HEADER VIRUS/IMMUNE SYSTEM 13-OCT-14 3J8D TITLE Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5 COMPND MOL_ID: 2; COMPND 2 MOLECULE: antibody E111 Fab fragment; COMPND 3 CHAIN: A, D; EXPDTA ELECTRON MICROSCOPY DBREF 3J8D D 396 819 PDB 3J8D 3J8D 396 819 SEQRES 1 D 106 ASN ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 D 106 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 D 106 GLU SER VAL ASP SER PHE ILE TYR TRP TYR GLN GLN LYS SEQRES 4 D 106 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR LEU ALA SER SEQRES 5 D 106 ASN LEU GLU SER GLY VAL PRO ALA ARG PHE SER GLY SER SEQRES 6 D 106 GLY SER GLU THR ASP PHE THR LEU THR ILE ASP SER VAL SEQRES 7 D 106 GLU THR ASP ASP ALA ALA THR TYR TYR CYS GLN GLN ASN SEQRES 8 D 106 ASN GLU ASP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 D 106 GLU ILE ATOM 1 CA ASN D 396 -52.423-197.637-151.293 1.00162.57 ATOM 2 CA ILE D 397 -54.764-200.490-150.397 1.00148.50 ATOM 3 CA VAL D 398 -52.668-203.300-148.910 1.00140.65 ATOM 4 CA LEU D 399 -53.777-206.911-149.378 1.00144.14 ATOM 5 CA THR D 400 -52.672-209.505-146.825 1.00155.13 ATOM 6 CA GLN D 401 -53.340-213.189-147.487 1.00162.21 ATOM 7 CA SER D 402 -53.619-215.971-144.919 1.00161.19 ATOM 8 CA PRO D 403 -52.197-218.428-144.511 1.00148.65 ATOM 9 CA ALA D 404 -48.874-218.265-146.375 1.00137.40 ATOM 10 CA SER D 405 -49.263-221.906-147.388 1.00136.18 ATOM 11 CA LEU D 406 -51.393-224.946-146.563 1.00155.03 ATOM 12 CA ALA D 407 -51.767-228.604-147.523 1.00170.09 ATOM 13 CA VAL D 408 -55.194-230.178-148.008 1.00176.54 ATOM 14 CA SER D 409 -56.044-233.865-148.432 1.00161.15 ATOM 15 CA LEU D 410 -57.406-234.716-151.875 1.00151.99 ATOM 16 CA GLY D 411 -61.174-234.338-151.983 1.00154.17 ATOM 17 CA GLN D 412 -61.260-232.223-148.831 1.00177.98 ATOM 18 CA ARG D 413 -62.255-228.567-148.486 1.00181.29 ATOM 19 CA ALA D 414 -59.780-225.673-148.686 1.00177.27 ATOM 20 CA THR D 415 -60.247-222.069-147.527 1.00183.36 ATOM 21 CA ILE D 416 -58.003-219.036-148.076 1.00181.71 ATOM 22 CA SER D 417 -58.573-215.537-146.693 1.00157.37 ATOM 23 CA CYS D 418 -57.578-212.108-148.007 1.00165.77 ATOM 24 CA ARG D 419 -57.780-208.950-145.884 1.00151.96 ATOM 25 CA ALA D 420 -57.536-205.357-147.100 1.00140.06 ATOM 26 CA SER D 421 -56.103-202.429-145.126 1.00139.57 ATOM 27 CA GLU D 422 -59.227-200.497-146.107 1.00139.54 ATOM 28 CA SER D 423 -62.482-200.927-148.019 1.00133.29 ATOM 29 CA VAL D 424 -62.302-202.122-151.623 1.00137.24 ATOM 30 CA ASP D 425 -66.028-201.684-152.219 1.00133.60 ATOM 31 CA SER D 426 -66.204-205.487-154.095 1.00141.52 ATOM 32 CA PHE D 427 -63.426-204.633-156.535 1.00155.10 ATOM 33 CA ILE D 428 -61.408-207.734-155.686 1.00158.01 ATOM 34 CA TYR D 429 -60.444-210.734-157.803 1.00154.55 ATOM 35 CA TRP D 430 -59.022-214.216-157.294 1.00157.73 ATOM 36 CA TYR D 431 -56.454-215.665-159.687 1.00138.70 ATOM 37 CA GLN D 432 -54.832-219.088-159.945 1.00133.48 ATOM 38 CA GLN D 433 -51.260-219.502-161.143 1.00127.35 ATOM 39 CA LYS D 434 -49.364-222.697-161.889 1.00137.20 ATOM 40 CA PRO D 435 -45.577-223.017-162.411 1.00153.99 ATOM 41 CA GLY D 436 -44.466-222.039-165.915 1.00144.71 ATOM 42 CA GLN D 437 -47.911-220.589-166.578 1.00136.17 ATOM 43 CA PRO D 438 -49.415-217.088-166.545 1.00129.24 ATOM 44 CA PRO D 439 -52.144-216.422-163.947 1.00129.27 ATOM 45 CA LYS D 440 -55.761-217.362-164.635 1.00137.80 ATOM 46 CA LEU D 441 -58.850-215.604-163.297 1.00148.83 ATOM 47 CA LEU D 442 -61.122-217.612-161.022 1.00163.07 ATOM 48 CA ILE D 443 -63.316-215.125-159.182 1.00176.01 ATOM 49 CA TYR D 444 -64.381-211.582-160.043 1.00152.07 ATOM 50 CA LEU D 445 -66.281-209.001-157.987 1.00150.19 ATOM 51 CA ALA D 446 -65.723-211.113-154.852 1.00148.56 ATOM 52 CA SER D 447 -68.356-213.764-155.594 1.00164.96 ATOM 53 CA ASN D 448 -68.936-214.133-159.349 1.00153.54 ATOM 54 CA LEU D 449 -67.668-217.255-161.118 1.00167.50 ATOM 55 CA GLU D 450 -65.863-216.778-164.433 1.00165.91 ATOM 56 CA SER D 451 -67.137-218.984-167.267 1.00155.61 ATOM 57 CA GLY D 452 -65.094-222.169-167.575 1.00161.15 ATOM 58 CA VAL D 453 -64.210-222.227-163.878 1.00157.60 ATOM 59 CA PRO D 454 -65.351-225.448-162.122 1.00145.33 ATOM 60 CA ALA D 455 -68.314-225.093-159.748 1.00154.43 ATOM 61 CA ARG D 456 -66.236-226.361-156.812 1.00156.41 ATOM 62 CA PHE D 457 -64.594-222.926-156.767 1.00162.85 ATOM 63 CA SER D 458 -66.379-220.153-154.854 1.00178.30 ATOM 64 CA GLY D 459 -65.721-216.759-153.270 1.00154.13 ATOM 65 CA SER D 460 -67.291-214.534-150.616 1.00162.92 ATOM 66 CA GLY D 461 -66.772-211.457-148.443 1.00144.25 ATOM 67 CA SER D 462 -66.971-207.667-148.383 1.00135.15 ATOM 68 CA GLU D 463 -65.266-204.399-147.410 1.00129.23 ATOM 69 CA THR D 464 -61.982-205.663-146.007 1.00135.58 ATOM 70 CA ASP D 465 -62.548-209.379-145.436 1.00140.30 ATOM 71 CA PHE D 466 -62.725-211.966-148.219 1.00141.89 ATOM 72 CA THR D 467 -62.505-215.754-148.583 1.00155.77 ATOM 73 CA LEU D 468 -61.912-218.248-151.392 1.00168.77 ATOM 74 CA THR D 469 -63.272-221.774-150.949 1.00173.78 ATOM 75 CA ILE D 470 -62.682-225.013-152.853 1.00160.95 ATOM 76 CA ASP D 471 -65.182-227.533-151.493 1.00167.51 ATOM 77 CA SER D 472 -63.307-230.541-152.902 1.00164.35 ATOM 78 CA VAL D 473 -59.668-230.132-153.928 1.00145.52 ATOM 79 CA GLU D 474 -58.223-232.100-156.844 1.00137.57 ATOM 80 CA THR D 475 -54.671-232.867-157.983 1.00148.42 ATOM 81 CA ASP D 476 -54.671-230.139-160.630 1.00154.01 ATOM 82 CA ASP D 477 -55.746-227.643-157.973 1.00135.85 ATOM 83 CA ALA D 478 -52.165-227.489-156.740 1.00131.16 ATOM 84 CA ALA D 479 -51.015-223.965-157.546 1.00127.43 ATOM 85 CA THR D 480 -50.351-220.571-156.008 1.00131.18 ATOM 86 CA TYR D 481 -53.430-218.387-155.489 1.00133.75 ATOM 87 CA TYR D 482 -53.432-214.578-155.501 1.00142.53 ATOM 88 CA CYS D 483 -56.057-211.965-154.643 1.00165.29 ATOM 89 CA GLN D 484 -55.962-208.522-156.282 1.00141.23 ATOM 90 CA GLN D 485 -57.710-205.163-155.867 1.00154.27 ATOM 91 CA ASN D 486 -58.289-202.231-158.207 1.00147.26 ATOM 92 CA ASN D 487 -60.427-199.948-156.034 1.00149.75 ATOM 93 CA GLU D 488 -57.572-197.436-156.120 1.00138.26 ATOM 94 CA ASP D 489 -54.269-196.896-157.926 1.00134.52 ATOM 95 CA PRO D 490 -51.866-198.488-157.802 1.00125.99 ATOM 96 CA TYR D 491 -53.390-201.970-158.058 1.00131.94 ATOM 97 CA THR D 492 -52.093-204.274-155.324 1.00131.46 ATOM 98 CA PHE D 493 -51.813-208.035-154.880 1.00147.58 ATOM 99 CA GLY D 494 -51.998-210.221-151.791 1.00144.70 ATOM 100 CA GLY D 495 -48.881-212.010-150.590 1.00156.97 ATOM 101 CA GLY D 496 -49.996-215.272-152.166 1.00148.21 ATOM 102 CA THR D 497 -51.242-218.539-150.723 1.00138.38 ATOM 103 CA LYS D 498 -49.629-221.822-151.753 1.00139.19 ATOM 104 CA LEU D 499 -51.924-224.848-151.883 1.00156.39 ATOM 105 CA GLU D 500 -50.587-228.381-151.643 1.00157.56 ATOM 106 CA ILE D 501 -52.413-231.635-152.270 1.00170.83 TER