HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 E 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 E 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 E 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 E 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 E 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 E 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 E 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 E 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 E 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 E 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 E 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 E 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 E 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 E 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 E 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 E 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 E 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 E 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU E 222 78.724 -21.783 282.949 1.00 98.37 ATOM 2 CA PRO E 223 81.634 -19.720 284.347 1.00 83.41 ATOM 3 CA HIS E 224 80.792 -17.461 287.298 1.00 77.97 ATOM 4 CA GLU E 225 82.158 -14.147 288.520 1.00 70.40 ATOM 5 CA TYR E 226 81.113 -12.863 291.923 1.00 62.74 ATOM 6 CA LEU E 227 81.932 -9.396 293.170 1.00 59.89 ATOM 7 CA ILE E 228 82.600 -10.073 296.849 1.00 73.20 ATOM 8 CA GLU E 229 83.973 -8.200 299.829 1.00 75.91 ATOM 9 CA GLN E 230 86.873 -8.911 302.143 1.00 53.28 ATOM 10 CA LEU E 231 88.189 -7.682 305.447 1.00 66.62 ATOM 11 CA GLN E 232 91.708 -6.326 306.009 1.00 69.47 ATOM 12 CA PHE E 233 93.401 -5.827 309.385 1.00 77.98 ATOM 13 CA THR E 234 96.652 -5.201 311.367 1.00 59.42 ATOM 14 CA GLY E 235 97.222 -4.507 315.115 1.00 55.66 ATOM 15 CA SER E 236 98.930 -1.202 316.092 1.00 52.33 ATOM 16 CA GLU E 237 100.006 0.376 319.398 1.00 53.48 ATOM 17 CA THR E 238 98.422 3.632 320.565 1.00 49.11 ATOM 18 CA ALA E 239 100.332 6.186 322.617 1.00 52.10 ATOM 19 CA THR E 240 97.965 8.601 324.383 1.00 66.44 ATOM 20 CA PRO E 241 99.475 11.622 326.295 1.00 70.95 ATOM 21 CA SER E 242 99.201 11.087 330.017 1.00 63.78 ATOM 22 CA ALA E 243 98.833 14.853 330.437 1.00 79.71 ATOM 23 CA THR E 244 100.365 18.276 329.800 1.00106.79 ATOM 24 CA THR E 245 100.580 17.053 326.201 1.00 98.65 ATOM 25 CA GLN E 246 98.504 15.791 323.282 1.00 74.54 ATOM 26 CA ALA E 247 100.384 12.906 321.665 1.00 61.74 ATOM 27 CA SER E 248 100.180 12.182 317.942 1.00 55.87 ATOM 28 CA GLN E 249 101.030 9.463 315.429 1.00 58.94 ATOM 29 CA ASN E 250 101.019 8.525 311.763 1.00 63.76 ATOM 30 CA ILE E 251 99.995 4.939 311.201 1.00 76.52 ATOM 31 CA ARG E 252 101.138 3.941 307.723 1.00 69.93 ATOM 32 CA LEU E 253 98.168 1.941 306.415 1.00100.66 ATOM 33 CA ASN E 254 98.949 -1.193 304.394 1.00 89.37 ATOM 34 CA PHE E 255 95.755 -1.904 302.472 1.00 77.20 ATOM 35 CA ASN E 256 94.925 -2.812 298.874 1.00 55.80 ATOM 36 CA HIS E 257 92.124 -3.147 296.309 1.00 65.09 ATOM 37 CA PRO E 258 89.023 -0.918 295.881 1.00 86.61 ATOM 38 CA THR E 259 88.086 -0.046 299.487 1.00 70.12 ATOM 39 CA LYS E 260 84.564 0.946 300.643 1.00 92.92 ATOM 40 CA TYR E 261 85.582 2.283 304.019 1.00 68.94 ATOM 41 CA LEU E 262 87.957 2.248 306.973 1.00 62.03 ATOM 42 CA ALA E 263 86.890 1.430 310.526 1.00 70.02 ATOM 43 CA TRP E 264 89.082 1.705 313.583 1.00 62.96 ATOM 44 CA ASN E 265 89.076 1.673 317.378 1.00 53.37 ATOM 45 CA PHE E 266 91.485 2.119 320.288 1.00 41.48 ATOM 46 CA ASN E 267 91.028 -0.759 322.711 1.00 63.92 ATOM 47 CA ASN E 268 92.336 -1.801 326.132 1.00 81.77 ATOM 48 CA PRO E 269 93.667 -5.331 325.443 1.00 94.61 ATOM 49 CA THR E 270 92.820 -6.391 329.007 1.00 87.65 ATOM 50 CA ASN E 271 89.086 -5.867 328.446 1.00 95.44 ATOM 51 CA TYR E 272 87.340 -7.273 325.366 1.00 80.83 ATOM 52 CA GLY E 273 85.235 -4.532 323.787 1.00 79.67 ATOM 53 CA GLN E 274 86.621 -1.677 325.880 1.00 89.64 ATOM 54 CA TYR E 275 87.057 1.144 323.393 1.00 74.16 ATOM 55 CA THR E 276 86.497 3.855 325.996 1.00 69.29 ATOM 56 CA ALA E 277 88.263 5.043 329.187 1.00 75.68 ATOM 57 CA LEU E 278 86.961 3.668 332.490 1.00 67.75 ATOM 58 CA ALA E 279 85.523 6.311 334.804 1.00 57.08 ATOM 59 CA ASN E 280 83.690 6.748 338.078 1.00 60.91 ATOM 60 CA ILE E 281 80.442 7.299 336.200 1.00 61.42 ATOM 61 CA PRO E 282 77.404 4.980 336.273 1.00 56.67 ATOM 62 CA GLY E 283 78.091 2.202 333.787 1.00 52.09 ATOM 63 CA ALA E 284 81.647 3.388 333.183 1.00 45.67 ATOM 64 CA CYS E 285 83.381 1.169 335.773 1.00 48.97 ATOM 65 CA SER E 286 82.846 -1.579 338.333 1.00 53.39 ATOM 66 CA GLY E 287 80.845 -0.245 341.281 1.00 50.09 ATOM 67 CA ALA E 288 80.667 3.188 339.656 1.00 45.22 ATOM 68 CA GLY E 289 78.735 5.787 341.617 1.00 70.06 ATOM 69 CA THR E 290 79.359 4.062 344.917 1.00 75.01 ATOM 70 CA ALA E 291 81.927 3.383 347.656 1.00 82.88 ATOM 71 CA ALA E 292 82.973 0.210 345.830 1.00 63.48 ATOM 72 CA ALA E 293 83.764 2.183 342.670 1.00 59.69 ATOM 73 CA THR E 294 86.970 1.034 340.944 1.00 73.38 ATOM 74 CA VAL E 295 88.305 2.719 337.801 1.00 78.16 ATOM 75 CA THR E 296 90.517 -0.364 337.437 1.00 82.68 ATOM 76 CA THR E 297 87.678 -2.664 336.375 1.00 60.06 ATOM 77 CA PRO E 298 84.963 -2.081 333.758 1.00 61.48 ATOM 78 CA ASP E 299 81.235 -2.604 334.334 1.00 60.46 ATOM 79 CA TYR E 300 81.432 -5.658 332.053 1.00 63.19 ATOM 80 CA GLY E 301 77.741 -5.781 331.249 1.00 58.62 ATOM 81 CA ASN E 302 77.977 -2.150 330.178 1.00 70.10 ATOM 82 CA THR E 303 81.430 -1.900 328.588 1.00 83.88 ATOM 83 CA GLY E 304 80.165 0.397 325.839 1.00 87.05 ATOM 84 CA THR E 305 79.251 4.111 326.007 1.00 78.69 ATOM 85 CA TYR E 306 77.953 6.935 323.846 1.00 75.38 ATOM 86 CA ASN E 307 79.826 9.503 325.931 1.00 56.33 ATOM 87 CA GLU E 308 82.513 11.060 323.704 1.00 49.65 ATOM 88 CA GLN E 309 84.092 12.535 326.843 1.00 72.21 ATOM 89 CA LEU E 310 85.509 9.052 327.401 1.00 59.58 ATOM 90 CA ALA E 311 87.010 8.496 323.914 1.00 52.51 ATOM 91 CA VAL E 312 90.706 9.353 323.294 1.00 59.34 ATOM 92 CA LEU E 313 90.950 10.454 319.682 1.00 73.21 ATOM 93 CA ASP E 314 90.950 14.265 319.499 1.00 78.39 ATOM 94 CA SER E 315 91.343 14.723 315.744 1.00 79.02 ATOM 95 CA ALA E 316 92.293 12.713 312.680 1.00 81.62 ATOM 96 CA LYS E 317 92.904 12.796 308.942 1.00 81.51 ATOM 97 CA ILE E 318 94.078 10.454 306.210 1.00 98.87 ATOM 98 CA GLN E 319 96.850 11.242 303.744 1.00 58.89 ATOM 99 CA LEU E 320 97.510 9.938 300.242 1.00 54.72 ATOM 100 CA ASN E 321 101.129 10.166 299.184 1.00 43.30 ATOM 101 CA GLY E 322 101.749 12.915 301.741 1.00 53.03 ATOM 102 CA GLN E 323 98.738 14.780 300.401 1.00 54.52 ATOM 103 CA ASP E 324 95.752 15.392 302.693 1.00 63.60 ATOM 104 CA ARG E 325 92.754 13.292 301.626 1.00 82.63 ATOM 105 CA PHE E 326 90.691 15.697 303.687 1.00 87.00 ATOM 106 CA ALA E 327 91.058 18.384 306.342 1.00 70.93 ATOM 107 CA THR E 328 91.373 17.367 309.996 1.00 70.74 ATOM 108 CA ARG E 329 88.167 16.607 311.866 1.00 70.40 ATOM 109 CA LYS E 330 87.611 15.832 315.557 1.00 76.92 ATOM 110 CA GLY E 331 87.155 12.246 316.684 1.00 84.54 ATOM 111 CA SER E 332 83.446 12.894 317.266 1.00 49.63 ATOM 112 CA TYR E 333 83.030 13.507 313.514 1.00 44.16 ATOM 113 CA PHE E 334 84.079 9.980 312.530 1.00 62.41 ATOM 114 CA ASN E 335 81.964 8.564 315.388 1.00 56.90 ATOM 115 CA LYS E 336 78.765 10.584 314.917 1.00 44.21 ATOM 116 CA VAL E 337 78.723 12.308 311.482 1.00 51.87 ATOM 117 CA GLN E 338 80.315 9.761 309.133 1.00 39.87 ATOM 118 CA PRO E 339 77.886 7.089 310.452 1.00 44.44 ATOM 119 CA TYR E 340 74.858 9.425 310.471 1.00 70.47 ATOM 120 CA GLN E 341 75.552 10.326 306.830 1.00 76.67 ATOM 121 CA SER E 342 76.202 6.816 305.510 1.00 76.30 ATOM 122 CA ILE E 343 74.721 4.315 307.980 1.00 71.63 ATOM 123 CA GLY E 344 71.846 5.885 309.877 1.00 77.01 ATOM 124 CA GLY E 345 72.177 4.151 313.228 1.00 66.27 ATOM 125 CA VAL E 346 74.160 5.089 316.332 1.00 68.68 ATOM 126 CA THR E 347 77.737 4.085 317.092 1.00 57.47 ATOM 127 CA PRO E 348 79.143 3.973 320.646 1.00 80.85 ATOM 128 CA ALA E 349 82.041 6.294 321.422 1.00 70.54 ATOM 129 CA GLY E 350 85.406 4.737 320.579 1.00 73.09 ATOM 130 CA VAL E 351 84.460 3.454 317.138 1.00 79.63 ATOM 131 CA TYR E 352 85.352 5.515 314.081 1.00 79.83 ATOM 132 CA LEU E 353 84.424 5.292 310.447 1.00 61.97 ATOM 133 CA TYR E 354 85.445 7.017 307.257 1.00 64.81 ATOM 134 CA SER E 355 83.545 5.934 304.191 1.00 70.16 ATOM 135 CA PHE E 356 84.631 6.115 300.563 1.00 80.55 ATOM 136 CA ALA E 357 81.114 4.958 299.650 1.00100.35 ATOM 137 CA LEU E 358 77.667 6.544 299.674 1.00 87.42 ATOM 138 CA LYS E 359 76.177 3.426 301.313 1.00 90.66 ATOM 139 CA PRO E 360 78.920 1.396 303.090 1.00 87.53 ATOM 140 CA ALA E 361 76.383 -1.036 304.509 1.00 77.26 ATOM 141 CA GLY E 362 75.081 -1.804 301.024 1.00 63.22 ATOM 142 CA ARG E 363 76.335 -4.778 299.013 1.00 71.79 ATOM 143 CA GLN E 364 76.117 -2.952 295.683 1.00 67.70 ATOM 144 CA PRO E 365 79.182 -0.689 295.145 1.00 82.27 ATOM 145 CA SER E 366 78.623 3.043 295.600 1.00 76.99 ATOM 146 CA GLY E 367 81.986 4.648 296.142 1.00 85.60 ATOM 147 CA THR E 368 85.420 3.089 296.412 1.00 87.27 ATOM 148 CA CYS E 369 89.114 3.927 296.749 1.00 70.67 ATOM 149 CA ASN E 370 91.844 1.771 295.229 1.00 72.00 ATOM 150 CA PHE E 371 94.623 1.212 297.759 1.00 63.68 ATOM 151 CA SER E 372 96.445 -0.981 295.252 1.00 57.82 ATOM 152 CA ARG E 373 97.308 2.322 293.638 1.00 64.61 ATOM 153 CA ILE E 374 98.227 4.445 296.661 1.00 65.53 ATOM 154 CA ASP E 375 101.925 4.025 297.335 1.00 53.03 ATOM 155 CA ASN E 376 101.533 5.699 300.712 1.00 38.52 ATOM 156 CA ALA E 377 98.385 5.685 302.838 1.00 69.24 ATOM 157 CA THR E 378 98.712 7.108 306.355 1.00 76.63 ATOM 158 CA LEU E 379 96.375 7.830 309.260 1.00 99.31 ATOM 159 CA SER E 380 97.439 10.930 311.185 1.00 58.55 ATOM 160 CA LEU E 381 96.187 10.737 314.778 1.00 64.92 ATOM 161 CA THR E 382 96.244 13.286 317.573 1.00 55.76 ATOM 162 CA TYR E 383 95.027 12.257 321.000 1.00 62.21 ATOM 163 CA LYS E 384 93.350 14.289 323.735 1.00 65.91 ATOM 164 CA THR E 385 95.298 15.111 326.881 1.00 66.37 ATOM 165 CA CYS E 386 94.198 12.505 329.418 1.00 48.48 ATOM 166 CA SER E 387 94.206 14.837 332.412 1.00 49.40 ATOM 167 CA ILE E 388 90.713 14.325 333.852 1.00 54.37 ATOM 168 CA ASP E 389 90.586 12.523 337.191 1.00 50.06 ATOM 169 CA ALA E 390 88.753 9.307 336.278 1.00 53.39 ATOM 170 CA THR E 391 87.533 8.709 339.851 1.00 67.66 ATOM 171 CA SER E 392 85.706 12.048 340.009 1.00 70.14 ATOM 172 CA PRO E 393 82.115 12.277 338.641 1.00 66.07 ATOM 173 CA ALA E 394 82.117 16.090 338.787 1.00 60.00 ATOM 174 CA ALA E 395 85.278 16.253 336.684 1.00 74.60 ATOM 175 CA VAL E 396 84.269 13.703 334.019 1.00 69.69 ATOM 176 CA LEU E 397 80.727 15.099 333.579 1.00 64.06 ATOM 177 CA GLY E 398 81.794 18.751 333.461 1.00 76.27 ATOM 178 CA ASN E 399 84.810 19.006 331.173 1.00104.82 ATOM 179 CA THR E 400 86.354 20.285 327.926 1.00121.03 ATOM 180 CA GLU E 401 86.372 18.785 324.405 1.00124.37 ATOM 181 CA THR E 402 90.127 18.192 324.224 1.00110.63 ATOM 182 CA VAL E 403 90.650 16.090 327.356 1.00 77.90 ATOM 183 CA THR E 404 89.672 12.638 328.662 1.00 65.96 ATOM 184 CA ALA E 405 90.247 10.699 331.872 1.00 59.86 ATOM 185 CA ASN E 406 93.813 9.531 332.650 1.00 45.60 ATOM 186 CA THR E 407 92.341 6.066 332.417 1.00 80.76 ATOM 187 CA ALA E 408 92.648 6.603 328.645 1.00 82.73 ATOM 188 CA THR E 409 96.311 5.531 328.766 1.00 67.03 ATOM 189 CA LEU E 410 95.273 1.868 328.739 1.00 73.54 ATOM 190 CA LEU E 411 93.648 2.146 325.303 1.00 65.68 ATOM 191 CA THR E 412 96.810 1.118 323.432 1.00 54.39 ATOM 192 CA ALA E 413 95.561 -1.388 320.869 1.00 59.83 ATOM 193 CA LEU E 414 94.795 0.481 317.632 1.00 41.06 ATOM 194 CA ASN E 415 92.703 -1.736 315.371 1.00 54.21 ATOM 195 CA ILE E 416 92.222 -0.484 311.827 1.00 62.02 ATOM 196 CA TYR E 417 89.916 -2.294 309.417 1.00 77.55 ATOM 197 CA ALA E 418 89.314 -1.875 305.702 1.00 61.48 ATOM 198 CA LYS E 419 86.535 -3.602 303.784 1.00 66.60 ATOM 199 CA ASN E 420 87.263 -4.111 300.116 1.00 68.70 ATOM 200 CA TYR E 421 85.831 -5.575 296.939 1.00 87.75 ATOM 201 CA ASN E 422 87.340 -8.416 294.933 1.00 75.04 ATOM 202 CA VAL E 423 86.179 -10.849 292.277 1.00 66.85 ATOM 203 CA LEU E 424 85.654 -14.569 292.791 1.00 52.49 ATOM 204 CA ARG E 425 85.686 -16.411 289.440 1.00 60.64 ATOM 205 CA ILE E 426 84.318 -19.966 289.348 1.00 36.26 ATOM 206 CA MET E 427 84.673 -22.338 286.428 1.00 48.95 ATOM 207 CA SER E 428 85.551 -25.916 285.522 1.00 79.93 ATOM 208 CA GLY E 429 84.901 -27.112 289.052 1.00 59.25 ATOM 209 CA MET E 430 87.091 -24.643 290.900 1.00 52.35 ATOM 210 CA GLY E 431 87.304 -21.032 292.026 1.00 42.85 ATOM 211 CA GLY E 432 89.826 -18.340 292.809 1.00 63.45 ATOM 212 CA LEU E 433 90.133 -14.653 293.555 1.00 61.34 ATOM 213 CA ALA E 434 90.809 -12.392 290.583 1.00 74.65 ATOM 214 CA TYR E 435 93.111 -10.134 292.588 1.00 72.96 ATOM 215 CA ALA E 436 95.751 -10.793 295.222 1.00 76.65 ATOM 216 CA ASN E 437 97.306 -8.408 297.779 1.00 76.96 TER