HEADER VIRUS/IMMUNE SYSTEM 26-MAR-14 3J6U TITLE Cryo-EM structure of Dengue virus serotype 3 in complex with human TITLE 2 antibody 5J7 Fab COMPND MOL_ID: 4; COMPND 2 MOLECULE: Fab 5J7 light chain; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: variable ; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 3J6U L 1 118 PDB 3J6U 3J6U 1 118 SEQRES 1 L 111 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 111 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 111 GLN SER ILE SER ARG TYR LEU ASN TRP TYR GLN ARG GLU SEQRES 4 L 111 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 111 SER LEU GLN ARG GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 111 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 111 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 111 GLN TYR ILE PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 111 ASP ILE LYS ARG THR VAL ALA ATOM 1 CA ASP L 8 -128.210-141.989-138.598 1.00 0.00 ATOM 2 CA ILE L 9 -124.687-143.376-139.488 1.00 0.00 ATOM 3 CA GLN L 10 -125.679-146.268-141.752 1.00 0.00 ATOM 4 CA MET L 11 -123.280-149.156-142.109 1.00 0.00 ATOM 5 CA THR L 12 -123.009-150.827-145.538 1.00 0.00 ATOM 6 CA GLN L 13 -121.135-154.120-145.265 1.00 0.00 ATOM 7 CA SER L 14 -119.917-155.873-148.433 1.00 0.00 ATOM 8 CA PRO L 15 -119.957-158.527-149.719 1.00 0.00 ATOM 9 CA SER L 16 -123.476-159.048-148.328 1.00 0.00 ATOM 10 CA SER L 17 -122.950-162.749-149.056 1.00 0.00 ATOM 11 CA LEU L 18 -119.811-164.488-150.529 1.00 0.00 ATOM 12 CA SER L 19 -119.118-167.905-151.766 1.00 0.00 ATOM 13 CA ALA L 20 -116.045-169.748-150.470 1.00 0.00 ATOM 14 CA SER L 21 -114.252-173.133-149.781 1.00 0.00 ATOM 15 CA VAL L 22 -111.989-174.237-146.937 1.00 0.00 ATOM 16 CA GLY L 23 -108.447-172.654-147.430 1.00 0.00 ATOM 17 CA ASP L 24 -109.951-169.598-149.081 1.00 0.00 ATOM 18 CA ARG L 25 -108.781-165.995-148.190 1.00 0.00 ATOM 19 CA VAL L 26 -111.774-163.755-147.285 1.00 0.00 ATOM 20 CA THR L 27 -111.603-159.946-147.038 1.00 0.00 ATOM 21 CA ILE L 28 -114.958-158.488-145.759 1.00 0.00 ATOM 22 CA THR L 29 -115.661-154.697-145.771 1.00 0.00 ATOM 23 CA CYS L 30 -117.849-152.409-143.631 1.00 0.00 ATOM 24 CA ARG L 31 -118.437-148.714-144.635 1.00 0.00 ATOM 25 CA ALA L 32 -119.800-145.789-142.610 1.00 0.00 ATOM 26 CA SER L 33 -121.580-142.726-144.147 1.00 0.00 ATOM 27 CA GLN L 34 -119.341-140.440-142.022 1.00 0.00 ATOM 28 CA SER L 35 -116.211-140.657-139.942 1.00 0.00 ATOM 29 CA ILE L 36 -116.453-143.080-137.068 1.00 0.00 ATOM 30 CA SER L 37 -112.568-143.390-136.752 1.00 0.00 ATOM 31 CA ARG L 38 -111.656-146.733-135.116 1.00 0.00 ATOM 32 CA TYR L 39 -114.682-147.651-133.078 1.00 0.00 ATOM 33 CA LEU L 40 -115.959-150.277-135.358 1.00 0.00 ATOM 34 CA ASN L 41 -116.293-153.810-133.889 1.00 0.00 ATOM 35 CA TRP L 42 -116.530-157.297-135.619 1.00 0.00 ATOM 36 CA TYR L 43 -119.022-160.226-134.842 1.00 0.00 ATOM 37 CA GLN L 44 -119.584-163.789-135.898 1.00 0.00 ATOM 38 CA ARG L 45 -123.162-165.289-135.729 1.00 0.00 ATOM 39 CA GLU L 46 -124.540-168.680-136.444 1.00 0.00 ATOM 40 CA PRO L 47 -128.110-169.933-136.984 1.00 0.00 ATOM 41 CA GLY L 48 -129.943-169.782-133.638 1.00 0.00 ATOM 42 CA LYS L 49 -127.091-168.814-131.370 1.00 0.00 ATOM 43 CA ALA L 50 -125.849-165.551-129.833 1.00 0.00 ATOM 44 CA PRO L 51 -123.129-163.308-131.636 1.00 0.00 ATOM 45 CA LYS L 52 -119.455-163.828-130.855 1.00 0.00 ATOM 46 CA LEU L 53 -117.248-160.814-130.527 1.00 0.00 ATOM 47 CA LEU L 54 -114.190-161.231-132.673 1.00 0.00 ATOM 48 CA ILE L 55 -112.327-157.887-133.066 1.00 0.00 ATOM 49 CA TYR L 56 -113.001-154.547-131.253 1.00 0.00 ATOM 50 CA GLY L 57 -111.602-151.105-131.917 1.00 0.00 ATOM 51 CA ALA L 58 -111.113-152.157-135.612 1.00 0.00 ATOM 52 CA SER L 59 -107.981-154.109-134.653 1.00 0.00 ATOM 53 CA SER L 60 -107.730-155.543-131.132 1.00 0.00 ATOM 54 CA LEU L 61 -108.876-159.170-131.233 1.00 0.00 ATOM 55 CA GLN L 62 -110.956-160.465-128.351 1.00 0.00 ATOM 56 CA ARG L 63 -109.871-163.329-126.089 1.00 0.00 ATOM 57 CA GLY L 64 -109.149-166.793-127.549 1.00 0.00 ATOM 58 CA VAL L 65 -110.168-165.616-131.015 1.00 0.00 ATOM 59 CA PRO L 66 -107.562-167.022-133.454 1.00 0.00 ATOM 60 CA SER L 67 -104.986-164.878-135.201 1.00 0.00 ATOM 61 CA ARG L 68 -106.008-165.938-138.704 1.00 0.00 ATOM 62 CA PHE L 69 -108.606-163.134-138.182 1.00 0.00 ATOM 63 CA SER L 70 -107.384-159.536-138.655 1.00 0.00 ATOM 64 CA GLY L 71 -108.776-156.059-138.954 1.00 0.00 ATOM 65 CA SER L 72 -107.739-152.872-140.603 1.00 0.00 ATOM 66 CA GLY L 73 -109.149-149.550-141.808 1.00 0.00 ATOM 67 CA SER L 74 -109.664-145.972-140.699 1.00 0.00 ATOM 68 CA GLY L 75 -112.103-143.105-140.963 1.00 0.00 ATOM 69 CA THR L 76 -115.052-144.357-142.976 1.00 0.00 ATOM 70 CA ASP L 77 -113.834-147.690-144.500 1.00 0.00 ATOM 71 CA PHE L 78 -113.018-150.798-142.342 1.00 0.00 ATOM 72 CA THR L 79 -112.028-154.351-143.320 1.00 0.00 ATOM 73 CA LEU L 80 -111.853-157.763-141.855 1.00 0.00 ATOM 74 CA THR L 81 -109.356-160.373-143.382 1.00 0.00 ATOM 75 CA ILE L 82 -109.413-164.176-143.004 1.00 0.00 ATOM 76 CA SER L 83 -106.104-165.702-144.260 1.00 0.00 ATOM 77 CA SER L 84 -107.266-169.238-144.572 1.00 0.00 ATOM 78 CA LEU L 85 -110.861-170.327-144.128 1.00 0.00 ATOM 79 CA GLN L 86 -111.295-173.375-141.804 1.00 0.00 ATOM 80 CA PRO L 87 -114.616-175.556-141.407 1.00 0.00 ATOM 81 CA GLU L 88 -115.693-173.299-138.568 1.00 0.00 ATOM 82 CA ASP L 89 -115.239-169.879-140.355 1.00 0.00 ATOM 83 CA PHE L 90 -118.544-170.418-142.283 1.00 0.00 ATOM 84 CA ALA L 91 -121.037-168.297-140.338 1.00 0.00 ATOM 85 CA THR L 92 -122.590-164.846-140.944 1.00 0.00 ATOM 86 CA TYR L 93 -120.370-161.976-139.959 1.00 0.00 ATOM 87 CA TYR L 94 -121.435-158.486-138.530 1.00 0.00 ATOM 88 CA CYS L 95 -119.827-155.117-138.107 1.00 0.00 ATOM 89 CA GLN L 96 -121.016-152.697-135.316 1.00 0.00 ATOM 90 CA GLN L 97 -120.580-148.954-135.304 1.00 0.00 ATOM 91 CA SER L 98 -120.550-147.693-131.698 1.00 0.00 ATOM 92 CA GLN L 99 -118.849-144.304-132.030 1.00 0.00 ATOM 93 CA TYR L 100 -122.373-142.725-131.558 1.00 0.00 ATOM 94 CA ILE L 101 -125.245-143.848-129.331 1.00 0.00 ATOM 95 CA PRO L 102 -127.989-144.349-131.019 1.00 0.00 ATOM 96 CA TYR L 103 -125.929-146.856-132.984 1.00 0.00 ATOM 97 CA THR L 104 -125.719-148.958-136.147 1.00 0.00 ATOM 98 CA PHE L 105 -124.877-152.407-137.423 1.00 0.00 ATOM 99 CA GLY L 106 -123.714-153.627-140.822 1.00 0.00 ATOM 100 CA GLN L 107 -126.238-155.645-142.674 1.00 0.00 ATOM 101 CA GLY L 108 -123.991-158.833-142.609 1.00 0.00 ATOM 102 CA THR L 109 -121.778-160.922-144.771 1.00 0.00 ATOM 103 CA LYS L 110 -122.931-164.446-145.163 1.00 0.00 ATOM 104 CA VAL L 111 -119.919-166.650-145.817 1.00 0.00 ATOM 105 CA ASP L 112 -121.484-169.530-147.800 1.00 0.00 ATOM 106 CA ILE L 113 -120.389-172.917-149.051 1.00 0.00 ATOM 107 CA LYS L 114 -119.042-172.867-152.540 1.00 0.00 ATOM 108 CA ARG L 115 -121.797-174.637-154.599 1.00 0.00 ATOM 109 CA THR L 116 -124.005-174.234-157.793 1.00 0.00 ATOM 110 CA VAL L 117 -127.390-176.169-157.349 1.00 0.00 ATOM 111 CA ALA L 118 -129.789-175.398-154.366 1.00 0.00 TER