HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 C 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 C 197 THR PHE PHE LYS THR VAL TYR ARG ARG TYR THR ASN PHE SEQRES 2 C 197 ALA ILE GLU SER ILE GLN GLN THR ILE ASN GLY SER VAL SEQRES 3 C 197 GLY PHE GLY ASN LYS VAL SER THR GLN ILE SER ARG ASN SEQRES 4 C 197 GLY ASP LEU ILE THR ASP ILE VAL VAL GLU PHE VAL LEU SEQRES 5 C 197 THR LYS GLY GLY ASN GLY GLY THR THR TYR TYR PRO ALA SEQRES 6 C 197 GLU GLU LEU LEU GLN ASP VAL GLU LEU GLU ILE GLY GLY SEQRES 7 C 197 GLN ARG ILE ASP LYS HIS TYR ASN ASP TRP PHE ARG THR SEQRES 8 C 197 TYR ASP ALA LEU PHE ARG MET ASN ASP ASP ARG TYR ASN SEQRES 9 C 197 TYR ARG ARG MET THR ASP TRP VAL ASN ASN GLU LEU VAL SEQRES 10 C 197 GLY ALA GLN LYS ARG PHE TYR VAL PRO LEU ILE PHE PHE SEQRES 11 C 197 PHE ASN GLN THR PRO GLY LEU ALA LEU PRO LEU ILE ALA SEQRES 12 C 197 LEU GLN TYR HIS GLU VAL LYS LEU TYR PHE THR LEU ALA SEQRES 13 C 197 SER GLN VAL GLN GLY VAL ASN TYR ASN GLY SER SER ALA SEQRES 14 C 197 ILE ALA GLY ALA ALA GLN PRO THR MET SER VAL TRP VAL SEQRES 15 C 197 ASP TYR ILE PHE LEU ASP THR GLN GLU ARG THR ARG PHE SEQRES 16 C 197 ALA GLN ATOM 1 CA THR C 25 6.313 -52.768 291.348 1.00 65.41 ATOM 2 CA PHE C 26 6.746 -52.043 295.061 1.00 67.91 ATOM 3 CA PHE C 27 10.142 -53.704 295.251 1.00 76.78 ATOM 4 CA LYS C 28 12.402 -51.605 293.041 1.00 83.51 ATOM 5 CA THR C 29 11.970 -47.920 293.761 1.00 98.95 ATOM 6 CA VAL C 30 13.915 -45.573 291.486 1.00 81.63 ATOM 7 CA TYR C 31 14.571 -42.439 293.553 1.00 76.14 ATOM 8 CA ARG C 32 14.881 -39.126 291.756 1.00 68.67 ATOM 9 CA ARG C 33 17.972 -36.988 291.288 1.00 53.87 ATOM 10 CA TYR C 34 17.737 -33.400 292.473 1.00 61.62 ATOM 11 CA THR C 35 19.472 -30.045 292.184 1.00 70.60 ATOM 12 CA ASN C 36 22.607 -29.670 294.325 1.00 79.39 ATOM 13 CA PHE C 37 22.144 -27.239 297.205 1.00 68.37 ATOM 14 CA ALA C 38 23.150 -26.287 300.742 1.00 68.41 ATOM 15 CA ILE C 39 21.287 -24.740 303.657 1.00 86.84 ATOM 16 CA GLU C 40 22.354 -22.371 306.396 1.00 82.38 ATOM 17 CA SER C 41 20.509 -20.482 309.124 1.00 73.09 ATOM 18 CA ILE C 42 21.892 -16.965 309.429 1.00 44.50 ATOM 19 CA GLN C 43 20.961 -14.428 312.095 1.00 43.05 ATOM 20 CA GLN C 44 19.202 -11.234 311.071 1.00 53.83 ATOM 21 CA THR C 45 19.872 -7.680 312.192 1.00 62.07 ATOM 22 CA ILE C 46 16.930 -6.538 314.269 1.00 45.56 ATOM 23 CA ASN C 47 16.119 -2.848 313.764 1.00 50.80 ATOM 24 CA GLY C 48 14.747 -0.774 316.631 1.00 49.72 ATOM 25 CA SER C 49 14.613 -1.277 320.372 1.00 53.55 ATOM 26 CA VAL C 50 13.320 -4.673 321.517 1.00 57.52 ATOM 27 CA GLY C 51 10.785 -4.483 324.327 1.00 78.23 ATOM 28 CA PHE C 52 7.143 -4.961 325.302 1.00 98.16 ATOM 29 CA GLY C 53 4.970 -2.705 323.165 1.00 57.98 ATOM 30 CA ASN C 54 7.698 -1.851 320.697 1.00 41.73 ATOM 31 CA LYS C 55 7.624 -2.151 316.919 1.00 32.92 ATOM 32 CA VAL C 56 10.753 -3.623 315.381 1.00 26.16 ATOM 33 CA SER C 57 11.728 -4.583 311.834 1.00 48.37 ATOM 34 CA THR C 58 14.314 -6.424 309.755 1.00 72.29 ATOM 35 CA GLN C 59 15.481 -6.281 306.152 1.00 80.02 ATOM 36 CA ILE C 60 16.515 -9.796 305.148 1.00 89.31 ATOM 37 CA SER C 61 20.197 -9.759 304.218 1.00 87.26 ATOM 38 CA ARG C 62 21.246 -11.198 300.869 1.00 78.50 ATOM 39 CA ASN C 63 23.482 -14.012 302.083 1.00 76.49 ATOM 40 CA GLY C 64 21.846 -16.899 300.298 1.00 59.38 ATOM 41 CA ASP C 65 20.046 -17.413 297.020 1.00 68.05 ATOM 42 CA LEU C 66 16.681 -18.491 298.443 1.00 79.83 ATOM 43 CA ILE C 67 15.045 -18.243 301.851 1.00 69.52 ATOM 44 CA THR C 68 12.679 -20.675 303.509 1.00 63.80 ATOM 45 CA ASP C 69 12.293 -21.017 307.281 1.00 84.42 ATOM 46 CA ILE C 70 12.405 -18.018 309.621 1.00 88.01 ATOM 47 CA VAL C 71 12.493 -18.456 313.400 1.00 77.62 ATOM 48 CA VAL C 72 12.104 -15.735 315.988 1.00 57.23 ATOM 49 CA GLU C 73 13.967 -16.472 319.227 1.00 49.80 ATOM 50 CA PHE C 74 12.853 -15.037 322.551 1.00 46.10 ATOM 51 CA VAL C 75 14.246 -15.374 326.060 1.00 59.06 ATOM 52 CA LEU C 76 11.722 -14.738 328.818 1.00 57.19 ATOM 53 CA THR C 77 11.505 -15.284 332.582 1.00 54.42 ATOM 54 CA LYS C 78 8.389 -16.575 334.403 1.00 81.11 ATOM 55 CA GLY C 79 6.708 -14.257 336.889 1.00 90.20 ATOM 56 CA GLY C 80 4.491 -16.950 338.365 1.00 78.92 ATOM 57 CA ASN C 81 4.439 -20.642 339.211 1.00 71.39 ATOM 58 CA GLY C 82 2.829 -23.617 337.467 1.00 69.86 ATOM 59 CA GLY C 83 -0.002 -23.205 334.985 1.00 66.45 ATOM 60 CA THR C 84 0.450 -19.442 334.993 1.00 50.10 ATOM 61 CA THR C 85 1.582 -19.211 331.383 1.00 50.93 ATOM 62 CA TYR C 86 -0.093 -19.947 328.035 1.00 54.55 ATOM 63 CA TYR C 87 1.925 -19.711 324.820 1.00 60.90 ATOM 64 CA PRO C 88 3.814 -16.547 325.952 1.00 67.62 ATOM 65 CA ALA C 89 6.269 -16.541 323.032 1.00 69.66 ATOM 66 CA GLU C 90 3.374 -16.901 320.618 1.00 83.48 ATOM 67 CA GLU C 91 1.460 -14.019 322.226 1.00 73.08 ATOM 68 CA LEU C 92 4.568 -11.791 322.338 1.00 95.59 ATOM 69 CA LEU C 93 4.556 -11.824 318.523 1.00 97.43 ATOM 70 CA GLN C 94 1.376 -9.747 318.244 1.00 70.58 ATOM 71 CA ASP C 95 1.796 -9.540 314.450 1.00 73.59 ATOM 72 CA VAL C 96 4.299 -10.030 311.628 1.00 83.82 ATOM 73 CA GLU C 97 4.169 -8.324 308.235 1.00 64.60 ATOM 74 CA LEU C 98 6.036 -9.530 305.145 1.00 98.49 ATOM 75 CA GLU C 99 6.900 -6.747 302.713 1.00 82.90 ATOM 76 CA ILE C 100 8.662 -7.019 299.334 1.00 84.21 ATOM 77 CA GLY C 101 9.776 -3.931 297.417 1.00 60.38 ATOM 78 CA GLY C 102 7.712 -1.778 299.749 1.00 67.38 ATOM 79 CA GLN C 103 4.607 -3.828 298.926 1.00 69.52 ATOM 80 CA ARG C 104 2.929 -5.911 301.598 1.00 80.05 ATOM 81 CA ILE C 105 2.601 -9.613 300.717 1.00 73.64 ATOM 82 CA ASP C 106 1.032 -10.955 303.912 1.00 66.60 ATOM 83 CA LYS C 107 0.568 -10.225 307.617 1.00 73.02 ATOM 84 CA HIS C 108 -0.099 -12.567 310.542 1.00 96.11 ATOM 85 CA TYR C 109 -1.421 -12.009 314.045 1.00 87.42 ATOM 86 CA ASN C 110 -1.365 -13.420 317.554 1.00 66.35 ATOM 87 CA ASP C 111 -4.763 -15.012 317.345 1.00 63.24 ATOM 88 CA TRP C 112 -3.974 -16.444 313.894 1.00 88.76 ATOM 89 CA PHE C 113 -1.004 -18.432 315.174 1.00 87.80 ATOM 90 CA ARG C 114 -3.267 -19.657 317.991 1.00 63.26 ATOM 91 CA THR C 115 -6.070 -20.541 315.552 1.00 57.14 ATOM 92 CA TYR C 116 -3.605 -22.136 313.149 1.00 62.32 ATOM 93 CA ASP C 117 -2.179 -24.313 315.905 1.00 72.87 ATOM 94 CA ALA C 118 -5.656 -25.349 317.075 1.00 56.45 ATOM 95 CA LEU C 119 -6.685 -26.281 313.552 1.00 27.92 ATOM 96 CA PHE C 120 -3.616 -27.341 311.529 1.00 47.83 ATOM 97 CA ARG C 121 -0.984 -28.590 313.954 1.00 56.21 ATOM 98 CA MET C 122 -1.430 -31.958 315.664 1.00 71.88 ATOM 99 CA ASN C 123 -0.033 -34.761 317.762 1.00 80.43 ATOM 100 CA ASP C 124 3.651 -34.603 318.847 1.00 74.17 ATOM 101 CA ASP C 125 4.326 -31.783 316.394 1.00 60.07 ATOM 102 CA ARG C 126 1.754 -29.658 318.197 1.00 64.09 ATOM 103 CA TYR C 127 3.272 -30.586 321.545 1.00 68.17 ATOM 104 CA ASN C 128 6.764 -29.756 320.290 1.00 51.55 ATOM 105 CA TYR C 129 5.376 -26.387 319.177 1.00 47.53 ATOM 106 CA ARG C 130 4.207 -25.663 322.720 1.00 58.07 ATOM 107 CA ARG C 131 7.637 -26.593 324.076 1.00 57.33 ATOM 108 CA MET C 132 9.029 -23.981 321.681 1.00 52.67 ATOM 109 CA THR C 133 6.340 -21.490 322.670 1.00 54.19 ATOM 110 CA ASP C 134 6.211 -21.783 326.476 1.00 66.45 ATOM 111 CA TRP C 135 6.980 -23.459 329.766 1.00 75.17 ATOM 112 CA VAL C 136 5.669 -27.021 329.794 1.00 74.56 ATOM 113 CA ASN C 137 7.435 -28.523 332.833 1.00 73.62 ATOM 114 CA ASN C 138 5.711 -26.775 335.752 1.00 69.40 ATOM 115 CA GLU C 139 8.389 -24.117 336.084 1.00 72.95 ATOM 116 CA LEU C 140 8.227 -21.655 338.973 1.00 74.99 ATOM 117 CA VAL C 141 8.867 -17.929 339.317 1.00 78.57 ATOM 118 CA GLY C 142 12.225 -16.836 337.936 1.00 51.26 ATOM 119 CA ALA C 143 12.567 -19.675 335.419 1.00 58.33 ATOM 120 CA GLN C 144 14.233 -18.391 332.208 1.00 67.12 ATOM 121 CA LYS C 145 13.636 -20.146 328.883 1.00 77.89 ATOM 122 CA ARG C 146 14.620 -19.936 325.203 1.00 81.36 ATOM 123 CA PHE C 147 11.600 -19.689 322.902 1.00 63.05 ATOM 124 CA TYR C 148 11.410 -20.318 319.164 1.00 56.79 ATOM 125 CA VAL C 149 8.418 -19.034 317.231 1.00 58.06 ATOM 126 CA PRO C 150 8.353 -20.373 313.637 1.00 64.13 ATOM 127 CA LEU C 151 6.714 -18.101 311.044 1.00 62.21 ATOM 128 CA ILE C 152 4.106 -19.527 308.668 1.00 55.73 ATOM 129 CA PHE C 153 4.288 -17.439 305.473 1.00 56.82 ATOM 130 CA PHE C 154 4.030 -19.169 302.082 1.00 77.49 ATOM 131 CA PHE C 155 7.789 -19.586 301.697 1.00 70.57 ATOM 132 CA ASN C 156 8.104 -20.809 305.319 1.00 68.49 ATOM 133 CA GLN C 157 5.714 -23.719 304.742 1.00 87.81 ATOM 134 CA THR C 158 7.242 -25.318 301.631 1.00 90.37 ATOM 135 CA PRO C 159 10.725 -25.373 300.155 1.00 65.04 ATOM 136 CA GLY C 160 8.877 -25.458 296.822 1.00 84.25 ATOM 137 CA LEU C 161 7.797 -21.864 297.377 1.00 91.42 ATOM 138 CA ALA C 162 11.232 -20.714 298.540 1.00 66.76 ATOM 139 CA LEU C 163 11.451 -16.931 298.024 1.00 76.13 ATOM 140 CA PRO C 164 14.235 -16.309 295.428 1.00 81.51 ATOM 141 CA LEU C 165 16.385 -13.454 296.748 1.00 68.72 ATOM 142 CA ILE C 166 18.661 -13.636 293.717 1.00 66.27 ATOM 143 CA ALA C 167 15.616 -12.872 291.590 1.00 69.61 ATOM 144 CA LEU C 168 14.683 -9.850 293.719 1.00 68.55 ATOM 145 CA GLN C 169 17.900 -7.905 293.203 1.00 78.69 ATOM 146 CA TYR C 170 15.955 -4.620 293.336 1.00 78.95 ATOM 147 CA HIS C 171 13.229 -5.471 295.842 1.00 66.78 ATOM 148 CA GLU C 172 13.979 -5.374 299.567 1.00 68.30 ATOM 149 CA VAL C 173 12.380 -8.086 301.683 1.00 86.55 ATOM 150 CA LYS C 174 11.373 -6.843 305.125 1.00 85.62 ATOM 151 CA LEU C 175 9.562 -8.071 308.222 1.00 94.80 ATOM 152 CA TYR C 176 7.688 -5.864 310.685 1.00 49.61 ATOM 153 CA PHE C 177 7.039 -7.174 314.199 1.00 50.35 ATOM 154 CA THR C 178 4.884 -5.647 316.916 1.00 38.57 ATOM 155 CA LEU C 179 5.535 -7.077 320.366 1.00 72.02 ATOM 156 CA ALA C 180 2.649 -7.493 322.799 1.00 80.33 ATOM 157 CA SER C 181 2.739 -5.055 325.698 1.00 77.19 ATOM 158 CA GLN C 182 1.285 -7.390 328.340 1.00 85.30 ATOM 159 CA VAL C 183 1.984 -11.113 328.393 1.00 83.62 ATOM 160 CA GLN C 184 0.342 -13.151 331.165 1.00 44.54 ATOM 161 CA GLY C 185 2.694 -14.968 333.521 1.00 61.02 ATOM 162 CA VAL C 186 5.673 -12.988 332.260 1.00 95.33 ATOM 163 CA ASN C 187 4.899 -9.274 332.076 1.00 90.83 ATOM 164 CA TYR C 188 1.699 -9.095 334.125 1.00 74.76 ATOM 165 CA ASN C 189 -0.545 -11.327 336.222 1.00 50.75 ATOM 166 CA GLY C 190 -4.014 -10.367 335.105 1.00 40.28 ATOM 167 CA SER C 191 -4.214 -6.577 335.016 1.00 66.75 ATOM 168 CA SER C 192 -1.443 -6.249 337.635 1.00 80.31 ATOM 169 CA ALA C 193 2.091 -5.675 336.403 1.00 75.83 ATOM 170 CA ILE C 194 4.760 -8.008 337.816 1.00 60.47 ATOM 171 CA ALA C 195 7.554 -6.008 339.431 1.00 51.18 ATOM 172 CA GLY C 196 11.111 -6.678 338.294 1.00 57.80 ATOM 173 CA ALA C 197 9.704 -8.278 335.135 1.00 47.94 ATOM 174 CA ALA C 198 12.591 -8.477 332.681 1.00 40.16 ATOM 175 CA GLN C 199 12.227 -7.177 329.137 1.00 52.82 ATOM 176 CA PRO C 200 12.271 -9.684 326.269 1.00 49.26 ATOM 177 CA THR C 201 15.410 -10.578 324.295 1.00 47.33 ATOM 178 CA MET C 202 14.766 -11.132 320.602 1.00 57.66 ATOM 179 CA SER C 203 16.668 -12.756 317.736 1.00 42.69 ATOM 180 CA VAL C 204 15.631 -13.371 314.111 1.00 45.52 ATOM 181 CA TRP C 205 17.026 -16.299 312.117 1.00 60.37 ATOM 182 CA VAL C 206 16.564 -17.044 308.413 1.00 82.52 ATOM 183 CA ASP C 207 17.351 -20.259 306.518 1.00 88.00 ATOM 184 CA TYR C 208 19.131 -19.729 303.191 1.00 74.62 ATOM 185 CA ILE C 209 19.463 -22.120 300.294 1.00 83.89 ATOM 186 CA PHE C 210 22.677 -21.875 298.290 1.00 64.90 ATOM 187 CA LEU C 211 22.121 -23.134 294.768 1.00 72.93 ATOM 188 CA ASP C 212 24.461 -24.523 292.159 1.00 69.66 ATOM 189 CA THR C 213 25.618 -22.473 289.141 1.00 58.79 ATOM 190 CA GLN C 214 23.190 -24.155 286.767 1.00 75.17 ATOM 191 CA GLU C 215 20.018 -23.348 288.693 1.00 74.33 ATOM 192 CA ARG C 216 21.369 -20.007 289.955 1.00 62.03 ATOM 193 CA THR C 217 21.573 -18.708 286.400 1.00 69.49 ATOM 194 CA ARG C 218 18.004 -19.765 285.745 1.00 80.46 ATOM 195 CA PHE C 219 16.640 -18.215 288.940 1.00 67.64 ATOM 196 CA ALA C 220 18.372 -15.001 287.938 1.00 70.73 ATOM 197 CA GLN C 221 17.507 -15.111 284.252 1.00 89.53 TER