HEADER VIRUS/IMMUNE SYSTEM 13-OCT-14 3J8D TITLE Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5 COMPND MOL_ID: 2; COMPND 2 MOLECULE: antibody E111 Fab fragment; COMPND 3 CHAIN: A, D; EXPDTA ELECTRON MICROSCOPY DBREF 3J8D A 396 819 PDB 3J8D 3J8D 396 819 SEQRES 1 A 117 LYS GLN VAL GLN LEU LEU GLN PRO GLY ALA GLU LEU VAL SEQRES 2 A 117 LYS PRO GLY ALA SER MET LYS LEU SER CYS LYS ALA SER SEQRES 3 A 117 GLY TYR THR PHE THR ASN TRP TRP MET HIS TRP VAL ARG SEQRES 4 A 117 LEU ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE SEQRES 5 A 117 ASP PRO ASN SER ASP VAL ASN LYS TYR ASN GLU LYS PHE SEQRES 6 A 117 GLU ASN ARG ALA SER LEU THR VAL ASP LYS HIS SER SER SEQRES 7 A 117 THR ALA TYR MET GLN LEU THR SER GLU ASP SER ALA ILE SEQRES 8 A 117 TYR TYR CYS ALA ARG TRP PHE PHE PRO TRP TYR PHE ASP SEQRES 9 A 117 VAL TRP GLY THR GLY THR THR VAL THR VAL SER ARG ALA ATOM 1 CA LYS A 502 -80.112-169.757-225.740 1.00 86.80 ATOM 2 CA GLN A 608 -110.206-154.067-211.286 1.00 89.43 ATOM 3 CA VAL A 609 -107.218-152.235-209.820 1.00 85.67 ATOM 4 CA GLN A 610 -105.572-149.581-211.997 1.00 85.06 ATOM 5 CA LEU A 611 -102.760-147.111-211.325 1.00 78.74 ATOM 6 CA LEU A 612 -102.717-144.657-214.234 1.00 78.30 ATOM 7 CA GLN A 613 -99.800-142.378-215.079 1.00 79.71 ATOM 8 CA PRO A 614 -99.279-139.937-217.965 1.00 76.68 ATOM 9 CA GLY A 615 -97.253-141.425-220.805 1.00 71.42 ATOM 10 CA ALA A 616 -94.581-138.752-221.130 1.00 70.26 ATOM 11 CA GLU A 617 -93.153-135.540-219.691 1.00 75.91 ATOM 12 CA LEU A 618 -90.754-133.013-221.195 1.00 71.78 ATOM 13 CA VAL A 619 -89.185-130.733-218.597 1.00 75.28 ATOM 14 CA LYS A 620 -86.318-128.239-218.586 1.00 69.79 ATOM 15 CA PRO A 621 -83.189-128.691-216.448 1.00 66.29 ATOM 16 CA GLY A 622 -83.487-127.020-213.040 1.00 63.83 ATOM 17 CA ALA A 623 -87.265-126.843-213.458 1.00 65.42 ATOM 18 CA SER A 624 -89.840-128.819-211.484 1.00 66.89 ATOM 19 CA MET A 625 -92.285-131.562-212.472 1.00 67.13 ATOM 20 CA LYS A 626 -95.446-133.053-210.962 1.00 74.00 ATOM 21 CA LEU A 627 -96.362-136.628-211.896 1.00 72.31 ATOM 22 CA SER A 628 -99.813-138.100-211.291 1.00 75.77 ATOM 23 CA CYS A 629 -100.995-141.629-210.484 1.00 79.90 ATOM 24 CA LYS A 630 -104.753-142.178-210.643 1.00 85.33 ATOM 25 CA ALA A 631 -105.887-145.170-208.632 1.00 87.49 ATOM 26 CA SER A 632 -109.120-147.057-209.260 1.00 85.99 ATOM 27 CA GLY A 633 -110.761-150.352-208.356 1.00 94.58 ATOM 28 CA TYR A 634 -109.960-150.069-204.662 1.00 92.85 ATOM 29 CA THR A 635 -110.033-147.778-201.629 1.00 96.58 ATOM 30 CA PHE A 636 -107.251-145.308-202.437 1.00 88.65 ATOM 31 CA THR A 637 -106.711-144.361-198.784 1.00 89.98 ATOM 32 CA ASN A 638 -106.422-148.011-197.706 1.00 92.18 ATOM 33 CA TRP A 639 -102.987-148.543-199.255 1.00 80.95 ATOM 34 CA TRP A 640 -99.679-146.690-199.201 1.00 79.66 ATOM 35 CA MET A 641 -98.263-145.402-202.478 1.00 70.37 ATOM 36 CA HIS A 642 -94.585-145.607-203.396 1.00 70.37 ATOM 37 CA TRP A 643 -92.617-144.057-206.238 1.00 67.53 ATOM 38 CA VAL A 644 -89.767-145.771-208.102 1.00 63.96 ATOM 39 CA ARG A 645 -87.772-144.761-211.180 1.00 62.44 ATOM 40 CA LEU A 646 -85.977-146.801-213.833 1.00 64.36 ATOM 41 CA ARG A 647 -82.905-145.282-215.466 1.00 65.93 ATOM 42 CA PRO A 648 -81.290-146.782-218.596 1.00 72.98 ATOM 43 CA GLY A 649 -78.492-149.133-217.543 1.00 80.07 ATOM 44 CA ARG A 650 -78.805-147.899-213.964 1.00 75.40 ATOM 45 CA GLY A 651 -81.621-150.062-212.617 1.00 74.74 ATOM 46 CA LEU A 652 -84.533-149.159-210.360 1.00 71.24 ATOM 47 CA GLU A 653 -84.367-146.438-207.707 1.00 61.88 ATOM 48 CA TRP A 654 -86.725-145.879-204.773 1.00 65.32 ATOM 49 CA ILE A 655 -87.910-142.307-204.245 1.00 60.61 ATOM 50 CA GLY A 656 -90.400-142.406-201.381 1.00 64.64 ATOM 51 CA ARG A 657 -93.734-143.509-199.941 1.00 67.34 ATOM 52 CA ILE A 658 -96.889-141.880-198.579 1.00 69.94 ATOM 53 CA ASP A 659A -99.982-143.000-196.655 1.00 79.24 ATOM 54 CA PRO A 659B -102.939-141.336-198.463 1.00 78.20 ATOM 55 CA ASN A 660 -105.143-141.802-195.385 1.00 89.93 ATOM 56 CA SER A 661 -103.047-139.715-193.006 1.00 81.12 ATOM 57 CA ASP A 662 -100.670-137.980-195.444 1.00 79.32 ATOM 58 CA VAL A 663 -97.752-139.457-193.491 1.00 74.35 ATOM 59 CA ASN A 664 -94.714-139.864-195.748 1.00 70.49 ATOM 60 CA LYS A 665 -91.061-140.876-196.043 1.00 67.77 ATOM 61 CA TYR A 666 -88.439-139.858-198.583 1.00 63.88 ATOM 62 CA ASN A 667 -85.207-141.344-199.841 1.00 63.19 ATOM 63 CA GLU A 668 -82.583-139.095-198.264 1.00 68.48 ATOM 64 CA LYS A 669 -80.968-138.654-201.691 1.00 64.72 ATOM 65 CA PHE A 670 -84.175-136.978-202.862 1.00 61.24 ATOM 66 CA GLU A 671 -85.355-135.473-199.575 1.00 65.32 ATOM 67 CA ASN A 672 -84.335-131.893-200.359 1.00 71.03 ATOM 68 CA ARG A 673 -85.701-132.245-203.876 1.00 65.04 ATOM 69 CA ALA A 674 -88.938-134.239-203.728 1.00 65.08 ATOM 70 CA SER A 675 -92.511-133.873-202.474 1.00 67.03 ATOM 71 CA LEU A 676 -95.193-136.562-202.158 1.00 71.70 ATOM 72 CA THR A 677 -98.812-135.421-202.016 1.00 76.82 ATOM 73 CA VAL A 678 -102.254-136.864-202.687 1.00 79.12 ATOM 74 CA ASP A 679 -105.729-135.896-203.830 1.00 89.75 ATOM 75 CA LYS A 680 -108.212-138.235-202.137 1.00 88.62 ATOM 76 CA HIS A 681 -111.168-136.852-204.115 1.00 98.33 ATOM 77 CA SER A 682 -109.792-138.110-207.426 1.00 93.34 ATOM 78 CA SER A 683 -107.929-141.039-205.848 1.00 88.48 ATOM 79 CA THR A 684 -104.735-139.652-207.331 1.00 84.08 ATOM 80 CA ALA A 685 -101.252-139.551-205.842 1.00 79.24 ATOM 81 CA TYR A 686 -98.736-136.929-206.933 1.00 74.66 ATOM 82 CA MET A 687 -94.957-136.705-206.855 1.00 71.33 ATOM 83 CA GLN A 688 -93.091-133.464-207.446 1.00 67.37 ATOM 84 CA LEU A 689 -89.385-133.201-208.207 1.00 64.76 ATOM 85 CA THR A 690 -81.104-132.797-214.479 1.00 63.18 ATOM 86 CA SER A 691 -80.407-135.204-217.345 1.00 64.69 ATOM 87 CA GLU A 692 -79.602-137.749-214.633 1.00 65.10 ATOM 88 CA ASP A 693 -83.305-137.661-213.750 1.00 63.02 ATOM 89 CA SER A 694 -84.383-138.849-217.187 1.00 63.02 ATOM 90 CA ALA A 695 -86.098-142.160-216.437 1.00 62.03 ATOM 91 CA ILE A 696 -89.372-144.081-216.427 1.00 63.46 ATOM 92 CA TYR A 697 -91.310-143.210-213.281 1.00 63.68 ATOM 93 CA TYR A 698 -93.677-145.759-211.760 1.00 67.05 ATOM 94 CA CYS A 699 -96.076-145.431-208.878 1.00 70.63 ATOM 95 CA ALA A 700 -96.703-148.659-207.003 1.00 72.98 ATOM 96 CA ARG A 701 -99.205-149.855-204.433 1.00 76.89 ATOM 97 CA TRP A 702 -97.664-151.263-201.265 1.00 76.06 ATOM 98 CA PHE A 703 -98.808-154.702-200.215 1.00 81.40 ATOM 99 CA PHE A 704 -98.390-153.848-196.551 1.00 82.01 ATOM 100 CA PRO A 705 -95.937-154.388-195.155 1.00 78.58 ATOM 101 CA TRP A 706 -94.096-156.280-197.890 1.00 78.46 ATOM 102 CA TYR A 707A -93.941-155.901-201.656 1.00 77.16 ATOM 103 CA PHE A 707B -95.423-153.806-204.446 1.00 77.27 ATOM 104 CA ASP A 708 -98.479-155.629-205.783 1.00 80.08 ATOM 105 CA VAL A 709 -99.721-153.198-208.444 1.00 81.56 ATOM 106 CA TRP A 710 -97.528-151.039-210.677 1.00 73.82 ATOM 107 CA GLY A 711 -98.510-147.876-212.516 1.00 75.48 ATOM 108 CA THR A 712 -98.468-147.552-216.304 1.00 71.99 ATOM 109 CA GLY A 713 -95.245-145.560-216.026 1.00 69.87 ATOM 110 CA THR A 714 -94.289-142.041-217.072 1.00 70.75 ATOM 111 CA THR A 715 -91.321-141.574-219.381 1.00 65.80 ATOM 112 CA VAL A 716 -89.667-138.397-218.136 1.00 65.11 ATOM 113 CA THR A 717 -87.193-136.459-220.258 1.00 66.87 ATOM 114 CA VAL A 718 -85.278-133.568-218.743 1.00 65.50 ATOM 115 CA SER A 719 -84.285-131.449-221.723 1.00 70.51 ATOM 116 CA ARG A 503 -87.120-177.346-221.224 1.00 85.70 ATOM 117 CA ALA A 504 -86.802-179.449-224.369 1.00 85.12 TER