HEADER RIBOSOME 29-MAY-14 3J78 TITLE Structures of yeast 80S ribosome-tRNA complexes in the rotated and TITLE 2 non-rotated conformations (Class I - non-rotated ribosome with 2 COMPND MOL_ID: 41; COMPND 2 MOLECULE: 60S ribosomal protein L41; COMPND 3 CHAIN: 91; EXPDTA ELECTRON MICROSCOPY DBREF 3J78 9 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 91 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 91 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET 9 1 165.359 142.972 207.169 1.00335.98 ATOM 2 CA MET 9 1 166.438 143.623 207.977 1.00335.91 ATOM 3 C MET 9 1 165.894 144.363 209.209 1.00335.94 ATOM 4 O MET 9 1 164.671 144.449 209.418 1.00336.01 ATOM 5 CB MET 9 1 167.238 144.598 207.094 1.00335.87 ATOM 6 CG MET 9 1 166.374 145.609 206.337 1.00335.91 ATOM 7 SD MET 9 1 167.337 146.829 205.401 1.00335.86 ATOM 8 CE MET 9 1 167.227 148.278 206.497 1.00335.76 ATOM 9 N ARG 9 2 166.815 144.884 210.022 1.00336.55 ATOM 10 CA ARG 9 2 166.476 145.632 211.233 1.00336.56 ATOM 11 C ARG 9 2 165.825 146.970 210.849 1.00336.60 ATOM 12 O ARG 9 2 166.421 147.796 210.143 1.00336.58 ATOM 13 CB ARG 9 2 167.744 145.863 212.069 1.00336.48 ATOM 14 CG ARG 9 2 167.507 146.460 213.452 1.00336.48 ATOM 15 CD ARG 9 2 168.832 146.645 214.189 1.00336.47 ATOM 16 NE ARG 9 2 168.702 147.357 215.464 1.00336.38 ATOM 17 CZ ARG 9 2 168.323 146.806 216.619 1.00336.36 ATOM 18 NH1 ARG 9 2 168.024 145.515 216.690 1.00336.42 ATOM 19 NH2 ARG 9 2 168.246 147.550 217.715 1.00336.28 ATOM 20 N ALA 9 3 164.589 147.158 211.310 1.00330.13 ATOM 21 CA ALA 9 3 163.811 148.363 211.029 1.00330.19 ATOM 22 C ALA 9 3 164.297 149.603 211.778 1.00330.14 ATOM 23 O ALA 9 3 163.728 150.687 211.621 1.00330.15 ATOM 24 CB ALA 9 3 162.336 148.112 211.344 1.00330.26 ATOM 25 N LYS 9 4 165.327 149.434 212.604 1.00330.31 ATOM 26 CA LYS 9 4 165.916 150.538 213.365 1.00330.25 ATOM 27 C LYS 9 4 166.827 151.281 212.382 1.00330.21 ATOM 28 O LYS 9 4 167.042 152.496 212.484 1.00330.20 ATOM 29 CB LYS 9 4 166.744 149.984 214.537 1.00330.19 ATOM 30 CG LYS 9 4 167.534 151.028 215.333 1.00330.12 ATOM 31 CD LYS 9 4 166.718 151.681 216.456 1.00330.12 ATOM 32 CE LYS 9 4 166.531 150.746 217.651 1.00330.08 ATOM 33 NZ LYS 9 4 165.669 149.572 217.347 1.00330.08 ATOM 34 N TRP 9 5 167.339 150.514 211.420 1.00336.97 ATOM 35 CA TRP 9 5 168.226 151.011 210.375 1.00336.92 ATOM 36 C TRP 9 5 167.404 151.632 209.238 1.00336.97 ATOM 37 O TRP 9 5 167.908 152.463 208.474 1.00336.94 ATOM 38 CB TRP 9 5 169.077 149.856 209.827 1.00336.87 ATOM 39 CG TRP 9 5 169.970 149.147 210.841 1.00336.81 ATOM 40 CD1 TRP 9 5 170.540 147.913 210.699 1.00336.79 ATOM 41 CD2 TRP 9 5 170.432 149.654 212.108 1.00336.76 ATOM 42 NE1 TRP 9 5 171.327 147.618 211.788 1.00336.73 ATOM 43 CE2 TRP 9 5 171.279 148.666 212.669 1.00336.72 ATOM 44 CE3 TRP 9 5 170.213 150.844 212.822 1.00336.76 ATOM 45 CZ2 TRP 9 5 171.908 148.832 213.911 1.00336.67 ATOM 46 CZ3 TRP 9 5 170.836 151.009 214.055 1.00336.71 ATOM 47 CH2 TRP 9 5 171.675 150.003 214.588 1.00336.67 ATOM 48 N ARG 9 6 166.142 151.212 209.131 1.00357.64 ATOM 49 CA ARG 9 6 165.233 151.722 208.105 1.00357.69 ATOM 50 C ARG 9 6 164.698 153.086 208.547 1.00357.72 ATOM 51 O ARG 9 6 164.283 153.898 207.715 1.00357.74 ATOM 52 CB ARG 9 6 164.065 150.743 207.905 1.00357.76 ATOM 53 CG ARG 9 6 163.255 150.933 206.610 1.00357.84 ATOM 54 CD ARG 9 6 164.099 150.633 205.360 1.00357.86 ATOM 55 NE ARG 9 6 163.295 150.397 204.151 1.00357.95 ATOM 56 CZ ARG 9 6 162.586 151.323 203.500 1.00357.99 ATOM 57 NH1 ARG 9 6 162.565 152.581 203.930 1.00357.95 ATOM 58 NH2 ARG 9 6 161.895 150.990 202.410 1.00358.08 ATOM 59 N LYS 9 7 164.715 153.328 209.860 1.00327.78 ATOM 60 CA LYS 9 7 164.227 154.589 210.421 1.00327.81 ATOM 61 C LYS 9 7 165.361 155.622 210.472 1.00327.73 ATOM 62 O LYS 9 7 165.127 156.817 210.679 1.00327.75 ATOM 63 CB LYS 9 7 163.650 154.356 211.827 1.00327.83 ATOM 64 CG LYS 9 7 162.785 155.504 212.358 1.00327.86 ATOM 65 CD LYS 9 7 162.155 155.167 213.706 1.00327.85 ATOM 66 CE LYS 9 7 161.206 156.271 214.173 1.00327.89 ATOM 67 NZ LYS 9 7 160.544 155.946 215.475 1.00327.93 ATOM 68 N LYS 9 8 166.590 155.144 210.290 1.00328.98 ATOM 69 CA LYS 9 8 167.774 156.001 210.280 1.00328.91 ATOM 70 C LYS 9 8 167.989 156.452 208.833 1.00328.91 ATOM 71 O LYS 9 8 168.481 157.556 208.570 1.00328.88 ATOM 72 CB LYS 9 8 169.004 155.220 210.771 1.00328.83 ATOM 73 CG LYS 9 8 170.337 155.958 210.604 1.00328.76 ATOM 74 CD LYS 9 8 171.528 155.125 211.079 1.00328.68 ATOM 75 CE LYS 9 8 171.599 155.042 212.604 1.00328.64 ATOM 76 NZ LYS 9 8 171.872 156.366 213.255 1.00328.60 ATOM 77 N ARG 9 9 167.604 155.575 207.906 1.00328.15 ATOM 78 CA ARG 9 9 167.713 155.825 206.473 1.00328.15 ATOM 79 C ARG 9 9 166.832 157.022 206.101 1.00328.20 ATOM 80 O ARG 9 9 167.316 158.019 205.552 1.00328.18 ATOM 81 CB ARG 9 9 167.260 154.578 205.697 1.00328.19 ATOM 82 CG ARG 9 9 167.351 154.687 204.176 1.00328.16 ATOM 83 CD ARG 9 9 166.698 153.485 203.479 1.00328.22 ATOM 84 NE ARG 9 9 167.394 152.217 203.723 1.00328.21 ATOM 85 CZ ARG 9 9 168.480 151.800 203.070 1.00328.15 ATOM 86 NH1 ARG 9 9 169.024 152.542 202.112 1.00328.08 ATOM 87 NH2 ARG 9 9 169.027 150.628 203.377 1.00328.16 ATOM 88 N THR 9 10 165.541 156.910 206.419 1.00335.22 ATOM 89 CA THR 9 10 164.552 157.947 206.141 1.00335.28 ATOM 90 C THR 9 10 164.791 159.227 206.940 1.00335.25 ATOM 91 O THR 9 10 164.456 160.320 206.482 1.00335.27 ATOM 92 CB THR 9 10 163.108 157.447 206.451 1.00335.37 ATOM 93 OG1 THR 9 10 162.979 157.159 207.854 1.00335.41 ATOM 94 CG2 THR 9 10 162.791 156.188 205.637 1.00335.38 ATOM 95 N ARG 9 11 165.362 159.090 208.134 1.00339.50 ATOM 96 CA ARG 9 11 165.633 160.243 208.983 1.00339.47 ATOM 97 C ARG 9 11 166.547 161.241 208.269 1.00339.41 ATOM 98 O ARG 9 11 166.198 162.418 208.121 1.00339.42 ATOM 99 CB ARG 9 11 166.273 159.794 210.305 1.00339.42 ATOM 100 CG ARG 9 11 165.570 160.324 211.558 1.00339.47 ATOM 101 CD ARG 9 11 164.124 159.836 211.639 1.00339.55 ATOM 102 NE ARG 9 11 163.448 160.287 212.856 1.00339.59 ATOM 103 CZ ARG 9 11 163.679 159.804 214.075 1.00339.57 ATOM 104 NH1 ARG 9 11 164.575 158.839 214.257 1.00339.49 ATOM 105 NH2 ARG 9 11 163.018 160.297 215.117 1.00339.61 ATOM 106 N ARG 9 12 167.704 160.767 207.806 1.00327.88 ATOM 107 CA ARG 9 12 168.661 161.633 207.113 1.00327.82 ATOM 108 C ARG 9 12 168.221 161.991 205.694 1.00327.87 ATOM 109 O ARG 9 12 168.639 163.017 205.151 1.00327.85 ATOM 110 CB ARG 9 12 170.043 160.963 207.066 1.00327.76 ATOM 111 CG ARG 9 12 170.727 160.833 208.421 1.00327.70 ATOM 112 CD ARG 9 12 172.076 160.120 208.313 1.00327.66 ATOM 113 NE ARG 9 12 172.719 159.991 209.622 1.00327.59 ATOM 114 CZ ARG 9 12 173.868 159.354 209.851 1.00327.57 ATOM 115 NH1 ARG 9 12 174.530 158.768 208.856 1.00327.60 ATOM 116 NH2 ARG 9 12 174.359 159.299 211.087 1.00327.51 ATOM 117 N LEU 9 13 167.373 161.150 205.104 1.00330.70 ATOM 118 CA LEU 9 13 166.890 161.372 203.742 1.00330.75 ATOM 119 C LEU 9 13 165.854 162.497 203.684 1.00330.79 ATOM 120 O LEU 9 13 165.760 163.205 202.678 1.00330.80 ATOM 121 CB LEU 9 13 166.306 160.067 203.173 1.00330.81 ATOM 122 CG LEU 9 13 166.595 159.643 201.716 1.00330.86 ATOM 123 CD1 LEU 9 13 165.736 160.452 200.749 1.00330.94 ATOM 124 CD2 LEU 9 13 168.092 159.798 201.406 1.00330.82 ATOM 125 N LYS 9 14 165.083 162.662 204.759 1.00337.71 ATOM 126 CA LYS 9 14 164.078 163.726 204.825 1.00337.76 ATOM 127 C LYS 9 14 164.772 165.053 205.140 1.00337.70 ATOM 128 O LYS 9 14 164.382 166.111 204.634 1.00337.72 ATOM 129 CB LYS 9 14 163.038 163.425 205.914 1.00337.80 ATOM 130 CG LYS 9 14 162.162 162.203 205.650 1.00337.89 ATOM 131 CD LYS 9 14 161.145 161.990 206.777 1.00337.94 ATOM 132 CE LYS 9 14 161.828 161.745 208.129 1.00337.89 ATOM 133 NZ LYS 9 14 160.851 161.572 209.249 1.00337.94 ATOM 134 N ARG 9 15 165.806 164.978 205.978 1.00349.00 ATOM 135 CA ARG 9 15 166.585 166.145 206.391 1.00348.94 ATOM 136 C ARG 9 15 167.422 166.659 205.210 1.00348.91 ATOM 137 O ARG 9 15 167.688 167.859 205.088 1.00348.89 ATOM 138 CB ARG 9 15 167.482 165.748 207.575 1.00348.87 ATOM 139 CG ARG 9 15 168.206 166.900 208.267 1.00348.80 ATOM 140 CD ARG 9 15 168.726 166.486 209.648 1.00348.75 ATOM 141 NE ARG 9 15 169.551 165.276 209.606 1.00348.73 ATOM 142 CZ ARG 9 15 170.113 164.703 210.670 1.00348.69 ATOM 143 NH1 ARG 9 15 169.950 165.224 211.884 1.00348.66 ATOM 144 NH2 ARG 9 15 170.836 163.599 210.522 1.00348.69 ATOM 145 N LYS 9 16 167.822 165.732 204.342 1.00351.00 ATOM 146 CA LYS 9 16 168.613 166.036 203.151 1.00350.98 ATOM 147 C LYS 9 16 167.768 166.817 202.138 1.00351.05 ATOM 148 O LYS 9 16 168.203 167.850 201.614 1.00351.03 ATOM 149 CB LYS 9 16 169.120 164.721 202.534 1.00350.96 ATOM 150 CG LYS 9 16 169.872 164.843 201.205 1.00350.87 ATOM 151 CD LYS 9 16 170.364 163.470 200.728 1.00350.85 ATOM 152 CE LYS 9 16 171.097 163.536 199.385 1.00350.79 ATOM 153 NZ LYS 9 16 170.213 163.911 198.245 1.00350.81 ATOM 154 N ARG 9 17 166.556 166.321 201.886 1.00330.94 ATOM 155 CA ARG 9 17 165.624 166.934 200.933 1.00331.01 ATOM 156 C ARG 9 17 164.942 168.176 201.513 1.00331.02 ATOM 157 O ARG 9 17 164.178 168.858 200.826 1.00331.04 ATOM 158 CB ARG 9 17 164.545 165.919 200.515 1.00331.09 ATOM 159 CG ARG 9 17 165.072 164.549 200.073 1.00331.08 ATOM 160 CD ARG 9 17 163.969 163.690 199.430 1.00331.15 ATOM 161 NE ARG 9 17 162.816 163.455 200.307 1.00331.21 ATOM 162 CZ ARG 9 17 161.653 162.934 199.907 1.00331.25 ATOM 163 NH1 ARG 9 17 161.469 162.586 198.636 1.00331.25 ATOM 164 NH2 ARG 9 17 160.666 162.763 200.778 1.00331.30 ATOM 165 N ARG 9 18 165.228 168.454 202.781 1.00348.95 ATOM 166 CA ARG 9 18 164.660 169.593 203.491 1.00348.95 ATOM 167 C ARG 9 18 165.462 170.855 203.202 1.00348.88 ATOM 168 O ARG 9 18 164.902 171.946 203.036 1.00348.91 ATOM 169 CB ARG 9 18 164.670 169.305 204.992 1.00348.92 ATOM 170 CG ARG 9 18 164.118 170.404 205.877 1.00348.99 ATOM 171 CD ARG 9 18 163.949 169.867 207.284 1.00348.96 ATOM 172 NE ARG 9 18 163.193 168.614 207.259 1.00348.97 ATOM 173 CZ ARG 9 18 162.876 167.893 208.333 1.00348.92 ATOM 174 NH1 ARG 9 18 163.247 168.291 209.543 1.00348.86 ATOM 175 NH2 ARG 9 18 162.185 166.766 208.194 1.00348.93 ATOM 176 N LYS 9 19 166.779 170.686 203.140 1.00341.88 ATOM 177 CA LYS 9 19 167.701 171.785 202.876 1.00341.81 ATOM 178 C LYS 9 19 167.787 172.072 201.370 1.00341.84 ATOM 179 O LYS 9 19 168.225 173.153 200.949 1.00341.85 ATOM 180 CB LYS 9 19 169.083 171.438 203.456 1.00341.73 ATOM 181 CG LYS 9 19 169.156 171.525 204.995 1.00341.66 ATOM 182 CD LYS 9 19 168.140 170.618 205.701 1.00341.65 ATOM 183 CE LYS 9 19 168.079 170.872 207.215 1.00341.58 ATOM 184 NZ LYS 9 19 169.358 170.581 207.942 1.00341.50 ATOM 185 N VAL 9 20 167.346 171.098 200.573 1.00326.41 ATOM 186 CA VAL 9 20 167.336 171.209 199.112 1.00326.44 ATOM 187 C VAL 9 20 166.100 172.003 198.661 1.00326.51 ATOM 188 O VAL 9 20 166.095 172.616 197.584 1.00326.52 ATOM 189 CB VAL 9 20 167.311 169.802 198.443 1.00326.48 ATOM 190 CG1 VAL 9 20 167.350 169.942 196.924 1.00326.48 ATOM 191 CG2 VAL 9 20 168.493 168.966 198.922 1.00326.43 ATOM 192 N ARG 9 21 165.060 171.994 199.497 1.00320.93 ATOM 193 CA ARG 9 21 163.822 172.713 199.202 1.00321.01 ATOM 194 C ARG 9 21 163.961 174.169 199.668 1.00320.98 ATOM 195 O ARG 9 21 163.204 175.050 199.246 1.00321.02 ATOM 196 CB ARG 9 21 162.642 172.034 199.908 1.00321.07 ATOM 197 CG ARG 9 21 161.316 172.181 199.177 1.00321.15 ATOM 198 CD ARG 9 21 160.168 171.621 199.999 1.00321.22 ATOM 199 NE ARG 9 21 158.953 171.494 199.201 1.00321.30 ATOM 200 CZ ARG 9 21 157.761 171.163 199.686 1.00321.36 ATOM 201 NH1 ARG 9 21 156.722 171.072 198.867 1.00321.42 ATOM 202 NH2 ARG 9 21 157.607 170.932 200.985 1.00321.37 ATOM 203 N ALA 9 22 164.944 174.401 200.539 1.00324.20 ATOM 204 CA ALA 9 22 165.240 175.730 201.072 1.00324.18 ATOM 205 C ALA 9 22 166.125 176.496 200.081 1.00324.13 ATOM 206 O ALA 9 22 166.328 177.710 200.212 1.00324.13 ATOM 207 CB ALA 9 22 165.943 175.604 202.427 1.00324.12 ATOM 208 N ARG 9 23 166.658 175.768 199.098 1.00334.41 ATOM 209 CA ARG 9 23 167.505 176.356 198.060 1.00334.38 ATOM 210 C ARG 9 23 166.655 177.043 196.982 1.00334.44 ATOM 211 O ARG 9 23 167.187 177.737 196.102 1.00334.41 ATOM 212 CB ARG 9 23 168.385 175.279 197.409 1.00334.36 ATOM 213 CG ARG 9 23 169.554 174.821 198.266 1.00334.27 ATOM 214 CD ARG 9 23 170.437 173.824 197.522 1.00334.27 ATOM 215 NE ARG 9 23 171.851 174.050 197.814 1.00334.18 ATOM 216 CZ ARG 9 23 172.547 175.104 197.389 1.00334.15 ATOM 217 NH1 ARG 9 23 173.825 175.225 197.714 1.00334.07 ATOM 218 NH2 ARG 9 23 171.973 176.033 196.631 1.00334.20 ATOM 219 N SER 9 24 165.338 176.838 197.066 1.00344.45 ATOM 220 CA SER 9 24 164.363 177.412 196.132 1.00344.52 ATOM 221 C SER 9 24 163.551 178.557 196.768 1.00344.58 ATOM 222 O SER 9 24 162.578 179.044 196.175 1.00344.65 ATOM 223 CB SER 9 24 163.400 176.318 195.624 1.00344.57 ATOM 224 OG SER 9 24 164.050 175.378 194.781 1.00344.64 ATOM 225 N LYS 9 25 163.955 178.975 197.971 1.00365.67 ATOM 226 CA LYS 9 25 163.284 180.065 198.694 1.00365.73 ATOM 227 C LYS 9 25 164.230 181.250 198.919 1.00365.76 ATOM 228 O LYS 9 25 165.420 181.142 198.541 1.00365.72 ATOM 229 CB LYS 9 25 162.759 179.589 200.054 1.00365.69 ATOM 230 CG LYS 9 25 161.757 178.446 200.021 1.00365.68 ATOM 231 CD LYS 9 25 161.274 178.125 201.431 1.00365.65 ATOM 232 CE LYS 9 25 162.429 177.744 202.362 1.00365.57 ATOM 233 NZ LYS 9 25 161.968 177.462 203.757 1.00365.53 ATOM 234 OXT LYS 9 25 163.777 182.273 199.483 1.00356.83 TER