 CA ASN H 42 -127.782-152.286-125.013 1.00 0.00 ATOM 34 CA TRP H 43 -130.720-154.442-126.081 1.00 0.00 ATOM 35 CA VAL H 44 -130.278-155.858-129.628 1.00 0.00 ATOM 36 CA ARG H 45 -132.693-157.698-131.700 1.00 0.00 ATOM 37 CA GLN H 46 -132.380-159.880-134.738 1.00 0.00 ATOM 38 CA ALA H 47 -135.411-161.073-136.759 1.00 0.00 ATOM 39 CA PRO H 48 -134.902-164.601-138.412 1.00 0.00 ATOM 40 CA GLY H 49 -133.472-164.098-142.066 1.00 0.00 ATOM 41 CA GLN H 50 -132.338-160.509-141.242 1.00 0.00 ATOM 42 CA GLY H 51 -129.593-158.646-139.402 1.00 0.00 ATOM 43 CA LEU H 52 -128.821-157.282-135.934 1.00 0.00 ATOM 44 CA GLU H 53 -130.878-154.200-134.936 1.00 0.00 ATOM 45 CA TRP H 54 -129.871-151.803-132.109 1.00 0.00 ATOM 46 CA MET H 55 -132.908-151.073-129.801 1.00 0.00 ATOM 47 CA GLY H 56 -131.692-148.790-127.034 1.00 0.00 ATOM 48 CA GLY H 57 -129.046-148.567-124.346 1.00 0.00 ATOM 49 CA PHE H 58 -129.095-147.689-120.731 1.00 0.00 ATOM 50 CA ILE H 59 -126.520-146.389-118.302 1.00 0.00 ATOM 51 CA PRO H 60 -127.128-147.771-114.802 1.00 0.00 ATOM 52 CA VAL H 61 -124.463-145.354-113.508 1.00 0.00 ATOM 53 CA PHE H 62 -126.233-142.061-114.470 1.00 0.00 ATOM 54 CA ASN H 63 -129.889-143.487-114.342 1.00 0.00 ATOM 55 CA THR H 64 -130.032-142.683-118.120 1.00 0.00 ATOM 56 CA THR H 65 -131.814-144.467-120.897 1.00 0.00 ATOM 57 CA ASN H 66 -132.089-144.088-124.573 1.00 0.00 ATOM 58 CA TYR H 67 -134.338-145.757-127.080 1.00 0.00 ATOM 59 CA ALA H 68 -134.053-145.849-130.849 1.00 0.00 ATOM 60 CA GLN H 69 -136.580-143.520-132.600 1.00 0.00 ATOM 61 CA THR H 70 -138.284-146.610-134.223 1.00 0.00 ATOM 62 CA PHE H 71 -139.051-147.823-130.757 1.00 0.00 ATOM 63 CA GLN H 72 -139.575-144.408-129.143 1.00 0.00 ATOM 64 CA GLY H 73 -142.938-144.860-127.375 1.00 0.00 ATOM 65 CA ARG H 74 -143.156-148.632-127.501 1.00 0.00 ATOM 66 CA VAL H 75 -140.180-149.787-125.266 1.00 0.00 ATOM 67 CA THR H 76 -139.317-149.139-121.624 1.00 0.00 ATOM 68 CA ILE H 77 -136.115-150.498-119.982 1.00 0.00 ATOM 69 CA ALA H 78 -135.942-150.867-116.100 1.00 0.00 ATOM 70 CA ALA H 79 -133.328-152.310-113.736 1.00 0.00 ATOM 71 CA ASP H 80 -133.526-153.689-110.163 1.00 0.00 ATOM 72 CA LYS H 81 -130.285-153.579-108.189 1.00 0.00 ATOM 73 CA SER H 82 -131.357-155.935-105.369 1.00 0.00 ATOM 74 CA THR H 83 -131.338-159.001-107.670 1.00 0.00 ATOM 75 CA SER H 84 -128.773-157.645-110.356 1.00 0.00 ATOM 76 CA THR H 85 -131.431-157.761-113.046 1.00 0.00 ATOM 77 CA ALA H 86 -132.315-155.735-116.081 1.00 0.00 ATOM 78 CA TYR H 87 -135.798-155.763-117.680 1.00 0.00 ATOM 79 CA MET H 88 -137.134-154.763-121.183 1.00 0.00 ATOM 80 CA GLU H 89 -140.855-154.122-121.911 1.00 0.00 ATOM 81 CA LEU H 90 -141.975-153.670-125.538 1.00 0.00 ATOM 82 CA ARG H 91 -145.660-152.793-126.194 1.00 0.00 ATOM 83 CA SER H 92 -148.060-152.283-129.182 1.00 0.00 ATOM 84 CA LEU H 93 -146.798-155.554-130.732 1.00 0.00 ATOM 85 CA ARG H 94 -147.302-156.393-134.489 1.00 0.00 ATOM 86 CA SER H 95 -146.001-159.314-136.687 1.00 0.00 ATOM 87 CA GLU H 96 -142.751-157.468-137.610 1.00 0.00 ATOM 88 CA ASP H 97 -141.575-157.461-134.014 1.00 0.00 ATOM 89 CA THR H 98 -140.933-161.118-134.341 1.00 0.00 ATOM 90 CA ALA H 99 -137.214-161.722-133.483 1.00 0.00 ATOM 91 CA ILE H 100 -134.706-163.194-130.983 1.00 0.00 ATOM 92 CA TYR H 101 -134.022-160.393-128.449 1.00 0.00 ATOM 93 CA TYR H 102 -130.616-160.117-126.705 1.00 0.00 ATOM 94 CA CYS H 103 -129.496-158.253-123.653 1.00 0.00 ATOM 95 CA ALA H 104 -125.765-157.503-124.025 1.00 0.00 ATOM 96 CA ARG H 105 -123.134-155.420-122.123 1.00 0.00 ATOM 97 CA ASP H 106 -120.585-153.039-123.743 1.00 0.00 ATOM 98 CA LYS H 107 -117.962-150.328-122.813 1.00 0.00 ATOM 99 CA GLU H 108 -115.009-152.766-122.087 1.00 0.00 ATOM 100 CA LEU H 109 -111.542-151.839-121.277 1.00 0.00 ATOM 101 CA LEU H 110 -111.834-148.072-120.584 1.00 0.00 ATOM 102 CA PHE H 111 -111.682-147.106-124.379 1.00 0.00 ATOM 103 CA SER H 112 -113.762-149.986-125.946 1.00 0.00 ATOM 104 CA ARG H 113 -117.412-149.928-127.049 1.00 0.00 ATOM 105 CA ALA H 114 -117.797-153.620-127.982 1.00 0.00 ATOM 106 CA PHE H 115 -120.121-156.109-126.462 1.00 0.00 ATOM 107 CA ASP H 116 -118.013-158.513-124.183 1.00 0.00 ATOM 108 CA ILE H 117 -121.047-160.283-122.675 1.00 0.00 ATOM 109 CA TRP H 118 -124.235-161.534-124.371 1.00 0.00 ATOM 110 CA GLY H 119 -127.459-163.202-123.247 1.00 0.00 ATOM 111 CA GLN H 120 -128.339-166.474-125.002 1.00 0.00 ATOM 112 CA GLY H 121 -131.255-164.613-126.528 1.00 0.00 ATOM 113 CA THR H 122 -135.059-164.782-126.024 1.00 0.00 ATOM 114 CA MET H 123 -137.393-165.569-129.143 1.00 0.00 ATOM 115 CA VAL H 124 -140.506-163.417-129.242 1.00 0.00 ATOM 116 CA THR H 125 -142.987-164.531-131.817 1.00 0.00 ATOM 117 CA VAL H 126 -145.873-162.161-132.863 1.00 0.00 ATOM 118 CA SER H 127 -148.484-163.950-134.954 1.00 0.00 ATOM 119 CA SER H 128 -152.238-164.675-134.756 1.00 0.00 ATOM 120 CA ALA H 129 -151.628-168.441-135.676 1.00 0.00 ATOM 121 CA GLY H 130 -152.154-171.379-133.304 1.00 0.00 ATOM 122 CA THR H 131 -149.355-173.344-131.829 1.00 0.00 ATOM 123 CA LYS H 132 -149.716-176.669-133.848 1.00 0.00 ATOM 124 CA GLY H 133 -148.359-176.899-137.472 1.00 0.00 ATOM 125 CA PRO H 134 -149.731-179.201-140.114 1.00 0.00 ATOM 126 CA SER H 135 -151.066-182.750-139.463 1.00 0.00 TER