HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 A 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 A 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 A 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 A 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 A 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 A 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 A 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 A 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 A 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 A 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 A 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 A 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 A 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 A 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 A 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 A 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 A 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 A 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU A 222 25.110-101.767 272.576 1.00 63.78 ATOM 2 CA PRO A 223 24.767 -99.049 275.257 1.00 55.89 ATOM 3 CA HIS A 224 22.496 -99.902 278.193 1.00 60.32 ATOM 4 CA GLU A 225 20.305 -97.828 280.484 1.00 66.73 ATOM 5 CA TYR A 226 18.803 -99.442 283.561 1.00 58.83 ATOM 6 CA LEU A 227 16.216 -97.757 285.730 1.00 55.49 ATOM 7 CA ILE A 228 17.268 -98.939 289.186 1.00 69.68 ATOM 8 CA GLU A 229 16.407 -98.170 292.786 1.00 69.73 ATOM 9 CA GLN A 230 18.518 -97.023 295.698 1.00 59.42 ATOM 10 CA LEU A 231 18.204 -96.704 299.435 1.00 83.11 ATOM 11 CA GLN A 232 18.746 -93.476 301.388 1.00 72.10 ATOM 12 CA PHE A 233 19.255 -93.197 305.152 1.00 72.71 ATOM 13 CA THR A 234 20.355 -91.055 308.168 1.00 52.84 ATOM 14 CA GLY A 235 20.163 -91.748 311.953 1.00 61.79 ATOM 15 CA SER A 236 18.140 -89.303 314.129 1.00 52.82 ATOM 16 CA GLU A 237 17.403 -89.030 317.866 1.00 46.18 ATOM 17 CA THR A 238 13.834 -89.358 319.137 1.00 51.27 ATOM 18 CA ALA A 239 12.604 -87.495 322.203 1.00 52.67 ATOM 19 CA THR A 240 9.412 -89.058 323.589 1.00 60.32 ATOM 20 CA PRO A 241 7.574 -87.263 326.498 1.00 49.82 ATOM 21 CA SER A 242 8.046 -89.165 329.719 1.00 43.60 ATOM 22 CA ALA A 243 4.593 -87.992 330.810 1.00 69.55 ATOM 23 CA THR A 244 2.320 -85.013 331.467 1.00107.94 ATOM 24 CA THR A 245 3.361 -83.968 327.957 1.00 94.97 ATOM 25 CA GLN A 246 3.349 -85.068 324.322 1.00 64.41 ATOM 26 CA ALA A 247 6.721 -84.166 322.812 1.00 49.64 ATOM 27 CA SER A 248 7.117 -83.197 319.158 1.00 46.01 ATOM 28 CA GLN A 249 9.813 -82.708 316.529 1.00 57.77 ATOM 29 CA ASN A 250 10.491 -81.698 312.944 1.00 65.96 ATOM 30 CA ILE A 251 13.110 -83.872 311.313 1.00 79.32 ATOM 31 CA ARG A 252 14.407 -82.021 308.265 1.00 72.35 ATOM 32 CA LEU A 253 14.667 -84.795 305.660 1.00 94.42 ATOM 33 CA ASN A 254 17.709 -84.734 303.367 1.00 87.33 ATOM 34 CA PHE A 255 16.712 -86.891 300.408 1.00 76.40 ATOM 35 CA ASN A 256 16.972 -86.561 296.627 1.00 65.32 ATOM 36 CA HIS A 257 15.812 -87.985 293.287 1.00 64.45 ATOM 37 CA PRO A 258 12.347 -89.368 292.376 1.00 80.57 ATOM 38 CA THR A 259 11.261 -91.154 295.583 1.00 64.55 ATOM 39 CA LYS A 260 8.730 -94.036 295.723 1.00 81.06 ATOM 40 CA TYR A 261 8.179 -93.940 299.453 1.00 61.99 ATOM 41 CA LEU A 262 9.471 -93.175 302.934 1.00 59.38 ATOM 42 CA ALA A 263 9.799 -95.780 305.681 1.00 60.16 ATOM 43 CA TRP A 264 10.734 -95.067 309.263 1.00 61.06 ATOM 44 CA ASN A 265 10.899 -96.563 312.748 1.00 65.79 ATOM 45 CA PHE A 266 11.784 -95.543 316.306 1.00 53.78 ATOM 46 CA ASN A 267 14.167 -98.108 317.759 1.00 67.32 ATOM 47 CA ASN A 268 15.838 -98.826 321.103 1.00 81.97 ATOM 48 CA PRO A 269 19.543 -99.010 320.129 1.00 88.52 ATOM 49 CA THR A 270 20.191-101.545 322.904 1.00 70.47 ATOM 50 CA ASN A 271 17.901-104.133 321.292 1.00 77.40 ATOM 51 CA TYR A 272 18.171-104.965 317.585 1.00 78.82 ATOM 52 CA GLY A 273 14.695-104.870 316.047 1.00 84.44 ATOM 53 CA GLN A 274 12.950-103.320 319.047 1.00 83.44 ATOM 54 CA TYR A 275 10.604-100.774 317.516 1.00 77.29 ATOM 55 CA THR A 276 8.060-101.063 320.323 1.00 64.91 ATOM 56 CA ALA A 277 7.996-100.354 324.092 1.00 66.39 ATOM 57 CA LEU A 278 8.688-103.291 326.410 1.00 47.56 ATOM 58 CA ALA A 279 5.767-104.214 328.650 1.00 46.52 ATOM 59 CA ASN A 280 4.618-106.788 331.168 1.00 68.87 ATOM 60 CA ILE A 281 2.492-108.456 328.508 1.00 67.68 ATOM 61 CA PRO A 282 3.049-111.960 327.083 1.00 60.52 ATOM 62 CA GLY A 283 5.718-111.641 324.410 1.00 47.03 ATOM 63 CA ALA A 284 6.382-108.002 325.266 1.00 41.08 ATOM 64 CA CYS A 285 9.258-108.564 327.727 1.00 35.22 ATOM 65 CA SER A 286 11.493-111.187 329.310 1.00 44.30 ATOM 66 CA GLY A 287 9.466-113.380 331.666 1.00 63.07 ATOM 67 CA ALA A 288 6.320-111.403 330.862 1.00 70.83 ATOM 68 CA GLY A 289 3.184-112.607 332.610 1.00 92.01 ATOM 69 CA THR A 290 5.116-114.133 335.474 1.00 95.07 ATOM 70 CA ALA A 291 7.056-113.404 338.677 1.00106.04 ATOM 71 CA ALA A 292 10.268-113.225 336.643 1.00 83.04 ATOM 72 CA ALA A 293 8.811-110.495 334.420 1.00 78.12 ATOM 73 CA THR A 294 11.307-107.719 333.618 1.00 69.37 ATOM 74 CA VAL A 295 10.365-104.679 331.527 1.00 65.71 ATOM 75 CA THR A 296 14.117-104.078 331.234 1.00 83.75 ATOM 76 CA THR A 297 14.712-106.973 328.834 1.00 59.01 ATOM 77 CA PRO A 298 12.788-107.907 325.674 1.00 51.35 ATOM 78 CA ASP A 299 11.461-111.386 324.880 1.00 51.88 ATOM 79 CA TYR A 300 14.142-111.666 322.180 1.00 65.24 ATOM 80 CA GLY A 301 12.432-114.404 320.217 1.00 53.26 ATOM 81 CA ASN A 302 9.332-112.220 320.100 1.00 54.46 ATOM 82 CA THR A 303 10.730-108.688 319.809 1.00 71.15 ATOM 83 CA GLY A 304 8.006-107.647 317.372 1.00 84.68 ATOM 84 CA THR A 305 4.324-106.844 318.043 1.00 83.15 ATOM 85 CA TYR A 306 1.146-105.832 316.249 1.00 70.85 ATOM 86 CA ASN A 307 -0.112-104.005 319.337 1.00 62.33 ATOM 87 CA GLU A 308 -0.252-100.280 318.496 1.00 34.39 ATOM 88 CA GLN A 309 -0.662 -99.577 322.221 1.00 67.47 ATOM 89 CA LEU A 310 3.092-100.155 322.433 1.00 59.49 ATOM 90 CA ALA A 311 4.175 -97.822 319.585 1.00 59.37 ATOM 91 CA VAL A 312 5.194 -94.204 320.401 1.00 65.97 ATOM 92 CA LEU A 313 4.219 -92.123 317.393 1.00 71.88 ATOM 93 CA ASP A 314 0.881 -90.398 318.058 1.00 76.75 ATOM 94 CA SER A 315 0.534 -88.419 314.830 1.00 69.08 ATOM 95 CA ALA A 316 2.636 -87.329 311.876 1.00 83.47 ATOM 96 CA LYS A 317 2.723 -85.343 308.653 1.00 93.51 ATOM 97 CA ILE A 318 5.238 -84.341 306.007 1.00 99.15 ATOM 98 CA GLN A 319 5.801 -80.787 304.805 1.00 52.20 ATOM 99 CA LEU A 320 7.133 -79.456 301.512 1.00 49.61 ATOM 100 CA ASN A 321 8.648 -76.004 301.759 1.00 42.02 ATOM 101 CA GLY A 322 6.642 -75.301 304.913 1.00 42.08 ATOM 102 CA GLN A 323 3.502 -76.417 303.113 1.00 61.15 ATOM 103 CA ASP A 324 1.603 -79.470 304.391 1.00 71.59 ATOM 104 CA ARG A 325 1.945 -82.402 301.977 1.00 83.04 ATOM 105 CA PHE A 326 -1.079 -83.835 303.733 1.00 91.89 ATOM 106 CA ALA A 327 -3.151 -83.404 306.883 1.00 77.75 ATOM 107 CA THR A 328 -1.976 -85.012 310.127 1.00 72.38 ATOM 108 CA ARG A 329 -2.795 -88.673 310.643 1.00 57.47 ATOM 109 CA LYS A 330 -2.253 -90.896 313.691 1.00 67.87 ATOM 110 CA GLY A 331 0.702 -93.263 313.799 1.00 74.05 ATOM 111 CA SER A 332 -1.641 -96.222 313.272 1.00 42.51 ATOM 112 CA TYR A 333 -2.516 -94.834 309.818 1.00 44.31 ATOM 113 CA PHE A 334 1.038 -95.131 308.482 1.00 61.89 ATOM 114 CA ASN A 335 1.357 -98.574 310.118 1.00 55.46 ATOM 115 CA LYS A 336 -1.976-100.113 309.091 1.00 48.14 ATOM 116 CA VAL A 337 -3.631 -98.064 306.290 1.00 46.31 ATOM 117 CA GLN A 338 -0.719 -96.962 304.089 1.00 36.22 ATOM 118 CA PRO A 339 0.487-100.609 303.932 1.00 43.73 ATOM 119 CA TYR A 340 -3.022-102.064 303.479 1.00 55.69 ATOM 120 CA GLN A 341 -3.608 -99.690 300.549 1.00 57.90 ATOM 121 CA SER A 342 -0.272-100.174 298.776 1.00 67.63 ATOM 122 CA ILE A 343 1.287-103.422 300.025 1.00 79.80 ATOM 123 CA GLY A 344 -1.411-105.816 301.183 1.00 78.64 ATOM 124 CA GLY A 345 0.389-107.605 303.996 1.00 67.30 ATOM 125 CA VAL A 346 0.645-106.791 307.700 1.00 64.79 ATOM 126 CA THR A 347 3.285-104.618 309.339 1.00 61.48 ATOM 127 CA PRO A 348 4.194-104.905 313.040 1.00 72.02 ATOM 128 CA ALA A 349 3.602-101.845 315.200 1.00 56.62 ATOM 129 CA GLY A 350 6.559 -99.459 315.175 1.00 76.83 ATOM 130 CA VAL A 351 7.098 -99.446 311.421 1.00 78.44 ATOM 131 CA TYR A 352 5.615 -96.637 309.348 1.00 75.49 ATOM 132 CA LEU A 353 5.226 -96.076 305.654 1.00 59.68 ATOM 133 CA TYR A 354 4.096 -93.255 303.424 1.00 69.70 ATOM 134 CA SER A 355 4.007 -94.077 299.747 1.00 69.95 ATOM 135 CA PHE A 356 4.242 -91.704 296.801 1.00 76.88 ATOM 136 CA ALA A 357 3.515 -94.709 294.567 1.00 97.26 ATOM 137 CA LEU A 358 0.460 -96.830 293.819 1.00 89.49 ATOM 138 CA LYS A 359 2.521-100.034 294.165 1.00 75.71 ATOM 139 CA PRO A 360 5.691 -99.378 296.246 1.00 80.01 ATOM 140 CA ALA A 361 6.639-103.046 296.198 1.00 72.43 ATOM 141 CA GLY A 362 6.552-103.082 292.401 1.00 57.45 ATOM 142 CA ARG A 363 9.684-102.572 290.306 1.00 78.24 ATOM 143 CA GLN A 364 7.858-100.660 287.570 1.00 74.11 ATOM 144 CA PRO A 365 7.347 -96.979 288.561 1.00 87.34 ATOM 145 CA SER A 366 3.831 -95.989 289.614 1.00 80.02 ATOM 146 CA GLY A 367 4.079 -92.771 291.552 1.00 93.42 ATOM 147 CA THR A 368 7.117 -90.762 292.575 1.00 90.03 ATOM 148 CA CYS A 369 8.185 -87.529 294.265 1.00 82.02 ATOM 149 CA ASN A 370 11.337 -85.656 293.277 1.00 76.93 ATOM 150 CA PHE A 371 13.268 -84.625 296.384 1.00 68.82 ATOM 151 CA SER A 372 15.974 -83.120 294.189 1.00 54.29 ATOM 152 CA ARG A 373 13.445 -80.358 293.705 1.00 58.75 ATOM 153 CA ILE A 374 12.148 -79.867 297.248 1.00 51.07 ATOM 154 CA ASP A 375 14.333 -77.305 298.975 1.00 33.15 ATOM 155 CA ASN A 376 12.803 -78.211 302.322 1.00 30.16 ATOM 156 CA ALA A 377 11.368 -81.602 303.255 1.00 65.75 ATOM 157 CA THR A 378 10.413 -82.086 306.910 1.00 78.01 ATOM 158 CA LEU A 379 8.756 -84.801 308.984 1.00102.35 ATOM 159 CA SER A 380 6.634 -83.338 311.779 1.00 68.64 ATOM 160 CA LEU A 381 6.328 -85.838 314.638 1.00 61.05 ATOM 161 CA THR A 382 4.232 -85.771 317.787 1.00 47.79 ATOM 162 CA TYR A 383 4.668 -88.541 320.324 1.00 49.31 ATOM 163 CA LYS A 384 2.180 -90.085 322.740 1.00 57.28 ATOM 164 CA THR A 385 2.521 -89.368 326.448 1.00 57.86 ATOM 165 CA CYS A 386 4.362 -92.381 327.857 1.00 46.51 ATOM 166 CA SER A 387 2.435 -92.526 331.125 1.00 63.35 ATOM 167 CA ILE A 388 1.244 -96.147 331.207 1.00 68.33 ATOM 168 CA ASP A 389 2.880 -98.330 333.847 1.00 58.70 ATOM 169 CA ALA A 390 4.769-100.860 331.711 1.00 52.73 ATOM 170 CA THR A 391 4.831-103.502 334.471 1.00 75.21 ATOM 171 CA SER A 392 1.033-103.598 334.756 1.00 72.95 ATOM 172 CA PRO A 393 -0.958-105.885 332.383 1.00 62.24 ATOM 173 CA ALA A 394 -4.284-104.285 333.351 1.00 48.82 ATOM 174 CA ALA A 395 -2.971-100.827 332.475 1.00 70.81 ATOM 175 CA VAL A 396 -1.331-101.718 329.139 1.00 68.69 ATOM 176 CA LEU A 397 -4.283-103.817 327.892 1.00 58.36 ATOM 177 CA GLY A 398 -6.962-101.321 328.926 1.00 60.21 ATOM 178 CA ASN A 399 -5.808 -97.869 327.853 1.00 92.76 ATOM 179 CA THR A 400 -6.297 -94.795 325.642 1.00114.56 ATOM 180 CA GLU A 401 -5.106 -94.061 322.079 1.00112.45 ATOM 181 CA THR A 402 -2.776 -91.198 323.000 1.00106.13 ATOM 182 CA VAL A 403 -0.570 -92.905 325.594 1.00 84.84 ATOM 183 CA THR A 404 2.023 -95.707 325.724 1.00 67.26 ATOM 184 CA ALA A 405 4.112 -97.330 328.442 1.00 52.40 ATOM 185 CA ASN A 406 6.891 -95.242 330.057 1.00 36.25 ATOM 186 CA THR A 407 9.197 -97.852 328.609 1.00 67.97 ATOM 187 CA ALA A 408 8.737 -95.901 325.354 1.00 76.64 ATOM 188 CA THR A 409 11.457 -93.438 326.417 1.00 73.56 ATOM 189 CA LEU A 410 14.150 -95.861 325.256 1.00 91.02 ATOM 190 CA LEU A 411 12.994 -95.725 321.628 1.00 74.31 ATOM 191 CA THR A 412 15.356 -92.874 320.705 1.00 56.57 ATOM 192 CA ALA A 413 16.845 -93.982 317.393 1.00 61.27 ATOM 193 CA LEU A 414 14.724 -92.533 314.574 1.00 50.01 ATOM 194 CA ASN A 415 15.561 -94.316 311.331 1.00 54.44 ATOM 195 CA ILE A 416 14.105 -92.784 308.185 1.00 54.42 ATOM 196 CA TYR A 417 14.480 -94.506 304.825 1.00 70.96 ATOM 197 CA ALA A 418 13.685 -93.370 301.302 1.00 58.55 ATOM 198 CA LYS A 419 13.775 -95.631 298.260 1.00 67.47 ATOM 199 CA ASN A 420 14.438 -93.833 295.007 1.00 56.92 ATOM 200 CA TYR A 421 14.906 -94.397 291.299 1.00 74.52 ATOM 201 CA ASN A 422 18.047 -93.623 289.319 1.00 66.69 ATOM 202 CA VAL A 423 19.510 -94.589 285.967 1.00 58.64 ATOM 203 CA LEU A 424 22.527 -96.833 285.456 1.00 51.26 ATOM 204 CA ARG A 425 24.028 -96.303 281.981 1.00 57.79 ATOM 205 CA ILE A 426 26.469 -98.921 280.678 1.00 47.53 ATOM 206 CA MET A 427 28.606 -98.529 277.586 1.00 45.41 ATOM 207 CA SER A 428 32.124 -99.017 276.255 1.00 70.87 ATOM 208 CA GLY A 429 32.986-101.437 279.033 1.00 64.75 ATOM 209 CA MET A 430 31.959 -99.304 281.980 1.00 65.68 ATOM 210 CA GLY A 431 28.948 -98.001 283.877 1.00 68.58 ATOM 211 CA GLY A 432 27.845 -95.087 286.003 1.00 69.45 ATOM 212 CA LEU A 433 24.800 -93.524 287.593 1.00 59.60 ATOM 213 CA ALA A 434 23.043 -90.839 285.571 1.00 54.54 ATOM 214 CA TYR A 435 22.257 -88.769 288.657 1.00 67.98 ATOM 215 CA ALA A 436 24.211 -87.933 291.791 1.00 88.21 ATOM 216 CA ASN A 437 22.975 -86.629 295.170 1.00106.49 TER