HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 C 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 C 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 C 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 C 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 C 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 C 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 C 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 C 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 C 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 C 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 C 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 C 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 C 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 C 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 C 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 C 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 C 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 C 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU C 222 13.906 -16.300 283.898 1.00 89.74 ATOM 2 CA PRO C 223 10.560 -14.827 285.043 1.00 72.70 ATOM 3 CA HIS C 224 8.907 -16.585 287.994 1.00 67.42 ATOM 4 CA GLU C 225 5.302 -17.086 289.042 1.00 74.55 ATOM 5 CA TYR C 226 4.557 -18.487 292.479 1.00 76.20 ATOM 6 CA LEU C 227 1.103 -19.535 293.584 1.00 78.31 ATOM 7 CA ILE C 228 1.132 -18.443 297.226 1.00 79.34 ATOM 8 CA GLU C 229 -1.342 -18.107 300.062 1.00 73.88 ATOM 9 CA GLN C 230 -2.361 -15.158 302.188 1.00 65.24 ATOM 10 CA LEU C 231 -4.277 -14.520 305.363 1.00 87.67 ATOM 11 CA GLN C 232 -7.285 -12.199 305.654 1.00 78.57 ATOM 12 CA PHE C 233 -8.773 -10.860 308.895 1.00 74.22 ATOM 13 CA THR C 234 -11.099 -8.322 310.636 1.00 56.50 ATOM 14 CA GLY C 235 -12.194 -8.022 314.320 1.00 58.93 ATOM 15 CA SER C 236 -15.957 -8.239 315.101 1.00 55.63 ATOM 16 CA GLU C 237 -18.044 -7.991 318.288 1.00 59.52 ATOM 17 CA THR C 238 -20.068 -10.981 319.483 1.00 60.64 ATOM 18 CA ALA C 239 -23.351 -10.584 321.342 1.00 61.71 ATOM 19 CA THR C 240 -24.283 -13.778 323.208 1.00 72.48 ATOM 20 CA PRO C 241 -27.751 -13.972 324.943 1.00 72.78 ATOM 21 CA SER C 242 -27.358 -13.756 328.685 1.00 66.45 ATOM 22 CA ALA C 243 -30.406 -16.011 329.043 1.00 80.66 ATOM 23 CA THR C 244 -34.087 -16.511 328.224 1.00109.76 ATOM 24 CA THR C 245 -32.955 -15.856 324.647 1.00107.76 ATOM 25 CA GLN C 246 -30.642 -17.107 321.905 1.00 84.89 ATOM 26 CA ALA C 247 -29.061 -14.079 320.233 1.00 73.83 ATOM 27 CA SER C 248 -28.133 -14.049 316.548 1.00 64.92 ATOM 28 CA GLN C 249 -26.114 -12.024 314.049 1.00 55.19 ATOM 29 CA ASN C 250 -25.103 -11.715 310.415 1.00 57.38 ATOM 30 CA ILE C 251 -21.478 -10.748 310.007 1.00 76.00 ATOM 31 CA ARG C 252 -21.028 -9.415 306.483 1.00 72.32 ATOM 32 CA LEU C 253 -17.710 -10.969 305.428 1.00 97.34 ATOM 33 CA ASN C 254 -15.328 -8.768 303.431 1.00 80.91 ATOM 34 CA PHE C 255 -12.961 -11.209 301.749 1.00 68.54 ATOM 35 CA ASN C 256 -11.555 -11.611 298.238 1.00 49.95 ATOM 36 CA HIS C 257 -9.678 -13.945 295.878 1.00 56.39 ATOM 37 CA PRO C 258 -9.954 -17.766 295.610 1.00 73.62 ATOM 38 CA THR C 259 -10.412 -18.853 299.252 1.00 56.10 ATOM 39 CA LYS C 260 -9.500 -22.321 300.620 1.00 79.44 ATOM 40 CA TYR C 261 -11.357 -21.994 303.888 1.00 67.53 ATOM 41 CA LEU C 262 -12.717 -19.810 306.671 1.00 55.37 ATOM 42 CA ALA C 263 -11.664 -20.134 310.311 1.00 62.56 ATOM 43 CA TRP C 264 -13.203 -18.265 313.200 1.00 52.05 ATOM 44 CA ASN C 265 -13.382 -18.081 316.987 1.00 58.02 ATOM 45 CA PHE C 266 -15.173 -16.122 319.718 1.00 47.52 ATOM 46 CA ASN C 267 -12.611 -14.904 322.231 1.00 68.78 ATOM 47 CA ASN C 268 -12.585 -13.088 325.578 1.00 81.65 ATOM 48 CA PRO C 269 -10.221 -10.149 324.881 1.00 90.50 ATOM 49 CA THR C 270 -9.074 -10.157 328.521 1.00 71.95 ATOM 50 CA ASN C 271 -7.560 -13.639 328.201 1.00 88.72 ATOM 51 CA TYR C 272 -5.286 -14.539 325.281 1.00 88.24 ATOM 52 CA GLY C 273 -6.450 -17.834 323.785 1.00 95.10 ATOM 53 CA GLN C 274 -9.719 -18.041 325.713 1.00 90.33 ATOM 54 CA TYR C 275 -12.216 -19.249 323.138 1.00 69.84 ATOM 55 CA THR C 276 -14.385 -21.016 325.708 1.00 64.81 ATOM 56 CA ALA C 277 -16.489 -19.984 328.744 1.00 73.92 ATOM 57 CA LEU C 278 -14.826 -20.222 332.159 1.00 70.61 ATOM 58 CA ALA C 279 -16.465 -22.719 334.502 1.00 60.67 ATOM 59 CA ASN C 280 -16.070 -24.356 337.886 1.00 69.72 ATOM 60 CA ILE C 281 -14.757 -27.500 336.219 1.00 68.14 ATOM 61 CA PRO C 282 -11.206 -28.884 336.550 1.00 62.28 ATOM 62 CA GLY C 283 -9.054 -26.967 334.088 1.00 45.98 ATOM 63 CA ALA C 284 -11.872 -24.578 333.218 1.00 45.56 ATOM 64 CA CYS C 285 -11.018 -21.826 335.735 1.00 42.57 ATOM 65 CA SER C 286 -8.538 -20.736 338.389 1.00 42.46 ATOM 66 CA GLY C 287 -8.805 -23.002 341.435 1.00 55.14 ATOM 67 CA ALA C 288 -11.554 -25.014 339.744 1.00 63.02 ATOM 68 CA GLY C 289 -12.881 -27.922 341.774 1.00 87.78 ATOM 69 CA THR C 290 -11.913 -26.340 345.062 1.00 95.24 ATOM 70 CA ALA C 291 -12.813 -23.672 347.634 1.00 98.16 ATOM 71 CA ALA C 292 -10.545 -21.213 345.817 1.00 69.81 ATOM 72 CA ALA C 293 -12.465 -21.709 342.563 1.00 65.78 ATOM 73 CA THR C 294 -13.046 -18.457 340.651 1.00 72.65 ATOM 74 CA VAL C 295 -15.005 -18.340 337.386 1.00 81.96 ATOM 75 CA THR C 296 -13.498 -14.867 336.942 1.00 96.73 ATOM 76 CA THR C 297 -10.003 -16.142 336.131 1.00 67.23 ATOM 77 CA PRO C 298 -8.953 -18.882 333.694 1.00 50.11 ATOM 78 CA ASP C 299 -6.607 -21.763 334.532 1.00 49.62 ATOM 79 CA TYR C 300 -3.976 -20.112 332.317 1.00 60.24 ATOM 80 CA GLY C 301 -1.918 -23.231 331.769 1.00 64.89 ATOM 81 CA ASN C 302 -5.079 -24.966 330.599 1.00 62.03 ATOM 82 CA THR C 303 -6.992 -22.224 328.774 1.00 77.12 ATOM 83 CA GLY C 304 -8.146 -24.629 326.062 1.00 83.29 ATOM 84 CA THR C 305 -10.856 -27.329 326.208 1.00 82.63 ATOM 85 CA TYR C 306 -12.474 -30.007 324.073 1.00 83.31 ATOM 86 CA ASN C 307 -15.752 -29.646 325.968 1.00 67.51 ATOM 87 CA GLU C 308 -18.351 -28.267 323.527 1.00 49.56 ATOM 88 CA GLN C 309 -20.598 -27.542 326.515 1.00 64.35 ATOM 89 CA LEU C 310 -18.389 -24.495 327.057 1.00 62.97 ATOM 90 CA ALA C 311 -18.500 -23.091 323.489 1.00 61.42 ATOM 91 CA VAL C 312 -21.111 -20.412 322.599 1.00 67.92 ATOM 92 CA LEU C 313 -21.975 -20.943 318.952 1.00 76.15 ATOM 93 CA ASP C 314 -25.220 -22.931 318.681 1.00 68.09 ATOM 94 CA SER C 315 -25.607 -23.008 314.901 1.00 72.09 ATOM 95 CA ALA C 316 -24.214 -21.293 311.825 1.00 85.34 ATOM 96 CA LYS C 317 -24.393 -20.987 308.057 1.00 93.20 ATOM 97 CA ILE C 318 -22.852 -18.893 305.305 1.00110.45 ATOM 98 CA GLN C 319 -24.823 -17.054 302.635 1.00 67.35 ATOM 99 CA LEU C 320 -23.857 -15.973 299.128 1.00 54.60 ATOM 100 CA ASN C 321 -25.866 -13.055 297.821 1.00 42.97 ATOM 101 CA GLY C 322 -28.675 -13.835 300.265 1.00 62.17 ATOM 102 CA GLN C 323 -28.635 -17.437 299.092 1.00 67.06 ATOM 103 CA ASP C 324 -27.741 -20.197 301.569 1.00 72.47 ATOM 104 CA ARG C 325 -24.337 -21.711 300.755 1.00 91.12 ATOM 105 CA PHE C 326 -25.436 -24.627 302.897 1.00 85.75 ATOM 106 CA ALA C 327 -28.067 -25.587 305.458 1.00 72.95 ATOM 107 CA THR C 328 -27.562 -24.623 309.106 1.00 76.43 ATOM 108 CA ARG C 329 -25.358 -26.874 311.206 1.00 72.02 ATOM 109 CA LYS C 330 -24.612 -26.776 314.940 1.00 79.76 ATOM 110 CA GLY C 331 -21.377 -25.248 316.182 1.00 77.02 ATOM 111 CA SER C 332 -20.040 -28.722 316.998 1.00 46.11 ATOM 112 CA TYR C 333 -20.145 -29.568 313.269 1.00 43.01 ATOM 113 CA PHE C 334 -17.620 -26.887 312.301 1.00 57.34 ATOM 114 CA ASN C 335 -15.474 -27.820 315.329 1.00 57.24 ATOM 115 CA LYS C 336 -15.517 -31.620 315.029 1.00 44.68 ATOM 116 CA VAL C 337 -16.776 -32.713 311.564 1.00 45.76 ATOM 117 CA GLN C 338 -15.296 -30.136 309.175 1.00 30.29 ATOM 118 CA PRO C 339 -11.832 -30.759 310.715 1.00 41.85 ATOM 119 CA TYR C 340 -12.260 -34.559 310.887 1.00 53.61 ATOM 120 CA GLN C 341 -13.190 -34.602 307.188 1.00 61.96 ATOM 121 CA SER C 342 -10.452 -32.282 305.907 1.00 69.86 ATOM 122 CA ILE C 343 -7.689 -32.129 308.527 1.00 74.19 ATOM 123 CA GLY C 344 -7.647 -35.313 310.580 1.00 76.95 ATOM 124 CA GLY C 345 -6.521 -33.971 313.941 1.00 68.29 ATOM 125 CA VAL C 346 -8.519 -32.626 316.879 1.00 77.58 ATOM 126 CA THR C 347 -9.557 -29.018 317.420 1.00 66.62 ATOM 127 CA PRO C 348 -10.385 -27.599 320.871 1.00 82.41 ATOM 128 CA ALA C 349 -13.908 -26.294 321.391 1.00 68.99 ATOM 129 CA GLY C 350 -14.275 -22.658 320.360 1.00 74.00 ATOM 130 CA VAL C 351 -12.498 -22.953 317.022 1.00 77.64 ATOM 131 CA TYR C 352 -14.553 -23.405 313.865 1.00 77.87 ATOM 132 CA LEU C 353 -13.680 -24.249 310.308 1.00 61.32 ATOM 133 CA TYR C 354 -15.508 -24.422 307.016 1.00 63.00 ATOM 134 CA SER C 355 -13.429 -25.621 304.111 1.00 67.74 ATOM 135 CA PHE C 356 -13.947 -24.956 300.415 1.00 86.75 ATOM 136 CA ALA C 357 -11.085 -27.397 299.768 1.00 90.83 ATOM 137 CA LEU C 358 -10.657 -31.159 299.991 1.00 79.54 ATOM 138 CA LYS C 359 -7.317 -30.735 301.803 1.00 75.63 ATOM 139 CA PRO C 360 -7.099 -27.258 303.435 1.00 73.70 ATOM 140 CA ALA C 361 -3.787 -28.091 305.078 1.00 72.53 ATOM 141 CA GLY C 362 -2.264 -28.961 301.711 1.00 55.78 ATOM 142 CA ARG C 363 -0.265 -26.438 299.687 1.00 63.72 ATOM 143 CA GLN C 364 -1.527 -27.728 296.339 1.00 69.22 ATOM 144 CA PRO C 365 -5.015 -26.316 295.540 1.00 85.34 ATOM 145 CA SER C 366 -7.939 -28.713 295.944 1.00 71.92 ATOM 146 CA GLY C 367 -11.079 -26.652 296.220 1.00 90.41 ATOM 147 CA THR C 368 -11.542 -22.901 296.292 1.00 87.44 ATOM 148 CA CYS C 369 -14.187 -20.171 296.358 1.00 76.10 ATOM 149 CA ASN C 370 -13.673 -16.791 294.705 1.00 79.00 ATOM 150 CA PHE C 371 -14.775 -14.014 297.052 1.00 71.38 ATOM 151 CA SER C 372 -13.709 -11.434 294.481 1.00 56.66 ATOM 152 CA ARG C 373 -16.886 -12.491 292.735 1.00 67.88 ATOM 153 CA ILE C 374 -19.337 -12.672 295.639 1.00 57.24 ATOM 154 CA ASP C 375 -20.934 -9.267 296.068 1.00 35.12 ATOM 155 CA ASN C 376 -22.347 -10.316 299.422 1.00 33.78 ATOM 156 CA ALA C 377 -20.822 -12.898 301.756 1.00 73.61 ATOM 157 CA THR C 378 -22.401 -13.194 305.209 1.00 77.92 ATOM 158 CA LEU C 379 -21.966 -15.428 308.249 1.00 99.37 ATOM 159 CA SER C 380 -25.272 -16.046 310.025 1.00 59.86 ATOM 160 CA LEU C 381 -24.657 -16.849 313.700 1.00 65.89 ATOM 161 CA THR C 382 -27.019 -17.995 316.424 1.00 57.63 ATOM 162 CA TYR C 383 -25.699 -18.342 319.950 1.00 60.02 ATOM 163 CA LYS C 384 -26.716 -20.702 322.743 1.00 63.52 ATOM 164 CA THR C 385 -28.600 -19.323 325.731 1.00 62.52 ATOM 165 CA CYS C 386 -25.946 -18.788 328.396 1.00 39.62 ATOM 166 CA SER C 387 -28.109 -19.857 331.326 1.00 61.42 ATOM 167 CA ILE C 388 -25.941 -22.503 333.014 1.00 68.50 ATOM 168 CA ASP C 389 -24.522 -21.519 336.395 1.00 68.70 ATOM 169 CA ALA C 390 -20.778 -21.454 335.684 1.00 54.58 ATOM 170 CA THR C 391 -19.831 -22.019 339.345 1.00 76.14 ATOM 171 CA SER C 392 -21.746 -25.305 339.549 1.00 76.91 ATOM 172 CA PRO C 393 -20.007 -28.551 338.422 1.00 64.54 ATOM 173 CA ALA C 394 -23.272 -30.525 338.478 1.00 53.20 ATOM 174 CA ALA C 395 -24.931 -28.012 336.163 1.00 71.54 ATOM 175 CA VAL C 396 -22.084 -27.668 333.635 1.00 52.11 ATOM 176 CA LEU C 397 -21.421 -31.434 333.405 1.00 51.32 ATOM 177 CA GLY C 398 -25.083 -32.430 333.128 1.00 55.45 ATOM 178 CA ASN C 399 -26.735 -30.093 330.636 1.00 85.72 ATOM 179 CA THR C 400 -28.448 -29.590 327.262 1.00117.83 ATOM 180 CA GLU C 401 -26.983 -28.959 323.783 1.00125.30 ATOM 181 CA THR C 402 -28.407 -25.458 323.361 1.00112.98 ATOM 182 CA VAL C 403 -27.057 -23.774 326.499 1.00 86.11 ATOM 183 CA THR C 404 -23.675 -22.752 327.946 1.00 58.66 ATOM 184 CA ALA C 405 -22.494 -21.107 331.157 1.00 43.52 ATOM 185 CA ASN C 406 -23.386 -17.421 331.715 1.00 40.71 ATOM 186 CA THR C 407 -19.652 -16.884 331.662 1.00 74.23 ATOM 187 CA ALA C 408 -20.062 -17.075 327.869 1.00 78.20 ATOM 188 CA THR C 409 -21.049 -13.387 327.766 1.00 69.71 ATOM 189 CA LEU C 410 -17.384 -12.372 327.893 1.00 84.47 ATOM 190 CA LEU C 411 -16.589 -14.061 324.568 1.00 65.60 ATOM 191 CA THR C 412 -17.244 -10.916 322.510 1.00 53.07 ATOM 192 CA ALA C 413 -14.316 -10.798 320.099 1.00 61.72 ATOM 193 CA LEU C 414 -15.338 -12.569 316.881 1.00 46.83 ATOM 194 CA ASN C 415 -12.237 -13.308 314.818 1.00 55.95 ATOM 195 CA ILE C 416 -12.862 -14.530 311.287 1.00 44.20 ATOM 196 CA TYR C 417 -9.990 -15.667 309.084 1.00 75.11 ATOM 197 CA ALA C 418 -9.830 -16.568 305.408 1.00 55.74 ATOM 198 CA LYS C 419 -6.812 -18.131 303.725 1.00 72.29 ATOM 199 CA ASN C 420 -6.551 -17.412 300.028 1.00 65.29 ATOM 200 CA TYR C 421 -4.384 -18.022 296.993 1.00 82.40 ATOM 201 CA ASN C 422 -2.627 -15.350 294.953 1.00 66.09 ATOM 202 CA VAL C 423 0.195 -15.198 292.441 1.00 56.02 ATOM 203 CA LEU C 424 3.620 -13.686 293.074 1.00 38.92 ATOM 204 CA ARG C 425 5.356 -12.857 289.772 1.00 47.60 ATOM 205 CA ILE C 426 9.102 -12.177 289.859 1.00 42.39 ATOM 206 CA MET C 427 11.110 -10.775 286.976 1.00 50.05 ATOM 207 CA SER C 428 13.761 -8.211 286.094 1.00 68.20 ATOM 208 CA GLY C 429 14.923 -7.981 289.689 1.00 64.45 ATOM 209 CA MET C 430 11.581 -7.309 291.325 1.00 47.61 ATOM 210 CA GLY C 431 8.325 -8.953 292.352 1.00 40.58 ATOM 211 CA GLY C 432 4.673 -8.167 292.895 1.00 43.74 ATOM 212 CA LEU C 433 1.326 -9.785 293.534 1.00 35.92 ATOM 213 CA ALA C 434 -0.789 -10.521 290.471 1.00 53.29 ATOM 214 CA TYR C 435 -4.019 -9.641 292.263 1.00 63.54 ATOM 215 CA ALA C 436 -4.969 -6.926 294.725 1.00 91.33 ATOM 216 CA ASN C 437 -7.950 -6.720 297.114 1.00 89.94 TER