HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 B 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 B 197 THR PHE PHE LYS THR VAL TYR ARG ARG TYR THR ASN PHE SEQRES 2 B 197 ALA ILE GLU SER ILE GLN GLN THR ILE ASN GLY SER VAL SEQRES 3 B 197 GLY PHE GLY ASN LYS VAL SER THR GLN ILE SER ARG ASN SEQRES 4 B 197 GLY ASP LEU ILE THR ASP ILE VAL VAL GLU PHE VAL LEU SEQRES 5 B 197 THR LYS GLY GLY ASN GLY GLY THR THR TYR TYR PRO ALA SEQRES 6 B 197 GLU GLU LEU LEU GLN ASP VAL GLU LEU GLU ILE GLY GLY SEQRES 7 B 197 GLN ARG ILE ASP LYS HIS TYR ASN ASP TRP PHE ARG THR SEQRES 8 B 197 TYR ASP ALA LEU PHE ARG MET ASN ASP ASP ARG TYR ASN SEQRES 9 B 197 TYR ARG ARG MET THR ASP TRP VAL ASN ASN GLU LEU VAL SEQRES 10 B 197 GLY ALA GLN LYS ARG PHE TYR VAL PRO LEU ILE PHE PHE SEQRES 11 B 197 PHE ASN GLN THR PRO GLY LEU ALA LEU PRO LEU ILE ALA SEQRES 12 B 197 LEU GLN TYR HIS GLU VAL LYS LEU TYR PHE THR LEU ALA SEQRES 13 B 197 SER GLN VAL GLN GLY VAL ASN TYR ASN GLY SER SER ALA SEQRES 14 B 197 ILE ALA GLY ALA ALA GLN PRO THR MET SER VAL TRP VAL SEQRES 15 B 197 ASP TYR ILE PHE LEU ASP THR GLN GLU ARG THR ARG PHE SEQRES 16 B 197 ALA GLN ATOM 1 CA THR B 25 -9.520 -34.194 288.824 1.00 66.47 ATOM 2 CA PHE B 26 -9.939 -35.338 292.432 1.00 71.30 ATOM 3 CA PHE B 27 -12.990 -37.443 291.681 1.00 82.02 ATOM 4 CA LYS B 28 -11.758 -40.192 289.371 1.00 86.01 ATOM 5 CA THR B 29 -8.570 -41.741 290.678 1.00 98.86 ATOM 6 CA VAL B 30 -6.963 -44.337 288.407 1.00 81.99 ATOM 7 CA TYR B 31 -5.056 -46.693 290.713 1.00 82.65 ATOM 8 CA ARG B 32 -1.966 -48.417 289.381 1.00 73.75 ATOM 9 CA ARG B 33 -1.484 -52.090 288.590 1.00 63.38 ATOM 10 CA TYR B 34 1.426 -53.815 290.294 1.00 63.49 ATOM 11 CA THR B 35 3.546 -56.948 290.128 1.00 70.28 ATOM 12 CA ASN B 36 1.916 -60.064 291.606 1.00 73.48 ATOM 13 CA PHE B 37 3.565 -61.201 294.832 1.00 65.56 ATOM 14 CA ALA B 38 3.112 -62.931 298.184 1.00 73.11 ATOM 15 CA ILE B 39 4.650 -62.424 301.610 1.00 91.36 ATOM 16 CA GLU B 40 5.560 -64.828 304.379 1.00 84.28 ATOM 17 CA SER B 41 7.423 -64.488 307.666 1.00 72.69 ATOM 18 CA ILE B 42 9.713 -67.467 308.176 1.00 35.69 ATOM 19 CA GLN B 43 11.717 -68.227 311.308 1.00 33.39 ATOM 20 CA GLN B 44 15.500 -68.201 311.131 1.00 49.66 ATOM 21 CA THR B 45 17.972 -70.680 312.580 1.00 54.83 ATOM 22 CA ILE B 46 19.859 -68.950 315.362 1.00 52.93 ATOM 23 CA ASN B 47 23.507 -70.044 315.562 1.00 58.92 ATOM 24 CA GLY B 48 25.275 -70.215 318.913 1.00 57.28 ATOM 25 CA SER B 49 24.066 -70.262 322.494 1.00 43.77 ATOM 26 CA VAL B 50 21.512 -67.582 323.388 1.00 51.44 ATOM 27 CA GLY B 51 22.231 -65.807 326.658 1.00 66.04 ATOM 28 CA PHE B 52 23.309 -62.548 328.285 1.00 82.13 ATOM 29 CA GLY B 53 26.735 -61.574 326.986 1.00 51.65 ATOM 30 CA ASN B 54 26.742 -64.071 324.155 1.00 39.49 ATOM 31 CA LYS B 55 27.371 -63.439 320.468 1.00 32.86 ATOM 32 CA VAL B 56 24.994 -65.224 318.125 1.00 31.49 ATOM 33 CA SER B 57 24.512 -65.190 314.354 1.00 48.07 ATOM 34 CA THR B 58 22.196 -66.262 311.547 1.00 66.44 ATOM 35 CA GLN B 59 22.581 -66.939 307.838 1.00 65.87 ATOM 36 CA ILE B 60 19.318 -65.958 306.156 1.00 97.01 ATOM 37 CA SER B 61 17.837 -69.037 304.499 1.00 83.83 ATOM 38 CA ARG B 62 16.866 -68.850 300.837 1.00 73.24 ATOM 39 CA ASN B 63 13.143 -69.499 301.152 1.00 62.42 ATOM 40 CA GLY B 64 11.846 -66.452 299.355 1.00 55.31 ATOM 41 CA ASP B 65 12.984 -64.288 296.479 1.00 69.82 ATOM 42 CA LEU B 66 13.322 -61.018 298.399 1.00 67.37 ATOM 43 CA ILE B 67 13.533 -60.110 302.071 1.00 64.59 ATOM 44 CA THR B 68 12.189 -57.046 303.823 1.00 69.32 ATOM 45 CA ASP B 69 11.230 -56.960 307.506 1.00 80.04 ATOM 46 CA ILE B 70 13.214 -58.813 310.173 1.00 72.57 ATOM 47 CA VAL B 71 11.948 -59.086 313.752 1.00 60.40 ATOM 48 CA VAL B 72 13.873 -60.398 316.723 1.00 42.43 ATOM 49 CA GLU B 73 11.644 -61.988 319.369 1.00 33.77 ATOM 50 CA PHE B 74 12.642 -62.112 323.018 1.00 37.69 ATOM 51 CA VAL B 75 10.915 -63.529 326.080 1.00 51.96 ATOM 52 CA LEU B 76 12.019 -61.983 329.363 1.00 67.02 ATOM 53 CA THR B 77 10.812 -61.937 332.975 1.00 58.42 ATOM 54 CA LYS B 78 10.756 -58.819 335.200 1.00 76.17 ATOM 55 CA GLY B 79 12.966 -58.806 338.281 1.00 77.40 ATOM 56 CA GLY B 80 11.372 -55.718 339.787 1.00 76.33 ATOM 57 CA ASN B 81 8.050 -53.919 340.094 1.00 73.49 ATOM 58 CA GLY B 82 6.654 -50.859 338.315 1.00 62.38 ATOM 59 CA GLY B 83 8.891 -48.359 336.560 1.00 49.73 ATOM 60 CA THR B 84 11.894 -50.630 337.004 1.00 46.00 ATOM 61 CA THR B 85 12.368 -51.320 333.308 1.00 44.01 ATOM 62 CA TYR B 86 13.278 -49.144 330.307 1.00 61.21 ATOM 63 CA TYR B 87 13.257 -50.641 326.811 1.00 66.58 ATOM 64 CA PRO B 88 14.823 -53.968 327.967 1.00 63.66 ATOM 65 CA ALA B 89 14.335 -55.757 324.632 1.00 69.35 ATOM 66 CA GLU B 90 15.925 -52.827 322.843 1.00 76.00 ATOM 67 CA GLU B 91 18.922 -52.801 325.201 1.00 65.27 ATOM 68 CA LEU B 92 19.348 -56.594 324.984 1.00 84.72 ATOM 69 CA LEU B 93 20.181 -56.147 321.287 1.00 88.10 ATOM 70 CA GLN B 94 23.506 -54.423 321.968 1.00 59.53 ATOM 71 CA ASP B 95 24.340 -54.467 318.238 1.00 67.86 ATOM 72 CA VAL B 96 23.383 -56.063 314.920 1.00 76.80 ATOM 73 CA GLU B 97 25.665 -56.429 311.902 1.00 58.56 ATOM 74 CA LEU B 98 24.457 -57.090 308.356 1.00 78.52 ATOM 75 CA GLU B 99 26.974 -58.955 306.215 1.00 67.34 ATOM 76 CA ILE B 100 26.677 -59.959 302.544 1.00 72.22 ATOM 77 CA GLY B 101 29.225 -62.249 300.891 1.00 69.86 ATOM 78 CA GLY B 102 31.506 -61.809 303.882 1.00 62.00 ATOM 79 CA GLN B 103 31.394 -58.029 303.436 1.00 69.41 ATOM 80 CA ARG B 104 29.799 -55.838 306.075 1.00 73.98 ATOM 81 CA ILE B 105 26.989 -53.610 304.766 1.00 76.58 ATOM 82 CA ASP B 106 25.856 -51.944 307.992 1.00 70.26 ATOM 83 CA LYS B 107 25.867 -52.320 311.781 1.00 77.93 ATOM 84 CA HIS B 108 23.520 -50.896 314.419 1.00 94.71 ATOM 85 CA TYR B 109 23.829 -50.426 318.162 1.00 76.56 ATOM 86 CA ASN B 110 21.809 -50.157 321.347 1.00 60.90 ATOM 87 CA ASP B 111 22.086 -46.420 321.621 1.00 61.31 ATOM 88 CA TRP B 112 21.269 -46.000 317.917 1.00 80.04 ATOM 89 CA PHE B 113 17.889 -47.700 318.259 1.00 74.01 ATOM 90 CA ARG B 114 17.271 -45.453 321.282 1.00 60.80 ATOM 91 CA THR B 115 18.375 -42.335 319.374 1.00 68.27 ATOM 92 CA TYR B 116 16.400 -43.390 316.315 1.00 61.60 ATOM 93 CA ASP B 117 13.252 -43.830 318.379 1.00 69.74 ATOM 94 CA ALA B 118 13.731 -40.454 320.084 1.00 59.55 ATOM 95 CA LEU B 119 14.210 -38.715 316.751 1.00 27.74 ATOM 96 CA PHE B 120 12.321 -40.599 314.012 1.00 37.84 ATOM 97 CA ARG B 121 9.476 -42.502 315.639 1.00 60.78 ATOM 98 CA MET B 122 6.419 -40.626 316.908 1.00 70.23 ATOM 99 CA ASN B 123 2.902 -40.656 318.256 1.00 77.47 ATOM 100 CA ASP B 124 1.068 -44.021 318.566 1.00 77.25 ATOM 101 CA ASP B 125 3.712 -45.740 316.451 1.00 61.58 ATOM 102 CA ARG B 126 6.326 -44.790 319.029 1.00 65.96 ATOM 103 CA TYR B 127 4.069 -46.000 321.826 1.00 73.39 ATOM 104 CA ASN B 128 3.427 -49.276 320.006 1.00 56.93 ATOM 105 CA TYR B 129 7.204 -49.646 319.692 1.00 52.39 ATOM 106 CA ARG B 130 7.576 -49.391 323.466 1.00 62.94 ATOM 107 CA ARG B 131 4.868 -52.025 323.939 1.00 58.18 ATOM 108 CA MET B 132 6.991 -54.261 321.702 1.00 51.45 ATOM 109 CA THR B 133 10.154 -53.306 323.566 1.00 63.12 ATOM 110 CA ASP B 134 9.109 -53.469 327.235 1.00 69.90 ATOM 111 CA TRP B 135 6.578 -53.653 330.026 1.00 68.30 ATOM 112 CA VAL B 136 4.140 -50.751 329.821 1.00 73.69 ATOM 113 CA ASN B 137 1.346 -51.853 332.184 1.00 70.97 ATOM 114 CA ASN B 138 2.993 -51.567 335.616 1.00 63.86 ATOM 115 CA GLU B 139 3.933 -55.233 335.760 1.00 71.72 ATOM 116 CA LEU B 140 5.465 -56.643 338.938 1.00 71.42 ATOM 117 CA VAL B 141 8.270 -59.093 339.665 1.00 69.14 ATOM 118 CA GLY B 142 7.942 -62.371 337.789 1.00 44.65 ATOM 119 CA ALA B 143 5.920 -60.970 334.880 1.00 55.38 ATOM 120 CA GLN B 144 6.961 -62.688 331.610 1.00 68.51 ATOM 121 CA LYS B 145 6.488 -60.931 328.263 1.00 76.89 ATOM 122 CA ARG B 146 7.035 -61.477 324.529 1.00 72.62 ATOM 123 CA PHE B 147 9.177 -58.749 322.961 1.00 62.95 ATOM 124 CA TYR B 148 9.569 -57.860 319.291 1.00 56.57 ATOM 125 CA VAL B 149 12.500 -55.719 318.219 1.00 53.93 ATOM 126 CA PRO B 150 12.196 -54.596 314.560 1.00 61.78 ATOM 127 CA LEU B 151 15.488 -54.039 312.715 1.00 60.06 ATOM 128 CA ILE B 152 16.025 -50.824 310.750 1.00 64.72 ATOM 129 CA PHE B 153 18.443 -51.672 307.915 1.00 65.24 ATOM 130 CA PHE B 154 17.847 -50.211 304.441 1.00 75.52 ATOM 131 CA PHE B 155 15.815 -53.188 303.234 1.00 72.59 ATOM 132 CA ASN B 156 13.810 -53.248 306.503 1.00 63.55 ATOM 133 CA GLN B 157 12.571 -49.674 306.025 1.00 80.21 ATOM 134 CA THR B 158 11.189 -49.846 302.472 1.00 96.87 ATOM 135 CA PRO B 159 9.844 -52.648 300.314 1.00 86.57 ATOM 136 CA GLY B 160 11.384 -50.651 297.456 1.00 97.73 ATOM 137 CA LEU B 161 14.837 -51.579 298.726 1.00 81.83 ATOM 138 CA ALA B 162 13.949 -55.236 299.304 1.00 70.68 ATOM 139 CA LEU B 163 17.193 -57.256 299.296 1.00 76.66 ATOM 140 CA PRO B 164 17.006 -59.675 296.293 1.00 77.79 ATOM 141 CA LEU B 165 18.142 -63.091 297.531 1.00 72.84 ATOM 142 CA ILE B 166 17.602 -64.623 294.100 1.00 83.14 ATOM 143 CA ALA B 167 20.160 -62.153 292.779 1.00 66.60 ATOM 144 CA LEU B 168 22.702 -63.096 295.462 1.00 64.85 ATOM 145 CA GLN B 169 22.974 -66.775 294.571 1.00 75.40 ATOM 146 CA TYR B 170 26.662 -66.762 295.568 1.00 82.28 ATOM 147 CA HIS B 171 26.645 -64.274 298.437 1.00 73.58 ATOM 148 CA GLU B 172 25.538 -65.374 301.903 1.00 53.53 ATOM 149 CA VAL B 173 23.494 -62.878 303.897 1.00 72.47 ATOM 150 CA LYS B 174 24.255 -63.014 307.613 1.00 74.45 ATOM 151 CA LEU B 175 23.360 -61.187 310.811 1.00 84.17 ATOM 152 CA TYR B 176 25.567 -60.954 313.893 1.00 44.08 ATOM 153 CA PHE B 177 23.963 -60.129 317.246 1.00 46.72 ATOM 154 CA THR B 178 25.665 -59.339 320.538 1.00 26.38 ATOM 155 CA LEU B 179 23.363 -59.563 323.541 1.00 61.42 ATOM 156 CA ALA B 180 23.814 -57.144 326.433 1.00 57.47 ATOM 157 CA SER B 181 25.203 -58.762 329.567 1.00 59.49 ATOM 158 CA GLN B 182 23.294 -56.638 332.095 1.00 58.24 ATOM 159 CA VAL B 183 19.775 -55.381 331.476 1.00 52.55 ATOM 160 CA GLN B 184 18.179 -53.261 334.211 1.00 38.81 ATOM 161 CA GLY B 185 14.996 -54.632 335.748 1.00 53.66 ATOM 162 CA VAL B 186 15.576 -58.040 334.190 1.00 87.04 ATOM 163 CA ASN B 187 19.152 -59.211 334.700 1.00 80.94 ATOM 164 CA TYR B 188 20.343 -56.778 337.372 1.00 57.17 ATOM 165 CA ASN B 189 19.015 -53.966 339.548 1.00 49.84 ATOM 166 CA GLY B 190 21.712 -51.344 339.318 1.00 38.32 ATOM 167 CA SER B 191 25.064 -53.056 339.811 1.00 40.01 ATOM 168 CA SER B 192 23.458 -55.889 341.821 1.00 58.27 ATOM 169 CA ALA B 193 22.570 -59.075 339.979 1.00 54.66 ATOM 170 CA ILE B 194 19.010 -60.359 340.463 1.00 46.62 ATOM 171 CA ALA B 195 19.047 -63.937 341.734 1.00 39.51 ATOM 172 CA GLY B 196 17.064 -66.531 339.803 1.00 45.35 ATOM 173 CA ALA B 197 17.068 -64.176 336.809 1.00 41.58 ATOM 174 CA ALA B 198 16.094 -66.284 333.808 1.00 37.75 ATOM 175 CA GLN B 199 18.173 -66.231 330.634 1.00 47.16 ATOM 176 CA PRO B 200 16.655 -64.700 327.496 1.00 58.04 ATOM 177 CA THR B 201 14.864 -66.732 324.811 1.00 40.45 ATOM 178 CA MET B 202 15.521 -65.493 321.289 1.00 43.90 ATOM 179 CA SER B 203 13.890 -65.999 317.895 1.00 35.63 ATOM 180 CA VAL B 204 14.664 -64.401 314.508 1.00 52.20 ATOM 181 CA TRP B 205 11.958 -63.917 311.876 1.00 55.49 ATOM 182 CA VAL B 206 12.370 -62.737 308.281 1.00 79.51 ATOM 183 CA ASP B 207 9.681 -61.599 305.829 1.00 88.36 ATOM 184 CA TYR B 208 10.047 -63.026 302.315 1.00 61.89 ATOM 185 CA ILE B 209 8.500 -61.797 299.103 1.00 69.73 ATOM 186 CA PHE B 210 7.653 -64.459 296.534 1.00 62.51 ATOM 187 CA LEU B 211 7.630 -62.962 293.061 1.00 67.51 ATOM 188 CA ASP B 212 5.933 -63.992 289.856 1.00 60.12 ATOM 189 CA THR B 213 7.822 -65.676 286.985 1.00 62.23 ATOM 190 CA GLN B 214 8.056 -62.489 284.949 1.00 67.51 ATOM 191 CA GLU B 215 9.798 -60.377 287.584 1.00 70.20 ATOM 192 CA ARG B 216 11.737 -63.351 288.998 1.00 71.51 ATOM 193 CA THR B 217 13.551 -63.781 285.699 1.00 79.03 ATOM 194 CA ARG B 218 14.462 -60.117 285.652 1.00 78.69 ATOM 195 CA PHE B 219 15.710 -60.071 289.248 1.00 71.75 ATOM 196 CA ALA B 220 17.871 -63.055 288.373 1.00 75.49 ATOM 197 CA GLN B 221 19.009 -61.850 284.970 1.00 79.85 TER