HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 B 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 B 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 B 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 B 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 B 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 B 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 B 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 B 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 B 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 B 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 B 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 B 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 B 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 B 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 B 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 B 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 B 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 B 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU B 222 19.761 -58.122 285.202 1.00 67.34 ATOM 2 CA PRO B 223 22.328 -56.112 287.212 1.00 69.48 ATOM 3 CA HIS B 224 20.940 -54.138 290.160 1.00 60.49 ATOM 4 CA GLU B 225 21.963 -50.905 291.849 1.00 63.79 ATOM 5 CA TYR B 226 20.342 -49.945 295.131 1.00 43.07 ATOM 6 CA LEU B 227 20.816 -46.577 296.768 1.00 50.09 ATOM 7 CA ILE B 228 20.916 -47.550 300.441 1.00 52.71 ATOM 8 CA GLU B 229 21.724 -45.904 303.745 1.00 62.82 ATOM 9 CA GLN B 230 24.244 -46.735 306.432 1.00 59.47 ATOM 10 CA LEU B 231 24.969 -45.760 309.994 1.00 81.56 ATOM 11 CA GLN B 232 28.298 -44.367 311.224 1.00 67.52 ATOM 12 CA PHE B 233 29.412 -44.116 314.858 1.00 69.90 ATOM 13 CA THR B 234 32.279 -43.578 317.384 1.00 64.82 ATOM 14 CA GLY B 235 32.218 -43.193 321.218 1.00 61.19 ATOM 15 CA SER B 236 33.620 -39.941 322.721 1.00 52.47 ATOM 16 CA GLU B 237 34.093 -38.624 326.274 1.00 51.28 ATOM 17 CA THR B 238 32.217 -35.522 327.426 1.00 63.11 ATOM 18 CA ALA B 239 33.675 -33.105 329.959 1.00 70.16 ATOM 19 CA THR B 240 30.964 -30.913 331.507 1.00 70.89 ATOM 20 CA PRO B 241 32.032 -28.028 333.875 1.00 72.21 ATOM 21 CA SER B 242 31.191 -28.888 337.448 1.00 67.29 ATOM 22 CA ALA B 243 30.613 -25.181 338.105 1.00 77.61 ATOM 23 CA THR B 244 32.092 -21.678 338.001 1.00 85.27 ATOM 24 CA THR B 245 32.924 -22.583 334.398 1.00 77.65 ATOM 25 CA GLN B 246 31.389 -23.643 331.090 1.00 79.01 ATOM 26 CA ALA B 247 33.614 -26.329 329.572 1.00 57.48 ATOM 27 CA SER B 248 34.033 -26.736 325.818 1.00 51.78 ATOM 28 CA GLN B 249 35.378 -29.207 323.265 1.00 49.23 ATOM 29 CA ASN B 250 35.986 -29.827 319.582 1.00 52.80 ATOM 30 CA ILE B 251 35.205 -33.378 318.576 1.00 71.40 ATOM 31 CA ARG B 252 36.926 -34.045 315.260 1.00 70.65 ATOM 32 CA LEU B 253 34.282 -36.002 313.333 1.00 98.71 ATOM 33 CA ASN B 254 35.497 -38.929 311.219 1.00 90.89 ATOM 34 CA PHE B 255 32.679 -39.556 308.755 1.00 84.76 ATOM 35 CA ASN B 256 32.468 -40.174 305.008 1.00 73.51 ATOM 36 CA HIS B 257 30.126 -40.360 302.006 1.00 64.75 ATOM 37 CA PRO B 258 27.048 -38.183 301.262 1.00 69.90 ATOM 38 CA THR B 259 25.516 -37.648 304.729 1.00 56.40 ATOM 39 CA LYS B 260 21.818 -36.850 305.376 1.00 65.12 ATOM 40 CA TYR B 261 22.232 -35.781 308.969 1.00 50.87 ATOM 41 CA LEU B 262 24.109 -36.008 312.256 1.00 59.41 ATOM 42 CA ALA B 263 22.523 -37.154 315.512 1.00 72.46 ATOM 43 CA TRP B 264 24.189 -37.084 318.894 1.00 61.74 ATOM 44 CA ASN B 265 23.581 -37.442 322.624 1.00 59.56 ATOM 45 CA PHE B 266 25.477 -37.184 325.911 1.00 48.65 ATOM 46 CA ASN B 267 24.754 -40.270 327.990 1.00 65.69 ATOM 47 CA ASN B 268 25.542 -41.568 331.482 1.00 82.87 ATOM 48 CA PRO B 269 27.103 -44.990 330.736 1.00 96.98 ATOM 49 CA THR B 270 25.742 -46.373 334.019 1.00 78.52 ATOM 50 CA ASN B 271 22.128 -45.899 332.905 1.00 84.20 ATOM 51 CA TYR B 272 20.950 -47.082 329.481 1.00 86.32 ATOM 52 CA GLY B 273 19.017 -44.269 327.808 1.00 81.92 ATOM 53 CA GLN B 274 19.939 -41.570 330.320 1.00 81.13 ATOM 54 CA TYR B 275 20.653 -38.536 328.171 1.00 71.95 ATOM 55 CA THR B 276 19.581 -36.073 330.858 1.00 71.57 ATOM 56 CA ALA B 277 20.770 -35.118 334.378 1.00 72.59 ATOM 57 CA LEU B 278 19.015 -36.804 337.306 1.00 57.32 ATOM 58 CA ALA B 279 17.124 -34.406 339.561 1.00 47.78 ATOM 59 CA ASN B 280 14.777 -34.299 342.521 1.00 65.02 ATOM 60 CA ILE B 281 11.851 -33.673 340.193 1.00 67.84 ATOM 61 CA PRO B 282 8.933 -36.068 339.587 1.00 67.90 ATOM 62 CA GLY B 283 10.115 -38.604 337.029 1.00 54.27 ATOM 63 CA ALA B 284 13.672 -37.279 337.106 1.00 49.30 ATOM 64 CA CYS B 285 15.058 -39.666 339.755 1.00 41.23 ATOM 65 CA SER B 286 14.231 -42.636 341.966 1.00 45.04 ATOM 66 CA GLY B 287 11.736 -41.611 344.649 1.00 57.34 ATOM 67 CA ALA B 288 11.685 -38.058 343.298 1.00 63.12 ATOM 68 CA GLY B 289 9.365 -35.686 345.123 1.00 91.20 ATOM 69 CA THR B 290 9.523 -37.673 348.332 1.00 96.01 ATOM 70 CA ALA B 291 11.649 -38.516 351.385 1.00 99.74 ATOM 71 CA ALA B 292 13.095 -41.493 349.504 1.00 68.35 ATOM 72 CA ALA B 293 14.300 -39.237 346.682 1.00 63.03 ATOM 73 CA THR B 294 17.782 -40.151 345.410 1.00 59.02 ATOM 74 CA VAL B 295 19.534 -38.169 342.670 1.00 59.40 ATOM 75 CA THR B 296 21.894 -41.151 342.422 1.00 83.68 ATOM 76 CA THR B 297 19.351 -43.425 340.734 1.00 56.27 ATOM 77 CA PRO B 298 17.066 -42.689 337.769 1.00 54.31 ATOM 78 CA ASP B 299 13.317 -43.357 337.689 1.00 57.63 ATOM 79 CA TYR B 300 13.995 -46.198 335.233 1.00 64.19 ATOM 80 CA GLY B 301 10.486 -46.347 333.835 1.00 53.59 ATOM 81 CA ASN B 302 10.747 -42.632 333.111 1.00 58.84 ATOM 82 CA THR B 303 14.396 -42.158 332.126 1.00 73.83 ATOM 83 CA GLY B 304 13.496 -39.667 329.403 1.00 83.08 ATOM 84 CA THR B 305 12.421 -36.007 329.719 1.00 85.01 ATOM 85 CA TYR B 306 11.372 -33.042 327.610 1.00 78.51 ATOM 86 CA ASN B 307 12.789 -30.615 330.171 1.00 63.82 ATOM 87 CA GLU B 308 15.732 -28.804 328.540 1.00 51.91 ATOM 88 CA GLN B 309 16.733 -27.563 332.000 1.00 66.34 ATOM 89 CA LEU B 310 18.180 -31.043 332.500 1.00 64.96 ATOM 90 CA ALA B 311 20.235 -31.260 329.267 1.00 63.97 ATOM 91 CA VAL B 312 23.947 -30.256 329.323 1.00 58.83 ATOM 92 CA LEU B 313 24.718 -28.845 325.897 1.00 65.75 ATOM 93 CA ASP B 314 24.598 -25.034 326.025 1.00 67.05 ATOM 94 CA SER B 315 25.565 -24.246 322.432 1.00 74.55 ATOM 95 CA ALA B 316 27.068 -25.961 319.410 1.00 84.94 ATOM 96 CA LYS B 317 28.261 -25.543 315.839 1.00 86.35 ATOM 97 CA ILE B 318 29.946 -27.611 313.154 1.00 91.68 ATOM 98 CA GLN B 319 33.042 -26.542 311.239 1.00 60.15 ATOM 99 CA LEU B 320 34.300 -27.526 307.797 1.00 51.53 ATOM 100 CA ASN B 321 38.030 -27.114 307.359 1.00 56.74 ATOM 101 CA GLY B 322 38.128 -24.579 310.196 1.00 66.63 ATOM 102 CA GLN B 323 35.296 -22.684 308.542 1.00 62.10 ATOM 103 CA ASP B 324 31.963 -22.348 310.362 1.00 67.03 ATOM 104 CA ARG B 325 29.257 -24.426 308.658 1.00 81.36 ATOM 105 CA PHE B 326 26.799 -22.260 310.545 1.00 83.05 ATOM 106 CA ALA B 327 26.635 -19.802 313.434 1.00 72.30 ATOM 107 CA THR B 328 26.404 -21.119 316.996 1.00 79.29 ATOM 108 CA ARG B 329 22.974 -22.120 318.256 1.00 73.18 ATOM 109 CA LYS B 330 21.870 -23.221 321.733 1.00 72.29 ATOM 110 CA GLY B 331 21.381 -26.901 322.481 1.00 73.88 ATOM 111 CA SER B 332 17.603 -26.402 322.506 1.00 51.60 ATOM 112 CA TYR B 333 17.766 -25.480 318.797 1.00 45.14 ATOM 113 CA PHE B 334 19.095 -28.882 317.715 1.00 68.36 ATOM 114 CA ASN B 335 16.611 -30.592 320.071 1.00 59.06 ATOM 115 CA LYS B 336 13.451 -28.622 319.253 1.00 51.94 ATOM 116 CA VAL B 337 13.886 -26.612 316.006 1.00 47.51 ATOM 117 CA GLN B 338 15.932 -28.907 313.748 1.00 32.93 ATOM 118 CA PRO B 339 13.431 -31.743 314.438 1.00 45.93 ATOM 119 CA TYR B 340 10.348 -29.497 314.155 1.00 68.88 ATOM 120 CA GLN B 341 11.576 -28.269 310.758 1.00 67.80 ATOM 121 CA SER B 342 12.565 -31.636 309.283 1.00 74.84 ATOM 122 CA ILE B 343 10.810 -34.377 311.271 1.00 71.59 ATOM 123 CA GLY B 344 7.609 -33.049 312.799 1.00 81.77 ATOM 124 CA GLY B 345 7.472 -35.054 316.009 1.00 68.38 ATOM 125 CA VAL B 346 8.898 -34.335 319.458 1.00 62.94 ATOM 126 CA THR B 347 12.345 -35.308 320.703 1.00 52.88 ATOM 127 CA PRO B 348 13.171 -35.687 324.416 1.00 75.71 ATOM 128 CA ALA B 349 15.817 -33.368 325.835 1.00 64.55 ATOM 129 CA GLY B 350 19.331 -34.758 325.425 1.00 73.76 ATOM 130 CA VAL B 351 18.995 -35.767 321.784 1.00 81.64 ATOM 131 CA TYR B 352 20.281 -33.430 319.088 1.00 85.24 ATOM 132 CA LEU B 353 19.951 -33.364 315.346 1.00 74.78 ATOM 133 CA TYR B 354 21.399 -31.346 312.512 1.00 82.50 ATOM 134 CA SER B 355 20.053 -32.212 309.101 1.00 73.93 ATOM 135 CA PHE B 356 21.695 -31.692 305.723 1.00 76.61 ATOM 136 CA ALA B 357 18.414 -32.857 304.163 1.00 97.87 ATOM 137 CA LEU B 358 14.949 -31.368 303.757 1.00 98.62 ATOM 138 CA LYS B 359 13.340 -34.653 304.879 1.00 89.14 ATOM 139 CA PRO B 360 15.842 -36.756 306.906 1.00 88.90 ATOM 140 CA ALA B 361 13.210 -39.365 307.696 1.00 72.13 ATOM 141 CA GLY B 362 12.510 -39.866 303.996 1.00 62.54 ATOM 142 CA ARG B 363 14.185 -42.623 301.982 1.00 77.79 ATOM 143 CA GLN B 364 14.426 -40.524 298.819 1.00 77.82 ATOM 144 CA PRO B 365 17.447 -38.146 298.966 1.00 99.30 ATOM 145 CA SER B 366 16.676 -34.482 299.623 1.00 94.29 ATOM 146 CA GLY B 367 19.845 -32.844 300.829 1.00 90.60 ATOM 147 CA THR B 368 23.251 -34.331 301.525 1.00 75.75 ATOM 148 CA CYS B 369 26.809 -33.429 302.522 1.00 76.97 ATOM 149 CA ASN B 370 29.827 -35.376 301.294 1.00 71.73 ATOM 150 CA PHE B 371 32.190 -36.077 304.186 1.00 67.56 ATOM 151 CA SER B 372 34.471 -38.000 301.840 1.00 52.03 ATOM 152 CA ARG B 373 35.449 -34.550 300.657 1.00 49.80 ATOM 153 CA ILE B 374 35.791 -32.672 303.949 1.00 38.06 ATOM 154 CA ASP B 375 39.350 -33.051 305.177 1.00 46.49 ATOM 155 CA ASN B 376 38.360 -31.683 308.569 1.00 39.56 ATOM 156 CA ALA B 377 34.918 -31.960 310.149 1.00 64.91 ATOM 157 CA THR B 378 34.626 -30.836 313.776 1.00 73.15 ATOM 158 CA LEU B 379 31.830 -30.426 316.313 1.00 88.11 ATOM 159 CA SER B 380 32.452 -27.476 318.629 1.00 53.47 ATOM 160 CA LEU B 381 30.653 -28.008 321.945 1.00 64.08 ATOM 161 CA THR B 382 30.165 -25.707 324.908 1.00 51.09 ATOM 162 CA TYR B 383 28.461 -27.057 328.000 1.00 56.63 ATOM 163 CA LYS B 384 26.292 -25.311 330.581 1.00 66.74 ATOM 164 CA THR B 385 27.681 -24.710 334.056 1.00 78.35 ATOM 165 CA CYS B 386 26.295 -27.553 336.165 1.00 52.26 ATOM 166 CA SER B 387 25.735 -25.486 339.298 1.00 55.24 ATOM 167 CA ILE B 388 22.081 -26.209 340.109 1.00 61.16 ATOM 168 CA ASP B 389 21.496 -28.294 343.227 1.00 72.24 ATOM 169 CA ALA B 390 19.960 -31.465 341.775 1.00 59.28 ATOM 170 CA THR B 391 18.210 -32.398 345.043 1.00 78.87 ATOM 171 CA SER B 392 16.251 -29.134 345.172 1.00 76.69 ATOM 172 CA PRO B 393 12.917 -28.882 343.264 1.00 60.98 ATOM 173 CA ALA B 394 12.747 -25.095 343.714 1.00 48.32 ATOM 174 CA ALA B 395 16.194 -24.672 342.171 1.00 65.11 ATOM 175 CA VAL B 396 15.722 -27.008 339.182 1.00 57.79 ATOM 176 CA LEU B 397 12.243 -25.673 338.289 1.00 56.00 ATOM 177 CA GLY B 398 13.171 -21.998 338.638 1.00 60.58 ATOM 178 CA ASN B 399 16.499 -21.471 336.896 1.00 75.41 ATOM 179 CA THR B 400 18.489 -19.878 334.054 1.00110.30 ATOM 180 CA GLU B 401 19.126 -21.070 330.474 1.00120.02 ATOM 181 CA THR B 402 22.882 -21.548 330.855 1.00116.89 ATOM 182 CA VAL B 403 22.981 -23.896 333.852 1.00 95.91 ATOM 183 CA THR B 404 21.945 -27.473 334.700 1.00 69.44 ATOM 184 CA ALA B 405 22.078 -29.663 337.795 1.00 53.84 ATOM 185 CA ASN B 406 25.518 -30.802 339.042 1.00 44.16 ATOM 186 CA THR B 407 24.239 -34.270 338.297 1.00 64.80 ATOM 187 CA ALA B 408 25.120 -33.404 334.679 1.00 69.56 ATOM 188 CA THR B 409 28.757 -34.389 335.304 1.00 69.63 ATOM 189 CA LEU B 410 27.881 -38.060 334.815 1.00 81.83 ATOM 190 CA LEU B 411 26.813 -37.532 331.196 1.00 71.41 ATOM 191 CA THR B 412 30.270 -38.314 329.784 1.00 57.20 ATOM 192 CA ALA B 413 29.543 -40.622 326.859 1.00 55.42 ATOM 193 CA LEU B 414 29.229 -38.504 323.703 1.00 35.81 ATOM 194 CA ASN B 415 27.611 -40.571 320.962 1.00 46.84 ATOM 195 CA ILE B 416 27.651 -39.034 317.498 1.00 47.29 ATOM 196 CA TYR B 417 25.831 -40.690 314.611 1.00 74.10 ATOM 197 CA ALA B 418 25.810 -39.970 310.893 1.00 58.34 ATOM 198 CA LYS B 419 23.441 -41.597 308.418 1.00 65.29 ATOM 199 CA ASN B 420 24.763 -41.771 304.887 1.00 55.02 ATOM 200 CA TYR B 421 23.912 -42.995 301.413 1.00 72.53 ATOM 201 CA ASN B 422 25.831 -45.613 299.455 1.00 63.30 ATOM 202 CA VAL B 423 25.204 -47.838 296.460 1.00 59.30 ATOM 203 CA LEU B 424 24.749 -51.602 296.582 1.00 51.10 ATOM 204 CA ARG B 425 25.386 -53.149 293.143 1.00 61.02 ATOM 205 CA ILE B 426 24.191 -56.715 292.546 1.00 51.87 ATOM 206 CA MET B 427 25.098 -58.820 289.541 1.00 68.23 ATOM 207 CA SER B 428 26.248 -62.282 288.504 1.00 83.54 ATOM 208 CA GLY B 429 25.094 -63.793 291.775 1.00 75.51 ATOM 209 CA MET B 430 26.863 -61.437 294.145 1.00 75.34 ATOM 210 CA GLY B 431 26.753 -57.931 295.577 1.00 67.78 ATOM 211 CA GLY B 432 29.011 -55.251 296.971 1.00 77.26 ATOM 212 CA LEU B 433 29.051 -51.635 298.050 1.00 64.67 ATOM 213 CA ALA B 434 30.101 -49.112 295.418 1.00 71.52 ATOM 214 CA TYR B 435 31.964 -46.974 297.945 1.00 75.34 ATOM 215 CA ALA B 436 34.176 -47.788 300.908 1.00 79.52 ATOM 216 CA ASN B 437 35.211 -45.592 303.867 1.00106.91 TER