HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 D 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 D 197 THR PHE PHE LYS THR VAL TYR ARG ARG TYR THR ASN PHE SEQRES 2 D 197 ALA ILE GLU SER ILE GLN GLN THR ILE ASN GLY SER VAL SEQRES 3 D 197 GLY PHE GLY ASN LYS VAL SER THR GLN ILE SER ARG ASN SEQRES 4 D 197 GLY ASP LEU ILE THR ASP ILE VAL VAL GLU PHE VAL LEU SEQRES 5 D 197 THR LYS GLY GLY ASN GLY GLY THR THR TYR TYR PRO ALA SEQRES 6 D 197 GLU GLU LEU LEU GLN ASP VAL GLU LEU GLU ILE GLY GLY SEQRES 7 D 197 GLN ARG ILE ASP LYS HIS TYR ASN ASP TRP PHE ARG THR SEQRES 8 D 197 TYR ASP ALA LEU PHE ARG MET ASN ASP ASP ARG TYR ASN SEQRES 9 D 197 TYR ARG ARG MET THR ASP TRP VAL ASN ASN GLU LEU VAL SEQRES 10 D 197 GLY ALA GLN LYS ARG PHE TYR VAL PRO LEU ILE PHE PHE SEQRES 11 D 197 PHE ASN GLN THR PRO GLY LEU ALA LEU PRO LEU ILE ALA SEQRES 12 D 197 LEU GLN TYR HIS GLU VAL LYS LEU TYR PHE THR LEU ALA SEQRES 13 D 197 SER GLN VAL GLN GLY VAL ASN TYR ASN GLY SER SER ALA SEQRES 14 D 197 ILE ALA GLY ALA ALA GLN PRO THR MET SER VAL TRP VAL SEQRES 15 D 197 ASP TYR ILE PHE LEU ASP THR GLN GLU ARG THR ARG PHE SEQRES 16 D 197 ALA GLN ATOM 1 CA THR D 25 14.336 -29.596 292.280 1.00 57.11 ATOM 2 CA PHE D 26 12.740 -29.065 295.700 1.00 55.47 ATOM 3 CA PHE D 27 12.539 -25.307 295.302 1.00 61.95 ATOM 4 CA LYS D 28 10.133 -24.737 292.422 1.00 76.61 ATOM 5 CA THR D 29 7.023 -26.844 292.812 1.00 93.88 ATOM 6 CA VAL D 30 4.564 -26.679 289.911 1.00 87.96 ATOM 7 CA TYR D 31 1.137 -27.394 291.421 1.00 97.43 ATOM 8 CA ARG D 32 -1.481 -29.037 289.245 1.00 97.66 ATOM 9 CA ARG D 33 -4.670 -27.530 287.862 1.00 71.72 ATOM 10 CA TYR D 34 -7.890 -29.356 288.665 1.00 62.54 ATOM 11 CA THR D 35 -11.521 -29.594 287.622 1.00 59.76 ATOM 12 CA ASN D 36 -13.754 -26.800 288.952 1.00 68.90 ATOM 13 CA PHE D 37 -16.221 -28.001 291.574 1.00 64.65 ATOM 14 CA ALA D 38 -18.240 -27.119 294.668 1.00 71.59 ATOM 15 CA ILE D 39 -19.300 -29.071 297.739 1.00 89.61 ATOM 16 CA GLU D 40 -22.402 -28.955 299.891 1.00 83.88 ATOM 17 CA SER D 41 -23.723 -31.090 302.737 1.00 79.46 ATOM 18 CA ILE D 42 -27.454 -31.624 302.335 1.00 45.60 ATOM 19 CA GLN D 43 -29.748 -33.312 304.846 1.00 36.02 ATOM 20 CA GLN D 44 -31.459 -36.553 303.896 1.00 53.48 ATOM 21 CA THR D 45 -35.057 -37.599 304.439 1.00 50.96 ATOM 22 CA ILE D 46 -35.090 -40.390 306.986 1.00 40.75 ATOM 23 CA ASN D 47 -37.775 -43.000 306.274 1.00 45.50 ATOM 24 CA GLY D 48 -39.505 -44.803 309.126 1.00 38.04 ATOM 25 CA SER D 49 -39.784 -44.138 312.834 1.00 41.95 ATOM 26 CA VAL D 50 -36.498 -43.382 314.607 1.00 54.82 ATOM 27 CA GLY D 51 -36.055 -45.245 317.876 1.00 72.05 ATOM 28 CA PHE D 52 -34.140 -47.980 319.691 1.00 94.85 ATOM 29 CA GLY D 53 -34.621 -51.269 317.862 1.00 69.81 ATOM 30 CA ASN D 54 -36.121 -49.715 314.766 1.00 53.53 ATOM 31 CA LYS D 55 -35.047 -50.165 311.157 1.00 36.80 ATOM 32 CA VAL D 56 -34.929 -46.969 309.127 1.00 30.47 ATOM 33 CA SER D 57 -33.829 -46.158 305.580 1.00 47.58 ATOM 34 CA THR D 58 -33.029 -43.322 303.190 1.00 65.96 ATOM 35 CA GLN D 59 -32.956 -42.904 299.422 1.00 68.34 ATOM 36 CA ILE D 60 -30.210 -40.407 298.607 1.00 97.82 ATOM 37 CA SER D 61 -31.777 -37.411 296.875 1.00 78.94 ATOM 38 CA ARG D 62 -30.338 -36.267 293.555 1.00 70.87 ATOM 39 CA ASN D 63 -29.218 -32.780 294.539 1.00 59.72 ATOM 40 CA GLY D 64 -25.604 -32.989 293.498 1.00 54.56 ATOM 41 CA ASP D 65 -23.641 -34.731 290.785 1.00 71.95 ATOM 42 CA LEU D 66 -21.437 -36.869 293.037 1.00 68.92 ATOM 43 CA ILE D 67 -21.586 -37.907 296.677 1.00 62.35 ATOM 44 CA THR D 68 -18.731 -38.479 299.084 1.00 66.17 ATOM 45 CA ASP D 69 -19.037 -38.104 302.858 1.00 81.55 ATOM 46 CA ILE D 70 -22.148 -39.176 304.770 1.00 80.88 ATOM 47 CA VAL D 71 -22.593 -38.350 308.456 1.00 75.82 ATOM 48 CA VAL D 72 -25.282 -39.674 310.749 1.00 56.01 ATOM 49 CA GLU D 73 -26.193 -37.255 313.548 1.00 41.98 ATOM 50 CA PHE D 74 -27.590 -38.455 316.856 1.00 45.18 ATOM 51 CA VAL D 75 -28.677 -36.602 319.978 1.00 55.85 ATOM 52 CA LEU D 76 -28.610 -38.684 323.147 1.00 46.83 ATOM 53 CA THR D 77 -28.820 -38.066 326.900 1.00 52.36 ATOM 54 CA LYS D 78 -26.629 -39.825 329.504 1.00 83.22 ATOM 55 CA GLY D 79 -28.343 -42.068 332.034 1.00 86.22 ATOM 56 CA GLY D 80 -25.300 -42.407 334.258 1.00 90.57 ATOM 57 CA ASN D 81 -22.274 -40.488 335.496 1.00 71.11 ATOM 58 CA GLY D 82 -18.605 -40.621 334.495 1.00 63.81 ATOM 59 CA GLY D 83 -17.121 -43.599 332.685 1.00 52.30 ATOM 60 CA THR D 84 -20.568 -45.093 332.177 1.00 52.75 ATOM 61 CA THR D 85 -20.550 -44.749 328.402 1.00 55.46 ATOM 62 CA TYR D 86 -18.442 -46.287 325.617 1.00 55.29 ATOM 63 CA TYR D 87 -18.927 -45.135 322.026 1.00 64.30 ATOM 64 CA PRO D 88 -22.762 -44.945 322.348 1.00 73.01 ATOM 65 CA ALA D 89 -23.312 -43.262 318.968 1.00 71.56 ATOM 66 CA GLU D 90 -21.150 -45.897 317.321 1.00 75.11 ATOM 67 CA GLU D 91 -23.062 -48.746 318.990 1.00 64.09 ATOM 68 CA LEU D 92 -26.454 -47.188 318.156 1.00 95.74 ATOM 69 CA LEU D 93 -25.632 -47.720 314.468 1.00 86.46 ATOM 70 CA GLN D 94 -25.870 -51.513 314.683 1.00 59.09 ATOM 71 CA ASP D 95 -25.461 -51.795 310.892 1.00 68.57 ATOM 72 CA VAL D 96 -25.629 -49.813 307.651 1.00 82.78 ATOM 73 CA GLU D 97 -26.331 -51.256 304.208 1.00 69.14 ATOM 74 CA LEU D 98 -25.534 -49.496 300.931 1.00 84.29 ATOM 75 CA GLU D 99 -27.824 -50.490 298.074 1.00 71.67 ATOM 76 CA ILE D 100 -27.717 -49.327 294.438 1.00 82.02 ATOM 77 CA GLY D 101 -30.496 -50.192 291.988 1.00 66.09 ATOM 78 CA GLY D 102 -31.862 -52.698 294.475 1.00 57.77 ATOM 79 CA GLN D 103 -28.478 -54.445 294.601 1.00 66.63 ATOM 80 CA ARG D 104 -26.452 -54.459 297.795 1.00 78.83 ATOM 81 CA ILE D 105 -22.936 -53.014 297.425 1.00 66.14 ATOM 82 CA ASP D 106 -21.709 -53.232 301.017 1.00 64.19 ATOM 83 CA LYS D 107 -22.886 -53.471 304.627 1.00 85.37 ATOM 84 CA HIS D 108 -21.165 -52.456 307.870 1.00106.89 ATOM 85 CA TYR D 109 -21.750 -53.370 311.498 1.00 87.59 ATOM 86 CA ASN D 110 -21.287 -52.121 315.037 1.00 60.52 ATOM 87 CA ASP D 111 -18.286 -54.256 315.773 1.00 65.32 ATOM 88 CA TRP D 112 -16.713 -53.355 312.415 1.00 86.51 ATOM 89 CA PHE D 113 -16.658 -49.642 313.204 1.00 85.32 ATOM 90 CA ARG D 114 -15.129 -50.566 316.575 1.00 74.79 ATOM 91 CA THR D 115 -12.554 -52.862 314.942 1.00 67.96 ATOM 92 CA TYR D 116 -11.842 -50.301 312.239 1.00 69.71 ATOM 93 CA ASP D 117 -11.207 -47.608 314.826 1.00 66.92 ATOM 94 CA ALA D 118 -8.931 -49.891 316.854 1.00 54.74 ATOM 95 CA LEU D 119 -6.921 -50.804 313.775 1.00 30.11 ATOM 96 CA PHE D 120 -7.032 -47.938 311.246 1.00 40.81 ATOM 97 CA ARG D 121 -7.690 -44.720 313.140 1.00 63.46 ATOM 98 CA MET D 122 -4.939 -43.175 315.267 1.00 74.31 ATOM 99 CA ASN D 123 -3.623 -40.286 317.293 1.00 89.48 ATOM 100 CA ASP D 124 -5.706 -37.063 317.496 1.00 90.35 ATOM 101 CA ASP D 125 -7.938 -38.242 314.661 1.00 68.65 ATOM 102 CA ARG D 126 -8.930 -41.246 316.748 1.00 78.03 ATOM 103 CA TYR D 127 -9.537 -39.014 319.752 1.00 82.57 ATOM 104 CA ASN D 128 -11.626 -36.620 317.661 1.00 63.18 ATOM 105 CA TYR D 129 -13.642 -39.649 316.524 1.00 56.13 ATOM 106 CA ARG D 130 -14.447 -40.508 320.136 1.00 67.16 ATOM 107 CA ARG D 131 -15.534 -36.920 320.781 1.00 57.04 ATOM 108 CA MET D 132 -17.935 -37.378 317.860 1.00 49.80 ATOM 109 CA THR D 133 -19.021 -40.779 319.147 1.00 63.88 ATOM 110 CA ASP D 134 -19.495 -40.206 322.894 1.00 69.18 ATOM 111 CA TRP D 135 -19.096 -38.244 326.091 1.00 76.60 ATOM 112 CA VAL D 136 -15.428 -37.580 326.806 1.00 73.95 ATOM 113 CA ASN D 137 -15.591 -34.889 329.516 1.00 82.32 ATOM 114 CA ASN D 138 -16.891 -36.824 332.538 1.00 72.21 ATOM 115 CA GLU D 139 -20.494 -35.817 331.965 1.00 70.60 ATOM 116 CA LEU D 140 -23.131 -36.779 334.527 1.00 69.54 ATOM 117 CA VAL D 141 -26.702 -38.044 334.304 1.00 80.29 ATOM 118 CA GLY D 142 -28.928 -35.916 332.093 1.00 55.69 ATOM 119 CA ALA D 143 -26.130 -34.559 329.890 1.00 61.26 ATOM 120 CA GLN D 144 -27.352 -34.234 326.268 1.00 71.69 ATOM 121 CA LYS D 145 -24.874 -34.336 323.374 1.00 81.77 ATOM 122 CA ARG D 146 -24.759 -34.121 319.567 1.00 79.08 ATOM 123 CA PHE D 147 -23.078 -37.151 317.992 1.00 57.44 ATOM 124 CA TYR D 148 -21.677 -37.527 314.487 1.00 56.13 ATOM 125 CA VAL D 149 -20.979 -40.998 313.143 1.00 70.19 ATOM 126 CA PRO D 150 -19.056 -40.893 309.825 1.00 74.78 ATOM 127 CA LEU D 151 -19.705 -43.797 307.435 1.00 66.47 ATOM 128 CA ILE D 152 -16.769 -45.648 305.878 1.00 60.42 ATOM 129 CA PHE D 153 -17.988 -46.990 302.514 1.00 57.11 ATOM 130 CA PHE D 154 -15.680 -46.823 299.480 1.00 66.92 ATOM 131 CA PHE D 155 -17.003 -43.458 298.310 1.00 68.96 ATOM 132 CA ASN D 156 -16.848 -42.067 301.878 1.00 53.86 ATOM 133 CA GLN D 157 -13.108 -42.735 302.180 1.00 70.50 ATOM 134 CA THR D 158 -11.807 -41.070 299.000 1.00 87.57 ATOM 135 CA PRO D 159 -13.086 -38.275 296.795 1.00 85.02 ATOM 136 CA GLY D 160 -11.460 -40.281 293.991 1.00 96.70 ATOM 137 CA LEU D 161 -14.156 -42.923 294.373 1.00 87.54 ATOM 138 CA ALA D 162 -16.991 -40.399 294.602 1.00 73.83 ATOM 139 CA LEU D 163 -20.237 -42.173 293.636 1.00 72.82 ATOM 140 CA PRO D 164 -21.539 -40.474 290.427 1.00 74.44 ATOM 141 CA LEU D 165 -25.271 -39.877 290.908 1.00 76.75 ATOM 142 CA ILE D 166 -25.556 -38.270 287.480 1.00 69.32 ATOM 143 CA ALA D 167 -24.346 -41.557 286.023 1.00 53.63 ATOM 144 CA LEU D 168 -26.945 -43.562 287.959 1.00 55.07 ATOM 145 CA GLN D 169 -30.018 -41.860 286.521 1.00 62.98 ATOM 146 CA TYR D 170 -31.955 -45.146 286.728 1.00 65.09 ATOM 147 CA HIS D 171 -30.466 -46.692 289.860 1.00 62.57 ATOM 148 CA GLU D 172 -31.667 -45.573 293.287 1.00 56.55 ATOM 149 CA VAL D 173 -29.029 -45.286 295.992 1.00 92.00 ATOM 150 CA LYS D 174 -30.335 -46.280 299.416 1.00 73.87 ATOM 151 CA LEU D 175 -29.073 -46.778 302.955 1.00 82.72 ATOM 152 CA TYR D 176 -30.601 -49.129 305.516 1.00 48.55 ATOM 153 CA PHE D 177 -29.895 -48.533 309.210 1.00 45.96 ATOM 154 CA THR D 178 -30.760 -50.756 312.154 1.00 40.00 ATOM 155 CA LEU D 179 -30.548 -48.996 315.507 1.00 79.70 ATOM 156 CA ALA D 180 -29.344 -50.912 318.557 1.00 79.82 ATOM 157 CA SER D 181 -32.078 -51.642 321.078 1.00 71.29 ATOM 158 CA GLN D 182 -29.939 -51.342 324.217 1.00 67.93 ATOM 159 CA VAL D 183 -27.077 -48.879 324.524 1.00 73.39 ATOM 160 CA GLN D 184 -25.133 -48.867 327.801 1.00 42.28 ATOM 161 CA GLY D 185 -25.159 -45.621 329.752 1.00 66.92 ATOM 162 CA VAL D 186 -27.993 -44.241 327.644 1.00 85.32 ATOM 163 CA ASN D 187 -30.782 -46.787 327.231 1.00 75.69 ATOM 164 CA TYR D 188 -29.865 -49.320 329.915 1.00 61.01 ATOM 165 CA ASN D 189 -27.328 -49.825 332.697 1.00 53.63 ATOM 166 CA GLY D 190 -26.298 -53.426 332.287 1.00 35.33 ATOM 167 CA SER D 191 -29.442 -55.505 331.828 1.00 61.67 ATOM 168 CA SER D 192 -31.560 -52.931 333.705 1.00 85.95 ATOM 169 CA ALA D 193 -33.456 -50.371 331.654 1.00 73.34 ATOM 170 CA ILE D 194 -32.993 -46.726 332.678 1.00 52.00 ATOM 171 CA ALA D 195 -36.353 -45.111 333.395 1.00 38.51 ATOM 172 CA GLY D 196 -37.208 -41.897 331.567 1.00 55.44 ATOM 173 CA ALA D 197 -34.522 -42.744 329.002 1.00 46.59 ATOM 174 CA ALA D 198 -35.195 -40.525 326.000 1.00 51.44 ATOM 175 CA GLN D 199 -35.409 -41.987 322.506 1.00 52.46 ATOM 176 CA PRO D 200 -32.684 -41.104 319.995 1.00 62.61 ATOM 177 CA THR D 201 -32.979 -38.253 317.481 1.00 57.84 ATOM 178 CA MET D 202 -31.437 -39.046 314.111 1.00 60.42 ATOM 179 CA SER D 203 -30.339 -37.016 311.088 1.00 45.52 ATOM 180 CA VAL D 204 -28.577 -38.109 307.876 1.00 55.71 ATOM 181 CA TRP D 205 -26.305 -35.734 305.955 1.00 62.65 ATOM 182 CA VAL D 206 -24.682 -36.282 302.556 1.00 83.61 ATOM 183 CA ASP D 207 -21.899 -34.269 300.900 1.00 94.02 ATOM 184 CA TYR D 208 -22.499 -33.484 297.219 1.00 67.80 ATOM 185 CA ILE D 209 -20.003 -32.413 294.603 1.00 69.30 ATOM 186 CA PHE D 210 -21.304 -30.074 291.916 1.00 65.82 ATOM 187 CA LEU D 211 -19.233 -30.419 288.767 1.00 73.96 ATOM 188 CA ASP D 212 -18.597 -28.093 285.871 1.00 71.18 ATOM 189 CA THR D 213 -20.276 -28.557 282.463 1.00 70.03 ATOM 190 CA GLN D 214 -17.206 -30.126 280.894 1.00 89.77 ATOM 191 CA GLU D 215 -16.809 -32.968 283.382 1.00 82.81 ATOM 192 CA ARG D 216 -20.574 -33.305 283.932 1.00 80.78 ATOM 193 CA THR D 217 -21.049 -34.283 280.305 1.00 85.06 ATOM 194 CA ARG D 218 -18.336 -36.893 280.587 1.00 80.77 ATOM 195 CA PHE D 219 -19.690 -38.383 283.818 1.00 71.19 ATOM 196 CA ALA D 220 -23.053 -38.654 282.102 1.00 66.09 ATOM 197 CA GLN D 221 -21.791 -39.857 278.741 1.00 71.89 TER