HEADER VIRUS/IMMUNE SYSTEM 13-OCT-14 3J8D TITLE Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5 COMPND MOL_ID: 2; COMPND 2 MOLECULE: antibody E111 Fab fragment; COMPND 3 CHAIN: A, D; EXPDTA ELECTRON MICROSCOPY DBREF 3J8D A 396 819 PDB 3J8D 3J8D 396 819 SEQRES 1 A 106 ASN ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 A 106 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 A 106 GLU SER VAL ASP SER PHE ILE TYR TRP TYR GLN GLN LYS SEQRES 4 A 106 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR LEU ALA SER SEQRES 5 A 106 ASN LEU GLU SER GLY VAL PRO ALA ARG PHE SER GLY SER SEQRES 6 A 106 GLY SER GLU THR ASP PHE THR LEU THR ILE ASP SER VAL SEQRES 7 A 106 GLU THR ASP ASP ALA ALA THR TYR TYR CYS GLN GLN ASN SEQRES 8 A 106 ASN GLU ASP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 106 GLU ILE ATOM 1 CA ASN A 396 -78.186-148.309-196.348 1.00 80.29 ATOM 2 CA ILE A 397 -78.408-152.004-197.202 1.00 76.45 ATOM 3 CA VAL A 398 -76.609-152.549-200.515 1.00 83.52 ATOM 4 CA LEU A 399 -77.784-155.318-202.848 1.00 85.00 ATOM 5 CA THR A 400 -75.289-156.825-205.292 1.00 90.56 ATOM 6 CA GLN A 401 -76.508-159.243-207.960 1.00 95.33 ATOM 7 CA SER A 402 -74.474-161.898-209.756 1.00 99.11 ATOM 8 CA PRO A 403 -73.875-162.391-212.518 1.00 99.11 ATOM 9 CA ALA A 404 -74.514-159.208-214.516 1.00 98.42 ATOM 10 CA SER A 405 -75.967-161.278-217.351 1.00 99.60 ATOM 11 CA LEU A 406 -76.204-164.899-218.486 1.00101.17 ATOM 12 CA ALA A 407 -77.603-166.986-221.338 1.00 96.63 ATOM 13 CA VAL A 408 -79.347-170.301-220.687 1.00 95.44 ATOM 14 CA SER A 409 -80.402-172.935-223.228 1.00 91.51 ATOM 15 CA LEU A 410 -84.170-173.326-223.522 1.00 84.77 ATOM 16 CA GLY A 411 -85.473-175.889-221.054 1.00 84.77 ATOM 17 CA GLN A 412 -82.326-175.753-218.935 1.00 93.49 ATOM 18 CA ARG A 413 -81.955-174.490-215.364 1.00 95.37 ATOM 19 CA ALA A 414 -81.031-170.899-214.476 1.00 95.54 ATOM 20 CA THR A 415 -79.728-169.536-211.160 1.00 96.30 ATOM 21 CA ILE A 416 -79.194-165.923-210.065 1.00 97.28 ATOM 22 CA SER A 417 -77.725-164.772-206.749 1.00 95.73 ATOM 23 CA CYS A 418 -78.279-161.615-204.700 1.00 90.82 ATOM 24 CA ARG A 419 -76.030-160.626-201.787 1.00 92.47 ATOM 25 CA ALA A 420 -76.723-157.968-199.162 1.00 88.91 ATOM 26 CA SER A 421 -74.098-155.843-197.396 1.00 86.85 ATOM 27 CA GLU A 422 -75.849-156.739-194.143 1.00 89.22 ATOM 28 CA SER A 423 -78.760-158.799-192.829 1.00 85.94 ATOM 29 CA VAL A 424 -82.206-158.185-194.311 1.00 83.73 ATOM 30 CA ASP A 425 -83.946-160.522-191.874 1.00 83.41 ATOM 31 CA SER A 426 -86.155-162.247-195.062 1.00 86.60 ATOM 32 CA PHE A 427 -87.444-158.882-196.253 1.00 82.44 ATOM 33 CA ILE A 428 -86.300-159.446-199.828 1.00 83.13 ATOM 34 CA TYR A 429 -88.279-159.776-203.052 1.00 81.65 ATOM 35 CA TRP A 430 -87.689-160.896-206.631 1.00 81.25 ATOM 36 CA TYR A 431 -89.239-159.037-209.557 1.00 80.36 ATOM 37 CA GLN A 432 -89.297-159.724-213.291 1.00 76.81 ATOM 38 CA GLN A 433 -89.290-156.905-215.824 1.00 74.84 ATOM 39 CA LYS A 434 -89.694-157.097-219.587 1.00 70.67 ATOM 40 CA PRO A 435 -88.970-154.281-222.091 1.00 72.15 ATOM 41 CA GLY A 436 -91.794-151.745-222.340 1.00 68.00 ATOM 42 CA GLN A 437 -93.400-153.264-219.256 1.00 69.04 ATOM 43 CA PRO A 438 -93.506-152.371-215.553 1.00 70.52 ATOM 44 CA PRO A 439 -91.898-154.869-213.143 1.00 73.03 ATOM 45 CA LYS A 440 -93.829-157.893-211.894 1.00 77.80 ATOM 46 CA LEU A 441 -93.410-159.619-208.537 1.00 78.33 ATOM 47 CA LEU A 442 -92.228-163.219-208.589 1.00 81.05 ATOM 48 CA ILE A 443 -90.967-164.017-205.103 1.00 82.27 ATOM 49 CA TYR A 444 -91.763-162.482-201.721 1.00 83.28 ATOM 50 CA LEU A 445 -90.194-163.074-198.303 1.00 85.07 ATOM 51 CA ALA A 446 -87.284-164.900-199.975 1.00 87.12 ATOM 52 CA SER A 447 -89.119-168.163-200.684 1.00 90.64 ATOM 53 CA ASN A 448 -92.872-167.589-201.077 1.00 88.48 ATOM 54 CA LEU A 449 -94.435-167.874-204.534 1.00 84.01 ATOM 55 CA GLU A 450 -96.904-165.172-205.568 1.00 82.63 ATOM 56 CA SER A 451 -100.209-166.480-206.940 1.00 87.28 ATOM 57 CA GLY A 452 -100.153-166.698-210.729 1.00 84.03 ATOM 58 CA VAL A 453 -96.396-167.273-210.865 1.00 80.46 ATOM 59 CA PRO A 454 -95.454-170.564-212.611 1.00 78.94 ATOM 60 CA ALA A 455 -94.164-173.344-210.343 1.00 83.87 ATOM 61 CA ARG A 456 -90.855-173.479-212.233 1.00 84.55 ATOM 62 CA PHE A 457 -89.920-170.277-210.398 1.00 85.54 ATOM 63 CA SER A 458 -88.428-170.627-206.908 1.00 88.65 ATOM 64 CA GLY A 459 -86.377-168.684-204.361 1.00 89.01 ATOM 65 CA SER A 460 -84.173-169.432-201.354 1.00 97.19 ATOM 66 CA GLY A 461 -81.647-167.967-198.917 1.00 96.03 ATOM 67 CA SER A 462 -81.268-165.941-195.731 1.00 92.90 ATOM 68 CA GLU A 463 -79.459-163.089-193.961 1.00 89.56 ATOM 69 CA THR A 464 -77.191-161.823-196.719 1.00 93.75 ATOM 70 CA ASP A 465 -77.222-164.585-199.331 1.00 94.79 ATOM 71 CA PHE A 466 -80.158-165.311-201.639 1.00 92.64 ATOM 72 CA THR A 467 -80.815-167.222-204.870 1.00 95.15 ATOM 73 CA LEU A 468 -83.513-167.311-207.549 1.00 86.92 ATOM 74 CA THR A 469 -83.905-170.514-209.566 1.00 92.43 ATOM 75 CA ILE A 470 -85.831-171.330-212.743 1.00 87.36 ATOM 76 CA ASP A 471 -85.634-175.102-213.182 1.00 90.39 ATOM 77 CA SER A 472 -86.649-174.984-216.857 1.00 88.50 ATOM 78 CA VAL A 473 -86.372-171.694-218.744 1.00 84.49 ATOM 79 CA GLU A 474 -88.835-170.805-221.502 1.00 78.87 ATOM 80 CA THR A 475 -88.815-168.225-224.302 1.00 71.40 ATOM 81 CA ASP A 476 -91.019-165.783-222.398 1.00 73.15 ATOM 82 CA ASP A 477 -88.623-166.005-219.456 1.00 77.12 ATOM 83 CA ALA A 478 -86.273-163.641-221.259 1.00 79.88 ATOM 84 CA ALA A 479 -86.289-160.477-219.163 1.00 80.47 ATOM 85 CA THR A 480 -84.279-158.515-216.627 1.00 86.59 ATOM 86 CA TYR A 481 -84.581-159.719-213.025 1.00 82.62 ATOM 87 CA TYR A 482 -84.203-157.511-209.945 1.00 80.05 ATOM 88 CA CYS A 483 -83.994-158.238-206.220 1.00 85.66 ATOM 89 CA GLN A 484 -85.149-155.639-203.676 1.00 77.11 ATOM 90 CA GLN A 485 -84.991-155.134-199.904 1.00 77.14 ATOM 91 CA ASN A 486 -87.077-153.108-197.467 1.00 76.98 ATOM 92 CA ASN A 487 -85.506-154.089-194.138 1.00 76.82 ATOM 93 CA GLU A 488 -84.391-150.472-193.765 1.00 70.86 ATOM 94 CA ASP A 489 -84.944-147.104-195.441 1.00 69.37 ATOM 95 CA PRO A 490 -84.199-146.270-198.100 1.00 65.57 ATOM 96 CA TYR A 491 -85.299-149.343-200.066 1.00 69.59 ATOM 97 CA THR A 492 -82.541-150.598-202.365 1.00 73.58 ATOM 98 CA PHE A 493 -82.418-152.711-205.518 1.00 77.52 ATOM 99 CA GLY A 494 -79.802-155.121-206.826 1.00 81.77 ATOM 100 CA GLY A 495 -77.833-154.218-209.935 1.00 87.09 ATOM 101 CA GLY A 496 -80.013-156.429-212.108 1.00 86.77 ATOM 102 CA THR A 497 -79.403-159.722-213.867 1.00 90.52 ATOM 103 CA LYS A 498 -80.175-160.084-217.570 1.00 89.37 ATOM 104 CA LEU A 499 -81.364-163.510-218.708 1.00 92.15 ATOM 105 CA GLU A 500 -81.059-164.635-222.308 1.00 90.66 ATOM 106 CA ILE A 501 -82.583-167.682-223.957 1.00100.00 TER