HEADER RIBOSOME 16-APR-14 3J6X TITLE S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) TITLE 2 IRES, 5 degree rotation (Class II) COMPND MOL_ID: 43; COMPND 2 MOLECULE: 60S ribosomal protein L41; COMPND 3 CHAIN: 81; EXPDTA ELECTRON MICROSCOPY DBREF 3J6X 8 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 81 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 81 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET 8 1 195.512 173.600 236.054 1.00200.00 ATOM 2 CA MET 8 1 196.441 174.150 237.091 1.00200.00 ATOM 3 C MET 8 1 195.737 174.997 238.177 1.00200.00 ATOM 4 O MET 8 1 194.653 175.545 237.945 1.00200.00 ATOM 5 CB MET 8 1 197.542 174.977 236.411 1.00200.00 ATOM 6 CG MET 8 1 197.019 176.034 235.436 1.00200.00 ATOM 7 SD MET 8 1 198.249 177.298 235.003 1.00200.00 ATOM 8 CE MET 8 1 198.104 178.383 236.448 1.00200.00 ATOM 9 N ARG 8 2 196.369 175.062 239.357 1.00200.00 ATOM 10 CA ARG 8 2 195.916 175.801 240.560 1.00200.00 ATOM 11 C ARG 8 2 195.001 177.025 240.307 1.00200.00 ATOM 12 O ARG 8 2 195.362 177.936 239.540 1.00200.00 ATOM 13 CB ARG 8 2 197.158 176.236 241.373 1.00200.00 ATOM 14 CG ARG 8 2 196.928 176.820 242.773 1.00200.00 ATOM 15 CD ARG 8 2 197.381 175.852 243.871 1.00200.00 ATOM 16 NE ARG 8 2 198.332 176.412 244.844 1.00200.00 ATOM 17 CZ ARG 8 2 198.019 176.818 246.077 1.00200.00 ATOM 18 NH1 ARG 8 2 196.768 176.742 246.511 1.00200.00 ATOM 19 NH2 ARG 8 2 198.966 177.283 246.889 1.00200.00 ATOM 20 N ALA 8 3 193.835 177.051 240.969 1.00200.00 ATOM 21 CA ALA 8 3 192.860 178.152 240.817 1.00200.00 ATOM 22 C ALA 8 3 193.293 179.490 241.480 1.00200.00 ATOM 23 O ALA 8 3 192.696 180.549 241.213 1.00200.00 ATOM 24 CB ALA 8 3 191.478 177.715 241.345 1.00200.00 ATOM 25 N LYS 8 4 194.329 179.415 242.330 1.00200.00 ATOM 26 CA LYS 8 4 194.921 180.566 243.060 1.00200.00 ATOM 27 C LYS 8 4 195.790 181.441 242.130 1.00200.00 ATOM 28 O LYS 8 4 195.693 182.677 242.146 1.00200.00 ATOM 29 CB LYS 8 4 195.813 180.077 244.234 1.00200.00 ATOM 30 CG LYS 8 4 195.132 179.916 245.610 1.00200.00 ATOM 31 CD LYS 8 4 195.303 181.136 246.507 1.00200.00 ATOM 32 CE LYS 8 4 194.930 182.415 245.766 1.00200.00 ATOM 33 NZ LYS 8 4 195.039 183.699 246.519 1.00200.00 ATOM 34 N TRP 8 5 196.639 180.771 241.337 1.00200.00 ATOM 35 CA TRP 8 5 197.560 181.415 240.376 1.00200.00 ATOM 36 C TRP 8 5 196.790 181.825 239.121 1.00200.00 ATOM 37 O TRP 8 5 197.339 182.476 238.222 1.00200.00 ATOM 38 CB TRP 8 5 198.674 180.442 239.945 1.00200.00 ATOM 39 CG TRP 8 5 199.709 180.011 240.998 1.00200.00 ATOM 40 CD1 TRP 8 5 200.587 178.958 240.887 1.00200.00 ATOM 41 CD2 TRP 8 5 200.006 180.640 242.262 1.00200.00 ATOM 42 NE1 TRP 8 5 201.408 178.892 241.989 1.00200.00 ATOM 43 CE2 TRP 8 5 201.082 179.907 242.849 1.00200.00 ATOM 44 CE3 TRP 8 5 199.482 181.747 242.956 1.00200.00 ATOM 45 CZ2 TRP 8 5 201.634 180.242 244.097 1.00200.00 ATOM 46 CZ3 TRP 8 5 200.030 182.080 244.196 1.00200.00 ATOM 47 CH2 TRP 8 5 201.101 181.326 244.753 1.00200.00 ATOM 48 N ARG 8 6 195.527 181.407 239.072 1.00200.00 ATOM 49 CA ARG 8 6 194.614 181.672 237.961 1.00200.00 ATOM 50 C ARG 8 6 194.098 183.099 238.152 1.00200.00 ATOM 51 O ARG 8 6 193.916 183.856 237.184 1.00200.00 ATOM 52 CB ARG 8 6 193.469 180.653 238.045 1.00200.00 ATOM 53 CG ARG 8 6 192.413 180.739 236.966 1.00200.00 ATOM 54 CD ARG 8 6 192.739 179.854 235.774 1.00200.00 ATOM 55 NE ARG 8 6 191.574 179.719 234.897 1.00200.00 ATOM 56 CZ ARG 8 6 190.968 180.736 234.284 1.00200.00 ATOM 57 NH1 ARG 8 6 191.413 181.981 234.442 1.00200.00 ATOM 58 NH2 ARG 8 6 189.913 180.508 233.511 1.00200.00 ATOM 59 N LYS 8 7 193.887 183.454 239.422 1.00200.00 ATOM 60 CA LYS 8 7 193.406 184.789 239.784 1.00200.00 ATOM 61 C LYS 8 7 194.578 185.798 239.964 1.00200.00 ATOM 62 O LYS 8 7 194.345 186.987 240.192 1.00200.00 ATOM 63 CB LYS 8 7 192.546 184.687 241.062 1.00200.00 ATOM 64 CG LYS 8 7 191.551 185.825 241.272 1.00200.00 ATOM 65 CD LYS 8 7 190.656 185.560 242.461 1.00200.00 ATOM 66 CE LYS 8 7 190.026 186.857 242.940 1.00200.00 ATOM 67 NZ LYS 8 7 189.121 186.691 244.124 1.00200.00 ATOM 68 N LYS 8 8 195.826 185.314 239.849 1.00200.00 ATOM 69 CA LYS 8 8 197.025 186.167 239.984 1.00200.00 ATOM 70 C LYS 8 8 197.519 186.611 238.591 1.00200.00 ATOM 71 O LYS 8 8 198.111 187.690 238.438 1.00200.00 ATOM 72 CB LYS 8 8 198.146 185.415 240.726 1.00200.00 ATOM 73 CG LYS 8 8 199.333 186.270 241.230 1.00200.00 ATOM 74 CD LYS 8 8 198.984 187.173 242.446 1.00200.00 ATOM 75 CE LYS 8 8 198.171 188.447 242.104 1.00200.00 ATOM 76 NZ LYS 8 8 198.922 189.545 241.420 1.00200.00 ATOM 77 N ARG 8 9 197.296 185.750 237.592 1.00200.00 ATOM 78 CA ARG 8 9 197.657 186.033 236.198 1.00200.00 ATOM 79 C ARG 8 9 196.713 187.109 235.645 1.00200.00 ATOM 80 O ARG 8 9 197.166 188.063 234.975 1.00200.00 ATOM 81 CB ARG 8 9 197.553 184.766 235.326 1.00200.00 ATOM 82 CG ARG 8 9 197.837 185.012 233.820 1.00200.00 ATOM 83 CD ARG 8 9 197.772 183.737 232.957 1.00200.00 ATOM 84 NE ARG 8 9 198.818 182.753 233.273 1.00200.00 ATOM 85 CZ ARG 8 9 200.103 182.845 232.916 1.00200.00 ATOM 86 NH1 ARG 8 9 200.546 183.890 232.217 1.00200.00 ATOM 87 NH2 ARG 8 9 200.947 181.874 233.250 1.00200.00 ATOM 88 N THR 8 10 195.408 186.955 235.905 1.00200.00 ATOM 89 CA THR 8 10 194.413 187.931 235.448 1.00200.00 ATOM 90 C THR 8 10 194.263 189.161 236.371 1.00200.00 ATOM 91 O THR 8 10 193.530 190.102 236.033 1.00200.00 ATOM 92 CB THR 8 10 192.997 187.271 235.185 1.00200.00 ATOM 93 OG1 THR 8 10 192.615 186.436 236.290 1.00200.00 ATOM 94 CG2 THR 8 10 193.032 186.433 233.890 1.00200.00 ATOM 95 N ARG 8 11 194.972 189.151 237.509 1.00200.00 ATOM 96 CA ARG 8 11 194.972 190.274 238.466 1.00200.00 ATOM 97 C ARG 8 11 195.981 191.318 237.947 1.00200.00 ATOM 98 O ARG 8 11 195.754 192.538 238.067 1.00200.00 ATOM 99 CB ARG 8 11 195.384 189.800 239.878 1.00200.00 ATOM 100 CG ARG 8 11 194.997 190.746 241.051 1.00200.00 ATOM 101 CD ARG 8 11 193.500 190.625 241.448 1.00200.00 ATOM 102 NE ARG 8 11 193.099 191.509 242.551 1.00200.00 ATOM 103 CZ ARG 8 11 193.454 191.353 243.827 1.00200.00 ATOM 104 NH1 ARG 8 11 194.226 190.335 244.192 1.00200.00 ATOM 105 NH2 ARG 8 11 193.032 192.219 244.743 1.00200.00 ATOM 106 N ARG 8 12 197.086 190.835 237.365 1.00200.00 ATOM 107 CA ARG 8 12 198.100 191.727 236.799 1.00200.00 ATOM 108 C ARG 8 12 197.629 192.190 235.406 1.00200.00 ATOM 109 O ARG 8 12 198.137 193.191 234.889 1.00200.00 ATOM 110 CB ARG 8 12 199.481 191.029 236.703 1.00200.00 ATOM 111 CG ARG 8 12 200.116 190.694 238.068 1.00200.00 ATOM 112 CD ARG 8 12 201.632 190.472 237.968 1.00200.00 ATOM 113 NE ARG 8 12 202.265 190.436 239.286 1.00200.00 ATOM 114 CZ ARG 8 12 203.578 190.372 239.496 1.00200.00 ATOM 115 NH1 ARG 8 12 204.427 190.335 238.468 1.00200.00 ATOM 116 NH2 ARG 8 12 204.037 190.351 240.744 1.00200.00 ATOM 117 N LEU 8 13 196.669 191.456 234.813 1.00200.00 ATOM 118 CA LEU 8 13 196.122 191.817 233.494 1.00200.00 ATOM 119 C LEU 8 13 195.050 192.917 233.612 1.00200.00 ATOM 120 O LEU 8 13 194.619 193.482 232.603 1.00200.00 ATOM 121 CB LEU 8 13 195.563 190.577 232.755 1.00200.00 ATOM 122 CG LEU 8 13 196.436 189.892 231.679 1.00200.00 ATOM 123 CD1 LEU 8 13 196.698 190.858 230.519 1.00200.00 ATOM 124 CD2 LEU 8 13 197.762 189.433 232.293 1.00200.00 ATOM 125 N LYS 8 14 194.638 193.214 234.848 1.00200.00 ATOM 126 CA LYS 8 14 193.680 194.286 235.123 1.00200.00 ATOM 127 C LYS 8 14 194.499 195.573 235.291 1.00200.00 ATOM 128 O LYS 8 14 194.148 196.625 234.743 1.00200.00 ATOM 129 CB LYS 8 14 192.882 194.028 236.416 1.00200.00 ATOM 130 CG LYS 8 14 191.685 193.085 236.301 1.00200.00 ATOM 131 CD LYS 8 14 190.805 193.146 237.569 1.00200.00 ATOM 132 CE LYS 8 14 191.611 192.893 238.842 1.00200.00 ATOM 133 NZ LYS 8 14 190.862 193.277 240.073 1.00200.00 ATOM 134 N ARG 8 15 195.609 195.476 236.028 1.00200.00 ATOM 135 CA ARG 8 15 196.490 196.636 236.275 1.00200.00 ATOM 136 C ARG 8 15 197.383 196.953 235.047 1.00200.00 ATOM 137 O ARG 8 15 197.942 198.068 234.924 1.00200.00 ATOM 138 CB ARG 8 15 197.332 196.371 237.531 1.00200.00 ATOM 139 CG ARG 8 15 198.117 197.571 238.059 1.00200.00 ATOM 140 CD ARG 8 15 198.533 197.357 239.507 1.00200.00 ATOM 141 NE ARG 8 15 199.091 196.022 239.718 1.00200.00 ATOM 142 CZ ARG 8 15 199.632 195.597 240.858 1.00200.00 ATOM 143 NH1 ARG 8 15 199.697 196.404 241.914 1.00200.00 ATOM 144 NH2 ARG 8 15 200.114 194.360 240.937 1.00200.00 ATOM 145 N LYS 8 16 197.515 195.961 234.155 1.00200.00 ATOM 146 CA LYS 8 16 198.292 196.068 232.906 1.00200.00 ATOM 147 C LYS 8 16 197.491 196.892 231.874 1.00200.00 ATOM 148 O LYS 8 16 198.000 197.866 231.282 1.00200.00 ATOM 149 CB LYS 8 16 198.565 194.662 232.335 1.00200.00 ATOM 150 CG LYS 8 16 199.070 194.635 230.882 1.00200.00 ATOM 151 CD LYS 8 16 199.233 193.198 230.364 1.00200.00 ATOM 152 CE LYS 8 16 199.203 193.138 228.831 1.00200.00 ATOM 153 NZ LYS 8 16 197.876 193.557 228.283 1.00200.00 ATOM 154 N ARG 8 17 196.229 196.488 231.696 1.00200.00 ATOM 155 CA ARG 8 17 195.292 197.130 230.756 1.00200.00 ATOM 156 C ARG 8 17 194.604 198.364 231.379 1.00200.00 ATOM 157 O ARG 8 17 193.641 198.919 230.814 1.00200.00 ATOM 158 CB ARG 8 17 194.226 196.104 230.289 1.00200.00 ATOM 159 CG ARG 8 17 194.801 194.850 229.576 1.00200.00 ATOM 160 CD ARG 8 17 193.698 193.879 229.067 1.00200.00 ATOM 161 NE ARG 8 17 193.061 193.092 230.134 1.00200.00 ATOM 162 CZ ARG 8 17 192.085 192.196 229.950 1.00200.00 ATOM 163 NH1 ARG 8 17 191.604 191.954 228.732 1.00200.00 ATOM 164 NH2 ARG 8 17 191.600 191.520 230.993 1.00200.00 ATOM 165 N ARG 8 18 195.132 198.775 232.534 1.00200.00 ATOM 166 CA ARG 8 18 194.645 199.935 233.296 1.00200.00 ATOM 167 C ARG 8 18 195.546 201.139 232.958 1.00200.00 ATOM 168 O ARG 8 18 195.071 202.289 232.855 1.00200.00 ATOM 169 CB ARG 8 18 194.693 199.616 234.804 1.00200.00 ATOM 170 CG ARG 8 18 193.988 200.606 235.732 1.00200.00 ATOM 171 CD ARG 8 18 193.715 199.959 237.104 1.00200.00 ATOM 172 NE ARG 8 18 192.678 198.921 237.042 1.00200.00 ATOM 173 CZ ARG 8 18 192.592 197.892 237.882 1.00200.00 ATOM 174 NH1 ARG 8 18 193.495 197.765 238.849 1.00200.00 ATOM 175 NH2 ARG 8 18 191.599 197.006 237.767 1.00200.00 ATOM 176 N LYS 8 19 196.837 200.848 232.764 1.00200.00 ATOM 177 CA LYS 8 19 197.810 201.882 232.390 1.00200.00 ATOM 178 C LYS 8 19 197.688 202.202 230.871 1.00200.00 ATOM 179 O LYS 8 19 197.997 203.332 230.420 1.00200.00 ATOM 180 CB LYS 8 19 199.247 201.426 232.737 1.00200.00 ATOM 181 CG LYS 8 19 199.750 201.891 234.122 1.00200.00 ATOM 182 CD LYS 8 19 198.834 201.452 235.272 1.00200.00 ATOM 183 CE LYS 8 19 199.278 202.018 236.622 1.00200.00 ATOM 184 NZ LYS 8 19 200.540 201.420 237.138 1.00200.00 ATOM 185 N VAL 8 20 197.224 201.194 230.111 1.00200.00 ATOM 186 CA VAL 8 20 196.995 201.302 228.661 1.00200.00 ATOM 187 C VAL 8 20 195.684 202.097 228.394 1.00200.00 ATOM 188 O VAL 8 20 195.588 202.847 227.402 1.00200.00 ATOM 189 CB VAL 8 20 196.879 199.899 227.961 1.00200.00 ATOM 190 CG1 VAL 8 20 197.032 200.061 226.439 1.00200.00 ATOM 191 CG2 VAL 8 20 197.935 198.934 228.504 1.00200.00 ATOM 192 N ARG 8 21 194.698 201.951 229.296 1.00200.00 ATOM 193 CA ARG 8 21 193.419 202.671 229.209 1.00200.00 ATOM 194 C ARG 8 21 193.643 204.191 229.355 1.00200.00 ATOM 195 O ARG 8 21 192.843 205.017 228.845 1.00200.00 ATOM 196 CB ARG 8 21 192.426 202.167 230.288 1.00200.00 ATOM 197 CG ARG 8 21 191.270 203.174 230.624 1.00200.00 ATOM 198 CD ARG 8 21 190.353 202.735 231.770 1.00200.00 ATOM 199 NE ARG 8 21 189.756 203.902 232.440 1.00200.00 ATOM 200 CZ ARG 8 21 188.737 203.860 233.304 1.00200.00 ATOM 201 NH1 ARG 8 21 188.275 204.979 233.859 1.00200.00 ATOM 202 NH2 ARG 8 21 188.169 202.701 233.610 1.00200.00 ATOM 203 N ALA 8 22 194.765 204.536 230.005 1.00200.00 ATOM 204 CA ALA 8 22 195.201 205.918 230.276 1.00200.00 ATOM 205 C ALA 8 22 195.724 206.698 229.056 1.00200.00 ATOM 206 O ALA 8 22 195.236 207.799 228.755 1.00200.00 ATOM 207 CB ALA 8 22 196.279 205.924 231.378 1.00200.00 ATOM 208 N ARG 8 23 196.725 206.137 228.373 1.00200.00 ATOM 209 CA ARG 8 23 197.297 206.804 227.201 1.00200.00 ATOM 210 C ARG 8 23 196.276 206.808 226.050 1.00200.00 ATOM 211 O ARG 8 23 196.640 206.935 224.874 1.00200.00 ATOM 212 CB ARG 8 23 198.599 206.114 226.775 1.00200.00 ATOM 213 CG ARG 8 23 199.593 207.007 226.019 1.00200.00 ATOM 214 CD ARG 8 23 200.672 206.157 225.349 1.00200.00 ATOM 215 NE ARG 8 23 201.743 206.927 224.711 1.00200.00 ATOM 216 CZ ARG 8 23 201.565 207.968 223.895 1.00200.00 ATOM 217 NH1 ARG 8 23 202.625 208.581 223.372 1.00200.00 ATOM 218 NH2 ARG 8 23 200.342 208.416 223.610 1.00200.00 ATOM 219 N SER 8 24 194.996 206.662 226.415 1.00200.00 ATOM 220 CA SER 8 24 193.896 206.676 225.450 1.00200.00 ATOM 221 C SER 8 24 192.972 207.905 225.667 1.00200.00 ATOM 222 O SER 8 24 191.743 207.778 225.640 1.00200.00 ATOM 223 CB SER 8 24 193.079 205.367 225.527 1.00200.00 ATOM 224 OG SER 8 24 192.289 205.171 224.359 1.00200.00 ATOM 225 N LYS 8 25 193.583 209.076 225.905 1.00200.00 ATOM 226 CA LYS 8 25 192.845 210.341 226.089 1.00200.00 ATOM 227 C LYS 8 25 193.067 211.300 224.894 1.00200.00 ATOM 228 O LYS 8 25 193.788 210.928 223.936 1.00200.00 ATOM 229 CB LYS 8 25 193.258 211.064 227.396 1.00200.00 ATOM 230 CG LYS 8 25 192.733 210.441 228.708 1.00200.00 ATOM 231 CD LYS 8 25 192.912 211.362 229.941 1.00200.00 ATOM 232 CE LYS 8 25 194.365 211.453 230.433 1.00200.00 ATOM 233 NZ LYS 8 25 194.548 212.347 231.621 1.00200.00 ATOM 234 OXT LYS 8 25 192.508 212.419 224.923 1.00200.00 TER