HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 D 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 D 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 D 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 D 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 D 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 D 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 D 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 D 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 D 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 D 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 D 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 D 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 D 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 D 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 D 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 D 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 D 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 D 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU D 222 -19.011 -42.391 279.338 1.00 78.70 ATOM 2 CA PRO D 223 -18.949 -45.822 281.036 1.00 73.37 ATOM 3 CA HIS D 224 -17.271 -45.940 284.459 1.00 70.47 ATOM 4 CA GLU D 225 -15.370 -48.623 286.341 1.00 68.07 ATOM 5 CA TYR D 226 -14.529 -48.075 289.988 1.00 59.31 ATOM 6 CA LEU D 227 -12.237 -50.343 291.951 1.00 67.75 ATOM 7 CA ILE D 228 -13.944 -50.352 295.349 1.00 70.39 ATOM 8 CA GLU D 229 -13.658 -52.229 298.615 1.00 71.09 ATOM 9 CA GLN D 230 -16.155 -54.275 300.574 1.00 55.64 ATOM 10 CA LEU D 231 -16.461 -55.783 304.012 1.00 79.17 ATOM 11 CA GLN D 232 -17.106 -59.471 304.712 1.00 72.46 ATOM 12 CA PHE D 233 -18.229 -60.955 308.037 1.00 64.77 ATOM 13 CA THR D 234 -19.680 -63.965 309.966 1.00 47.70 ATOM 14 CA GLY D 235 -20.184 -64.528 313.745 1.00 50.28 ATOM 15 CA SER D 236 -18.399 -67.526 315.369 1.00 40.48 ATOM 16 CA GLU D 237 -18.294 -68.983 318.899 1.00 45.62 ATOM 17 CA THR D 238 -15.024 -69.046 320.838 1.00 51.15 ATOM 18 CA ALA D 239 -14.211 -71.789 323.334 1.00 60.45 ATOM 19 CA THR D 240 -11.417 -70.724 325.703 1.00 57.49 ATOM 20 CA PRO D 241 -9.984 -73.343 328.183 1.00 47.67 ATOM 21 CA SER D 242 -11.127 -72.589 331.693 1.00 49.08 ATOM 22 CA ALA D 243 -7.837 -74.016 332.973 1.00 64.22 ATOM 23 CA THR D 244 -5.514 -77.027 333.062 1.00 90.11 ATOM 24 CA THR D 245 -5.867 -76.893 329.273 1.00 79.88 ATOM 25 CA GLN D 246 -5.309 -74.678 326.238 1.00 61.30 ATOM 26 CA ALA D 247 -8.306 -75.078 323.930 1.00 53.94 ATOM 27 CA SER D 248 -8.007 -74.820 320.150 1.00 46.01 ATOM 28 CA GLN D 249 -10.175 -74.461 317.054 1.00 46.58 ATOM 29 CA ASN D 250 -10.160 -74.266 313.273 1.00 56.52 ATOM 30 CA ILE D 251 -12.605 -71.709 311.957 1.00 75.57 ATOM 31 CA ARG D 252 -13.233 -72.489 308.298 1.00 77.99 ATOM 32 CA LEU D 253 -13.233 -69.026 306.699 1.00 98.91 ATOM 33 CA ASN D 254 -15.828 -68.373 303.989 1.00 80.00 ATOM 34 CA PHE D 255 -14.491 -65.367 302.099 1.00 85.36 ATOM 35 CA ASN D 256 -14.078 -64.464 298.424 1.00 61.07 ATOM 36 CA HIS D 257 -12.465 -62.027 295.978 1.00 51.38 ATOM 37 CA PRO D 258 -8.998 -60.389 296.201 1.00 71.01 ATOM 38 CA THR D 259 -8.601 -59.724 299.951 1.00 63.44 ATOM 39 CA LYS D 260 -6.332 -57.018 301.454 1.00 77.93 ATOM 40 CA TYR D 261 -6.420 -58.307 304.998 1.00 62.41 ATOM 41 CA LEU D 262 -8.234 -60.166 307.758 1.00 70.87 ATOM 42 CA ALA D 263 -9.199 -58.589 311.078 1.00 64.35 ATOM 43 CA TRP D 264 -10.683 -60.428 314.017 1.00 56.49 ATOM 44 CA ASN D 265 -11.540 -60.139 317.705 1.00 56.47 ATOM 45 CA PHE D 266 -12.948 -62.261 320.533 1.00 53.82 ATOM 46 CA ASN D 267 -15.714 -60.328 322.258 1.00 70.15 ATOM 47 CA ASN D 268 -17.975 -60.738 325.291 1.00 83.94 ATOM 48 CA PRO D 269 -21.465 -60.287 323.761 1.00 85.83 ATOM 49 CA THR D 270 -22.746 -58.787 327.027 1.00 67.77 ATOM 50 CA ASN D 271 -20.398 -55.796 326.760 1.00 78.78 ATOM 51 CA TYR D 272 -20.086 -53.816 323.523 1.00 84.26 ATOM 52 CA GLY D 273 -16.403 -53.377 322.700 1.00 83.84 ATOM 53 CA GLN D 274 -15.092 -55.794 325.323 1.00 80.75 ATOM 54 CA TYR D 275 -12.353 -57.688 323.525 1.00 73.13 ATOM 55 CA THR D 276 -10.349 -58.296 326.697 1.00 72.99 ATOM 56 CA ALA D 277 -10.881 -60.179 329.993 1.00 75.41 ATOM 57 CA LEU D 278 -12.157 -58.155 332.952 1.00 56.06 ATOM 58 CA ALA D 279 -9.730 -57.976 335.866 1.00 47.58 ATOM 59 CA ASN D 280 -9.207 -56.341 339.232 1.00 68.39 ATOM 60 CA ILE D 281 -6.777 -53.886 337.669 1.00 62.06 ATOM 61 CA PRO D 282 -7.320 -50.114 337.347 1.00 56.77 ATOM 62 CA GLY D 283 -9.466 -49.579 334.267 1.00 48.54 ATOM 63 CA ALA D 284 -10.018 -53.306 333.796 1.00 41.49 ATOM 64 CA CYS D 285 -13.304 -53.595 335.737 1.00 40.50 ATOM 65 CA SER D 286 -15.948 -51.645 337.629 1.00 43.94 ATOM 66 CA GLY D 287 -14.508 -50.311 340.884 1.00 58.40 ATOM 67 CA ALA D 288 -11.144 -51.893 340.090 1.00 67.45 ATOM 68 CA GLY D 289 -8.441 -51.286 342.672 1.00 92.20 ATOM 69 CA THR D 290 -10.933 -50.784 345.465 1.00 90.11 ATOM 70 CA ALA D 291 -13.336 -52.523 347.862 1.00 97.11 ATOM 71 CA ALA D 292 -16.135 -52.071 345.324 1.00 69.26 ATOM 72 CA ALA D 293 -14.137 -53.923 342.659 1.00 65.92 ATOM 73 CA THR D 294 -16.263 -56.317 340.579 1.00 59.05 ATOM 74 CA VAL D 295 -14.774 -58.512 337.846 1.00 60.48 ATOM 75 CA THR D 296 -18.369 -59.022 336.696 1.00 76.22 ATOM 76 CA THR D 297 -18.744 -55.512 335.266 1.00 55.26 ATOM 77 CA PRO D 298 -16.379 -53.591 332.971 1.00 52.70 ATOM 78 CA ASP D 299 -15.173 -50.026 333.570 1.00 52.86 ATOM 79 CA TYR D 300 -17.368 -48.917 330.654 1.00 58.33 ATOM 80 CA GLY D 301 -15.538 -45.677 330.003 1.00 45.58 ATOM 81 CA ASN D 302 -12.323 -47.676 329.775 1.00 57.45 ATOM 82 CA THR D 303 -13.407 -50.940 328.135 1.00 65.08 ATOM 83 CA GLY D 304 -10.243 -51.109 326.035 1.00 79.33 ATOM 84 CA THR D 305 -6.684 -52.053 327.084 1.00 95.60 ATOM 85 CA TYR D 306 -3.184 -52.400 325.676 1.00 87.80 ATOM 86 CA ASN D 307 -2.350 -55.111 328.207 1.00 66.78 ATOM 87 CA GLU D 308 -1.815 -58.367 326.275 1.00 41.84 ATOM 88 CA GLN D 309 -2.000 -60.229 329.595 1.00 70.60 ATOM 89 CA LEU D 310 -5.765 -59.787 329.285 1.00 64.40 ATOM 90 CA ALA D 311 -6.183 -61.086 325.700 1.00 62.14 ATOM 91 CA VAL D 312 -7.078 -64.785 325.130 1.00 66.18 ATOM 92 CA LEU D 313 -5.463 -65.772 321.854 1.00 75.91 ATOM 93 CA ASP D 314 -2.180 -67.589 322.540 1.00 73.07 ATOM 94 CA SER D 315 -1.152 -68.416 318.976 1.00 68.31 ATOM 95 CA ALA D 316 -2.640 -68.519 315.496 1.00 76.93 ATOM 96 CA LYS D 317 -2.039 -69.358 311.852 1.00 80.49 ATOM 97 CA ILE D 318 -3.993 -69.475 308.610 1.00 86.28 ATOM 98 CA GLN D 319 -4.098 -72.459 306.267 1.00 49.79 ATOM 99 CA LEU D 320 -4.757 -72.668 302.536 1.00 42.85 ATOM 100 CA ASN D 321 -6.050 -76.030 301.402 1.00 41.35 ATOM 101 CA GLY D 322 -4.568 -77.693 304.483 1.00 57.78 ATOM 102 CA GLN D 323 -1.252 -76.025 303.737 1.00 65.32 ATOM 103 CA ASP D 324 0.191 -73.530 306.237 1.00 66.56 ATOM 104 CA ARG D 325 0.063 -69.982 304.852 1.00 79.00 ATOM 105 CA PHE D 326 2.641 -69.161 307.495 1.00 78.03 ATOM 106 CA ALA D 327 4.167 -70.564 310.670 1.00 70.22 ATOM 107 CA THR D 328 2.349 -70.102 313.984 1.00 72.14 ATOM 108 CA ARG D 329 2.818 -66.793 315.769 1.00 63.99 ATOM 109 CA LYS D 330 1.612 -65.679 319.207 1.00 71.85 ATOM 110 CA GLY D 331 -1.473 -63.502 319.511 1.00 76.77 ATOM 111 CA SER D 332 0.718 -60.508 320.384 1.00 42.77 ATOM 112 CA TYR D 333 2.264 -60.701 316.891 1.00 45.86 ATOM 113 CA PHE D 334 -1.024 -60.019 315.090 1.00 66.12 ATOM 114 CA ASN D 335 -1.849 -57.294 317.642 1.00 60.70 ATOM 115 CA LYS D 336 1.496 -55.473 317.781 1.00 42.80 ATOM 116 CA VAL D 337 3.740 -56.493 314.830 1.00 46.89 ATOM 117 CA GLN D 338 1.330 -56.853 311.900 1.00 41.48 ATOM 118 CA PRO D 339 -0.077 -53.363 312.682 1.00 46.84 ATOM 119 CA TYR D 340 3.349 -51.806 313.362 1.00 60.98 ATOM 120 CA GLN D 341 4.587 -53.102 309.994 1.00 67.23 ATOM 121 CA SER D 342 1.579 -52.104 307.883 1.00 72.16 ATOM 122 CA ILE D 343 -0.390 -49.448 309.785 1.00 75.47 ATOM 123 CA GLY D 344 1.902 -47.530 312.113 1.00 75.96 ATOM 124 CA GLY D 345 -0.470 -46.763 314.964 1.00 66.66 ATOM 125 CA VAL D 346 -1.299 -48.729 318.113 1.00 66.21 ATOM 126 CA THR D 347 -4.024 -51.340 318.468 1.00 57.19 ATOM 127 CA PRO D 348 -5.569 -52.271 321.838 1.00 76.18 ATOM 128 CA ALA D 349 -5.146 -55.860 322.992 1.00 64.50 ATOM 129 CA GLY D 350 -7.886 -58.138 321.674 1.00 71.90 ATOM 130 CA VAL D 351 -7.777 -56.943 318.075 1.00 75.44 ATOM 131 CA TYR D 352 -5.771 -58.920 315.531 1.00 82.02 ATOM 132 CA LEU D 353 -4.720 -58.254 311.985 1.00 66.32 ATOM 133 CA TYR D 354 -3.035 -60.194 309.229 1.00 76.85 ATOM 134 CA SER D 355 -2.379 -58.231 306.079 1.00 67.31 ATOM 135 CA PHE D 356 -1.946 -59.529 302.543 1.00 82.83 ATOM 136 CA ALA D 357 -1.055 -55.955 301.546 1.00 93.04 ATOM 137 CA LEU D 358 1.932 -53.679 302.080 1.00 84.68 ATOM 138 CA LYS D 359 -0.372 -50.776 303.034 1.00 84.91 ATOM 139 CA PRO D 360 -3.797 -52.099 304.183 1.00 78.72 ATOM 140 CA ALA D 361 -4.971 -48.622 305.122 1.00 65.83 ATOM 141 CA GLY D 362 -4.243 -47.362 301.615 1.00 59.40 ATOM 142 CA ARG D 363 -6.928 -47.199 298.928 1.00 73.40 ATOM 143 CA GLN D 364 -4.535 -48.107 296.113 1.00 78.26 ATOM 144 CA PRO D 365 -3.951 -51.907 295.967 1.00 92.15 ATOM 145 CA SER D 366 -0.607 -53.147 297.282 1.00 78.50 ATOM 146 CA GLY D 367 -0.963 -56.823 298.025 1.00 84.14 ATOM 147 CA THR D 368 -3.984 -59.083 297.787 1.00 82.78 ATOM 148 CA CYS D 369 -5.104 -62.699 298.143 1.00 72.58 ATOM 149 CA ASN D 370 -7.907 -64.184 296.055 1.00 75.43 ATOM 150 CA PHE D 371 -10.262 -66.181 298.268 1.00 68.43 ATOM 151 CA SER D 372 -12.446 -66.923 295.253 1.00 45.33 ATOM 152 CA ARG D 373 -9.688 -69.357 294.394 1.00 67.85 ATOM 153 CA ILE D 374 -8.985 -70.951 297.777 1.00 50.98 ATOM 154 CA ASP D 375 -11.252 -73.955 298.176 1.00 40.64 ATOM 155 CA ASN D 376 -10.383 -74.164 301.856 1.00 41.05 ATOM 156 CA ALA D 377 -9.362 -71.240 304.057 1.00 61.13 ATOM 157 CA THR D 378 -9.080 -71.952 307.790 1.00 75.79 ATOM 158 CA LEU D 379 -7.993 -70.036 310.882 1.00 93.19 ATOM 159 CA SER D 380 -6.282 -72.301 313.410 1.00 52.81 ATOM 160 CA LEU D 381 -6.640 -70.854 316.918 1.00 55.56 ATOM 161 CA THR D 382 -5.110 -71.912 320.214 1.00 47.10 ATOM 162 CA TYR D 383 -6.160 -70.114 323.369 1.00 51.70 ATOM 163 CA LYS D 384 -4.232 -69.409 326.564 1.00 58.91 ATOM 164 CA THR D 385 -5.153 -71.286 329.727 1.00 52.42 ATOM 165 CA CYS D 386 -7.408 -68.906 331.651 1.00 44.04 ATOM 166 CA SER D 387 -6.079 -69.805 335.091 1.00 59.41 ATOM 167 CA ILE D 388 -5.170 -66.394 336.532 1.00 63.03 ATOM 168 CA ASP D 389 -7.379 -65.192 339.377 1.00 67.31 ATOM 169 CA ALA D 390 -9.041 -62.128 337.838 1.00 50.47 ATOM 170 CA THR D 391 -9.756 -60.519 341.231 1.00 75.75 ATOM 171 CA SER D 392 -6.079 -60.483 342.225 1.00 72.00 ATOM 172 CA PRO D 393 -3.871 -57.535 341.100 1.00 60.02 ATOM 173 CA ALA D 394 -0.659 -59.329 342.107 1.00 52.84 ATOM 174 CA ALA D 395 -1.563 -62.333 339.958 1.00 61.52 ATOM 175 CA VAL D 396 -2.668 -60.428 336.834 1.00 58.08 ATOM 176 CA LEU D 397 0.304 -58.011 336.876 1.00 58.34 ATOM 177 CA GLY D 398 2.929 -60.682 337.544 1.00 56.18 ATOM 178 CA ASN D 399 2.214 -63.614 335.244 1.00 79.68 ATOM 179 CA THR D 400 3.283 -65.803 332.308 1.00111.93 ATOM 180 CA GLU D 401 2.771 -65.361 328.541 1.00120.18 ATOM 181 CA THR D 402 0.517 -68.389 328.065 1.00116.22 ATOM 182 CA VAL D 403 -2.209 -67.633 330.615 1.00 83.60 ATOM 183 CA THR D 404 -4.971 -65.050 331.144 1.00 65.17 ATOM 184 CA ALA D 405 -7.598 -64.408 333.804 1.00 51.46 ATOM 185 CA ASN D 406 -10.464 -66.933 334.139 1.00 44.30 ATOM 186 CA THR D 407 -12.663 -64.019 333.189 1.00 63.05 ATOM 187 CA ALA D 408 -11.522 -64.811 329.628 1.00 77.16 ATOM 188 CA THR D 409 -14.210 -67.511 329.344 1.00 68.30 ATOM 189 CA LEU D 410 -16.822 -64.868 328.532 1.00 87.11 ATOM 190 CA LEU D 411 -15.059 -63.817 325.322 1.00 77.43 ATOM 191 CA THR D 412 -17.029 -66.239 323.130 1.00 54.22 ATOM 192 CA ALA D 413 -18.004 -64.137 320.124 1.00 54.65 ATOM 193 CA LEU D 414 -15.338 -64.579 317.431 1.00 39.42 ATOM 194 CA ASN D 415 -15.728 -61.852 314.819 1.00 44.07 ATOM 195 CA ILE D 416 -13.656 -62.276 311.674 1.00 56.75 ATOM 196 CA TYR D 417 -13.571 -59.565 309.022 1.00 71.89 ATOM 197 CA ALA D 418 -12.109 -59.497 305.528 1.00 65.86 ATOM 198 CA LYS D 419 -11.832 -56.375 303.392 1.00 65.45 ATOM 199 CA ASN D 420 -11.808 -57.035 299.676 1.00 57.50 ATOM 200 CA TYR D 421 -11.674 -55.307 296.316 1.00 74.87 ATOM 201 CA ASN D 422 -14.368 -55.432 293.653 1.00 63.53 ATOM 202 CA VAL D 423 -15.303 -53.450 290.567 1.00 60.14 ATOM 203 CA LEU D 424 -18.336 -51.190 290.245 1.00 40.04 ATOM 204 CA ARG D 425 -19.179 -50.589 286.567 1.00 58.81 ATOM 205 CA ILE D 426 -21.535 -47.713 285.731 1.00 43.62 ATOM 206 CA MET D 427 -23.083 -47.107 282.338 1.00 52.77 ATOM 207 CA SER D 428 -26.347 -46.248 280.607 1.00 71.13 ATOM 208 CA GLY D 429 -27.832 -44.864 283.800 1.00 55.65 ATOM 209 CA MET D 430 -27.180 -47.822 286.059 1.00 47.49 ATOM 210 CA GLY D 431 -24.455 -49.636 287.965 1.00 44.50 ATOM 211 CA GLY D 432 -23.534 -53.073 289.229 1.00 58.96 ATOM 212 CA LEU D 433 -20.709 -55.035 290.775 1.00 59.46 ATOM 213 CA ALA D 434 -18.452 -56.907 288.366 1.00 81.37 ATOM 214 CA TYR D 435 -18.064 -59.854 290.732 1.00 84.70 ATOM 215 CA ALA D 436 -20.461 -61.673 293.029 1.00106.25 ATOM 216 CA ASN D 437 -19.735 -63.986 295.988 1.00107.59 TER