HEADER VIRUS/IMMUNE SYSTEM 13-OCT-14 3J8D TITLE Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5 COMPND MOL_ID: 2; COMPND 2 MOLECULE: antibody E111 Fab fragment; COMPND 3 CHAIN: A, D; EXPDTA ELECTRON MICROSCOPY DBREF 3J8D D 396 819 PDB 3J8D 3J8D 396 819 SEQRES 1 D 117 LYS GLN VAL GLN LEU LEU GLN PRO GLY ALA GLU LEU VAL SEQRES 2 D 117 LYS PRO GLY ALA SER MET LYS LEU SER CYS LYS ALA SER SEQRES 3 D 117 GLY TYR THR PHE THR ASN TRP TRP MET HIS TRP VAL ARG SEQRES 4 D 117 LEU ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE SEQRES 5 D 117 ASP PRO ASN SER ASP VAL ASN LYS TYR ASN GLU LYS PHE SEQRES 6 D 117 GLU ASN ARG ALA SER LEU THR VAL ASP LYS HIS SER SER SEQRES 7 D 117 THR ALA TYR MET GLN LEU THR SER GLU ASP SER ALA ILE SEQRES 8 D 117 TYR TYR CYS ALA ARG TRP PHE PHE PRO TRP TYR PHE ASP SEQRES 9 D 117 VAL TRP GLY THR GLY THR THR VAL THR VAL SER ARG ALA ATOM 1 CA LYS D 502 -52.122-234.026-149.479 1.00175.04 ATOM 2 CA GLN D 608 -58.640-216.331-181.184 1.00159.20 ATOM 3 CA VAL D 609 -57.134-213.777-178.807 1.00144.83 ATOM 4 CA GLN D 610 -53.352-213.832-178.373 1.00137.54 ATOM 5 CA LEU D 611 -50.969-211.570-176.460 1.00121.23 ATOM 6 CA LEU D 612 -47.443-212.496-177.550 1.00115.30 ATOM 7 CA GLN D 613 -44.291-211.560-175.649 1.00110.03 ATOM 8 CA PRO D 614 -40.629-212.427-176.282 1.00128.88 ATOM 9 CA GLY D 615 -39.436-215.378-174.220 1.00136.43 ATOM 10 CA ALA D 616 -36.371-213.818-172.619 1.00122.95 ATOM 11 CA GLU D 617 -34.331-210.647-172.159 1.00136.57 ATOM 12 CA LEU D 618 -30.785-210.154-170.899 1.00126.91 ATOM 13 CA VAL D 619 -30.064-206.572-169.872 1.00122.87 ATOM 14 CA LYS D 620 -27.263-204.825-167.991 1.00125.42 ATOM 15 CA PRO D 621 -27.805-203.037-164.662 1.00140.17 ATOM 16 CA GLY D 622 -28.621-199.343-165.096 1.00142.96 ATOM 17 CA ALA D 623 -29.490-199.966-168.748 1.00144.01 ATOM 18 CA SER D 624 -32.954-199.779-170.298 1.00141.15 ATOM 19 CA MET D 625 -35.238-202.416-171.815 1.00134.68 ATOM 20 CA LYS D 626 -38.265-202.383-174.124 1.00131.78 ATOM 21 CA LEU D 627 -40.699-205.303-173.928 1.00118.40 ATOM 22 CA SER D 628 -43.284-206.021-176.620 1.00105.05 ATOM 23 CA CYS D 629 -46.776-207.533-176.490 1.00111.21 ATOM 24 CA LYS D 630 -48.332-208.365-179.858 1.00104.74 ATOM 25 CA ALA D 631 -52.101-208.589-179.719 1.00119.61 ATOM 26 CA SER D 632 -54.213-210.520-182.212 1.00133.04 ATOM 27 CA GLY D 633 -57.737-211.866-182.578 1.00140.08 ATOM 28 CA TYR D 634 -59.395-208.633-181.497 1.00140.30 ATOM 29 CA THR D 635 -59.457-204.861-181.965 1.00146.07 ATOM 30 CA PHE D 636 -56.229-203.798-180.248 1.00132.63 ATOM 31 CA THR D 637 -57.451-200.241-179.633 1.00143.44 ATOM 32 CA ASN D 638 -60.707-201.454-178.051 1.00147.05 ATOM 33 CA TRP D 639 -59.080-202.663-174.830 1.00146.58 ATOM 34 CA TRP D 640 -56.638-201.206-172.321 1.00134.84 ATOM 35 CA MET D 641 -53.318-202.966-171.784 1.00140.31 ATOM 36 CA HIS D 642 -51.731-203.449-168.370 1.00117.53 ATOM 37 CA TRP D 643 -48.285-204.647-167.351 1.00116.22 ATOM 38 CA VAL D 644 -47.552-206.856-164.332 1.00127.19 ATOM 39 CA ARG D 645 -44.365-208.556-163.137 1.00124.17 ATOM 40 CA LEU D 646 -43.768-211.699-161.093 1.00138.17 ATOM 41 CA ARG D 647 -40.679-211.825-158.888 1.00139.41 ATOM 42 CA PRO D 648 -39.462-215.060-157.242 1.00151.67 ATOM 43 CA GLY D 649 -40.906-215.284-153.731 1.00161.95 ATOM 44 CA ARG D 650 -42.152-211.707-154.018 1.00154.47 ATOM 45 CA GLY D 651 -45.473-212.159-155.803 1.00144.36 ATOM 46 CA LEU D 652 -47.059-210.109-158.573 1.00142.88 ATOM 47 CA GLU D 653 -46.501-206.371-159.000 1.00136.12 ATOM 48 CA TRP D 654 -48.553-203.916-161.060 1.00130.72 ATOM 49 CA ILE D 655 -46.578-201.541-163.274 1.00126.31 ATOM 50 CA GLY D 656 -49.124-199.538-165.252 1.00128.59 ATOM 51 CA ARG D 657 -51.878-199.354-167.859 1.00124.14 ATOM 52 CA ILE D 658 -52.484-197.631-171.196 1.00133.91 ATOM 53 CA ASP D 659A -55.449-197.041-173.515 1.00132.43 ATOM 54 CA PRO D 659B -54.135-197.842-177.039 1.00137.05 ATOM 55 CA ASN D 660 -56.985-195.850-178.605 1.00143.23 ATOM 56 CA SER D 661 -56.108-192.502-177.045 1.00147.37 ATOM 57 CA ASP D 662 -52.622-193.224-175.656 1.00142.56 ATOM 58 CA VAL D 663 -53.894-192.201-172.214 1.00145.02 ATOM 59 CA ASN D 664 -51.896-193.951-169.487 1.00138.77 ATOM 60 CA LYS D 665 -51.279-194.402-165.763 1.00140.20 ATOM 61 CA TYR D 666 -48.189-195.598-163.922 1.00136.93 ATOM 62 CA ASN D 667 -47.511-197.146-160.548 1.00136.07 ATOM 63 CA GLU D 668 -45.876-194.298-158.636 1.00135.31 ATOM 64 CA LYS D 669 -43.038-196.647-157.654 1.00143.59 ATOM 65 CA PHE D 670 -42.164-196.953-161.344 1.00140.58 ATOM 66 CA GLU D 671 -43.326-193.544-162.566 1.00144.91 ATOM 67 CA ASN D 672 -39.861-191.999-162.862 1.00159.99 ATOM 68 CA ARG D 673 -38.545-195.187-164.431 1.00150.44 ATOM 69 CA ALA D 674 -41.185-196.554-166.805 1.00151.20 ATOM 70 CA SER D 675 -42.811-195.693-170.134 1.00135.96 ATOM 71 CA LEU D 676 -45.885-197.271-171.741 1.00131.23 ATOM 72 CA THR D 677 -46.306-196.866-175.494 1.00127.81 ATOM 73 CA VAL D 678 -48.129-198.596-178.332 1.00122.29 ATOM 74 CA ASP D 679 -47.889-199.317-182.039 1.00125.20 ATOM 75 CA LYS D 680 -51.432-199.556-183.417 1.00133.54 ATOM 76 CA HIS D 681 -50.229-200.658-186.866 1.00132.03 ATOM 77 CA SER D 682 -48.806-203.923-185.543 1.00125.83 ATOM 78 CA SER D 683 -51.292-204.153-182.662 1.00114.64 ATOM 79 CA THR D 684 -48.349-204.221-180.284 1.00107.47 ATOM 80 CA ALA D 685 -47.987-202.601-176.877 1.00114.80 ATOM 81 CA TYR D 686 -44.570-201.708-175.493 1.00119.01 ATOM 82 CA MET D 687 -43.203-201.127-172.009 1.00129.03 ATOM 83 CA GLN D 688 -39.826-199.537-171.379 1.00138.47 ATOM 84 CA LEU D 689 -37.971-199.620-168.072 1.00144.65 ATOM 85 CA THR D 690 -31.324-203.609-161.144 1.00131.43 ATOM 86 CA SER D 691 -31.239-207.250-160.035 1.00129.57 ATOM 87 CA GLU D 692 -34.443-206.449-158.143 1.00130.36 ATOM 88 CA ASP D 693 -36.104-206.064-161.546 1.00131.57 ATOM 89 CA SER D 694 -35.364-209.641-162.564 1.00124.63 ATOM 90 CA ALA D 695 -38.836-211.129-163.012 1.00112.14 ATOM 91 CA ILE D 696 -41.354-212.569-165.459 1.00111.23 ATOM 92 CA TYR D 697 -43.156-209.719-167.203 1.00116.05 ATOM 93 CA TYR D 698 -46.718-210.208-168.422 1.00111.09 ATOM 94 CA CYS D 699 -48.926-207.933-170.452 1.00105.24 ATOM 95 CA ALA D 700 -52.627-208.351-169.778 1.00102.56 ATOM 96 CA ARG D 701 -55.828-207.223-171.444 1.00126.49 ATOM 97 CA TRP D 702 -58.202-205.319-169.178 1.00128.19 ATOM 98 CA PHE D 703 -61.754-206.579-169.014 1.00141.95 ATOM 99 CA PHE D 704 -63.093-203.078-168.482 1.00151.12 ATOM 100 CA PRO D 705 -63.496-202.012-165.844 1.00152.78 ATOM 101 CA TRP D 706 -62.725-205.130-163.812 1.00141.12 ATOM 102 CA TYR D 707A -60.217-207.940-164.219 1.00140.19 ATOM 103 CA PHE D 707B -57.529-209.134-166.610 1.00124.22 ATOM 104 CA ASP D 708 -59.126-211.586-169.039 1.00129.53 ATOM 105 CA VAL D 709 -56.182-212.456-171.299 1.00130.88 ATOM 106 CA TRP D 710 -52.557-212.786-170.197 1.00113.16 ATOM 107 CA GLY D 711 -49.454-212.541-172.358 1.00105.78 ATOM 108 CA THR D 712 -47.014-215.412-172.856 1.00107.50 ATOM 109 CA GLY D 713 -44.624-213.703-170.446 1.00103.82 ATOM 110 CA THR D 714 -41.076-212.413-170.813 1.00114.34 ATOM 111 CA THR D 715 -38.417-213.705-168.441 1.00108.18 ATOM 112 CA VAL D 716 -36.217-210.688-167.780 1.00121.33 ATOM 113 CA THR D 717 -32.730-211.028-166.330 1.00124.23 ATOM 114 CA VAL D 718 -30.813-207.932-165.299 1.00124.85 ATOM 115 CA SER D 719 -27.183-209.012-165.397 1.00140.80 ATOM 116 CA ARG D 503 -62.707-235.489-153.075 1.00190.19 ATOM 117 CA ALA D 504 -62.360-239.218-152.452 1.00181.96 TER