HEADER VIRUS/IMMUNE SYSTEM 13-OCT-14 3J8D TITLE Cryoelectron microscopy of dengue-Fab E104 complex at pH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: glycoprotein DIII; COMPND 3 CHAIN: B, F; COMPND 4 FRAGMENT: SEE REMARK ; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 3J8D F 299 395 PDB 3J8D 3J8D 299 395 SEQRES 1 F 97 TYR VAL MET CYS THR GLY SER PHE LYS LEU GLU LYS GLU SEQRES 2 F 97 VAL ALA GLU THR GLN HIS GLY THR VAL LEU VAL GLN VAL SEQRES 3 F 97 LYS TYR GLU GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SEQRES 4 F 97 SER SER GLN ASP GLU LYS GLY VAL THR GLN ASN GLY ARG SEQRES 5 F 97 LEU ILE THR ALA ASN PRO ILE VAL THR ASP LYS GLU LYS SEQRES 6 F 97 PRO VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY GLU SER SEQRES 7 F 97 TYR ILE VAL VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SEQRES 8 F 97 SER TRP PHE LYS LYS GLY ATOM 1 CA TYR F 299 -78.195-213.317-159.553 1.00189.28 ATOM 2 CA VAL F 300 -75.275-213.218-161.965 1.00186.75 ATOM 3 CA MET F 301 -73.879-210.030-163.497 1.00182.43 ATOM 4 CA CYS F 302 -75.443-208.972-166.802 1.00186.37 ATOM 5 CA THR F 303 -73.301-209.953-169.790 1.00181.07 ATOM 6 CA GLY F 304 -74.985-208.079-172.632 1.00184.68 ATOM 7 CA SER F 305 -74.587-204.615-174.142 1.00180.77 ATOM 8 CA PHE F 306 -76.324-201.369-173.190 1.00193.74 ATOM 9 CA LYS F 307 -77.854-198.618-175.331 1.00185.48 ATOM 10 CA LEU F 308 -78.598-195.142-173.971 1.00199.12 ATOM 11 CA GLU F 309 -82.334-194.405-174.044 1.00190.86 ATOM 12 CA LYS F 310 -82.424-190.868-172.631 1.00177.07 ATOM 13 CA GLU F 311 -80.272-187.801-171.986 1.00192.79 ATOM 14 CA VAL F 312 -78.406-187.748-168.669 1.00182.49 ATOM 15 CA ALA F 313 -80.085-185.351-166.230 1.00175.34 ATOM 16 CA GLU F 314 -78.948-183.523-163.094 1.00157.14 ATOM 17 CA THR F 315 -81.505-183.561-160.276 1.00169.76 ATOM 18 CA GLN F 316 -82.384-180.696-157.932 1.00175.66 ATOM 19 CA HIS F 317 -79.968-182.050-155.345 1.00175.17 ATOM 20 CA GLY F 318 -76.777-182.728-157.292 1.00155.56 ATOM 21 CA THR F 319 -77.595-186.289-158.330 1.00156.23 ATOM 22 CA VAL F 320 -78.119-187.845-161.759 1.00163.38 ATOM 23 CA LEU F 321 -80.940-189.928-163.251 1.00170.65 ATOM 24 CA VAL F 322 -79.885-192.338-166.014 1.00186.81 ATOM 25 CA GLN F 323 -82.331-194.461-168.028 1.00184.78 ATOM 26 CA VAL F 324 -80.813-197.193-170.179 1.00205.47 ATOM 27 CA LYS F 325 -82.030-199.980-172.452 1.00201.25 ATOM 28 CA TYR F 326 -80.597-203.464-172.124 1.00186.91 ATOM 29 CA GLU F 327 -79.348-205.627-174.965 1.00181.98 ATOM 30 CA GLY F 328 -78.663-209.013-173.406 1.00170.27 ATOM 31 CA THR F 329 -80.190-212.473-173.074 1.00172.29 ATOM 32 CA ASP F 330 -79.403-213.335-169.454 1.00186.12 ATOM 33 CA ALA F 331 -82.166-211.430-167.668 1.00186.30 ATOM 34 CA PRO F 332 -82.791-211.511-164.835 1.00199.60 ATOM 35 CA CYS F 333 -79.267-210.350-163.952 1.00189.41 ATOM 36 CA LYS F 334 -77.391-207.768-161.882 1.00176.57 ATOM 37 CA ILE F 335 -76.326-204.588-163.695 1.00194.37 ATOM 38 CA PRO F 336 -72.599-203.750-163.696 1.00183.94 ATOM 39 CA PHE F 337 -72.308-200.135-162.501 1.00173.63 ATOM 40 CA SER F 338 -69.181-198.151-161.612 1.00149.75 ATOM 41 CA SER F 339 -67.766-194.619-161.745 1.00145.26 ATOM 42 CA GLN F 340 -64.227-193.658-162.733 1.00142.98 ATOM 43 CA ASP F 341 -62.130-190.798-164.093 1.00139.81 ATOM 44 CA GLU F 342 -60.415-190.027-167.408 1.00154.96 ATOM 45 CA LYS F 343 -57.334-192.139-166.666 1.00141.58 ATOM 46 CA GLY F 344 -59.423-195.207-165.873 1.00131.14 ATOM 47 CA VAL F 345 -58.894-194.701-162.153 1.00125.18 ATOM 48 CA THR F 346 -61.669-195.957-159.886 1.00141.71 ATOM 49 CA GLN F 347 -63.225-192.900-158.252 1.00136.07 ATOM 50 CA ASN F 348 -65.445-192.913-155.180 1.00169.39 ATOM 51 CA GLY F 349 -69.167-192.163-155.015 1.00172.98 ATOM 52 CA ARG F 350 -72.458-193.669-153.868 1.00174.52 ATOM 53 CA LEU F 351 -75.574-195.378-155.249 1.00172.82 ATOM 54 CA ILE F 352 -79.023-194.094-154.315 1.00176.18 ATOM 55 CA THR F 353 -80.798-196.973-156.081 1.00167.15 ATOM 56 CA ALA F 354 -80.811-200.142-153.937 1.00178.72 ATOM 57 CA ASN F 355 -79.533-202.722-156.435 1.00190.52 ATOM 58 CA PRO F 356 -79.797-202.171-160.241 1.00194.97 ATOM 59 CA ILE F 357 -81.253-205.336-161.814 1.00181.44 ATOM 60 CA VAL F 358 -82.616-206.158-165.279 1.00182.62 ATOM 61 CA THR F 359 -85.904-207.953-164.654 1.00194.31 ATOM 62 CA ASP F 360 -86.951-207.936-168.301 1.00186.60 ATOM 63 CA LYS F 361 -84.491-207.248-171.125 1.00182.92 ATOM 64 CA GLU F 362 -87.237-205.403-173.009 1.00194.42 ATOM 65 CA LYS F 363 -87.777-202.973-170.119 1.00198.77 ATOM 66 CA PRO F 364 -85.503-199.937-169.507 1.00200.59 ATOM 67 CA VAL F 365 -84.196-199.420-165.954 1.00182.58 ATOM 68 CA ASN F 366 -83.892-196.057-164.170 1.00188.31 ATOM 69 CA ILE F 367 -80.875-195.372-161.925 1.00182.22 ATOM 70 CA GLU F 368 -80.229-192.411-159.615 1.00179.32 ATOM 71 CA ALA F 369 -76.676-191.835-158.388 1.00162.45 ATOM 72 CA GLU F 370 -74.454-189.302-156.621 1.00152.62 ATOM 73 CA PRO F 371 -71.299-189.052-158.780 1.00151.18 ATOM 74 CA PRO F 372 -67.947-187.737-157.520 1.00133.31 ATOM 75 CA PHE F 373 -67.283-184.007-157.759 1.00141.32 ATOM 76 CA GLY F 374 -65.641-182.736-160.929 1.00146.68 ATOM 77 CA GLU F 375 -65.003-184.818-164.039 1.00147.72 ATOM 78 CA SER F 376 -65.959-188.491-164.091 1.00143.21 ATOM 79 CA TYR F 377 -67.140-191.378-166.265 1.00134.81 ATOM 80 CA ILE F 378 -70.348-193.275-165.617 1.00162.97 ATOM 81 CA VAL F 379 -69.780-196.923-166.535 1.00169.15 ATOM 82 CA VAL F 380 -72.817-199.077-167.321 1.00175.53 ATOM 83 CA GLY F 381 -72.129-202.727-168.107 1.00178.80 ATOM 84 CA ALA F 382 -68.864-204.604-168.541 1.00160.55 ATOM 85 CA GLY F 383 -66.549-205.764-171.313 1.00164.63 ATOM 86 CA GLU F 384 -65.518-204.130-174.579 1.00155.42 ATOM 87 CA LYS F 385 -68.971-202.681-175.280 1.00166.37 ATOM 88 CA ALA F 386 -69.256-201.052-171.837 1.00165.16 ATOM 89 CA LEU F 387 -71.170-197.750-171.886 1.00178.80 ATOM 90 CA LYS F 388 -68.960-194.795-170.913 1.00171.04 ATOM 91 CA LEU F 389 -70.688-191.457-170.273 1.00157.14 ATOM 92 CA SER F 390 -68.945-188.220-169.244 1.00155.91 ATOM 93 CA TRP F 391 -70.287-186.207-166.298 1.00141.51 ATOM 94 CA PHE F 392 -69.272-183.068-164.412 1.00137.20 ATOM 95 CA LYS F 393 -70.499-182.171-160.929 1.00128.22 ATOM 96 CA LYS F 394 -69.595-178.646-159.807 1.00129.62 ATOM 97 CA GLY F 395 -68.678-177.999-156.177 1.00136.24 TER