HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 F 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 F 197 THR PHE PHE LYS THR VAL TYR ARG ARG TYR THR ASN PHE SEQRES 2 F 197 ALA ILE GLU SER ILE GLN GLN THR ILE ASN GLY SER VAL SEQRES 3 F 197 GLY PHE GLY ASN LYS VAL SER THR GLN ILE SER ARG ASN SEQRES 4 F 197 GLY ASP LEU ILE THR ASP ILE VAL VAL GLU PHE VAL LEU SEQRES 5 F 197 THR LYS GLY GLY ASN GLY GLY THR THR TYR TYR PRO ALA SEQRES 6 F 197 GLU GLU LEU LEU GLN ASP VAL GLU LEU GLU ILE GLY GLY SEQRES 7 F 197 GLN ARG ILE ASP LYS HIS TYR ASN ASP TRP PHE ARG THR SEQRES 8 F 197 TYR ASP ALA LEU PHE ARG MET ASN ASP ASP ARG TYR ASN SEQRES 9 F 197 TYR ARG ARG MET THR ASP TRP VAL ASN ASN GLU LEU VAL SEQRES 10 F 197 GLY ALA GLN LYS ARG PHE TYR VAL PRO LEU ILE PHE PHE SEQRES 11 F 197 PHE ASN GLN THR PRO GLY LEU ALA LEU PRO LEU ILE ALA SEQRES 12 F 197 LEU GLN TYR HIS GLU VAL LYS LEU TYR PHE THR LEU ALA SEQRES 13 F 197 SER GLN VAL GLN GLY VAL ASN TYR ASN GLY SER SER ALA SEQRES 14 F 197 ILE ALA GLY ALA ALA GLN PRO THR MET SER VAL TRP VAL SEQRES 15 F 197 ASP TYR ILE PHE LEU ASP THR GLN GLU ARG THR ARG PHE SEQRES 16 F 197 ALA GLN ATOM 1 CA THR F 25 66.589 -15.428 290.673 1.00 61.21 ATOM 2 CA PHE F 26 67.636 -14.425 294.195 1.00 54.18 ATOM 3 CA PHE F 27 70.974 -16.198 293.984 1.00 61.60 ATOM 4 CA LYS F 28 72.900 -14.372 291.271 1.00 79.31 ATOM 5 CA THR F 29 72.686 -10.628 291.732 1.00101.02 ATOM 6 CA VAL F 30 74.297 -8.549 288.986 1.00 99.26 ATOM 7 CA TYR F 31 75.360 -5.287 290.645 1.00 93.86 ATOM 8 CA ARG F 32 75.460 -2.145 288.544 1.00 82.25 ATOM 9 CA ARG F 33 78.489 -0.174 287.410 1.00 59.74 ATOM 10 CA TYR F 34 78.542 3.505 288.306 1.00 53.44 ATOM 11 CA THR F 35 80.293 6.755 287.458 1.00 61.39 ATOM 12 CA ASN F 36 83.741 7.177 289.032 1.00 71.70 ATOM 13 CA PHE F 37 83.812 9.849 291.731 1.00 64.75 ATOM 14 CA ALA F 38 85.402 11.041 294.968 1.00 68.15 ATOM 15 CA ILE F 39 84.075 12.889 298.000 1.00 99.15 ATOM 16 CA GLU F 40 85.632 15.427 300.321 1.00 88.58 ATOM 17 CA SER F 41 84.301 17.601 303.136 1.00 69.27 ATOM 18 CA ILE F 42 85.806 21.074 302.915 1.00 43.60 ATOM 19 CA GLN F 43 85.383 23.851 305.468 1.00 31.61 ATOM 20 CA GLN F 44 83.565 27.019 304.467 1.00 44.15 ATOM 21 CA THR F 45 84.499 30.621 305.159 1.00 54.10 ATOM 22 CA ILE F 46 81.962 32.042 307.571 1.00 43.70 ATOM 23 CA ASN F 47 81.175 35.710 306.888 1.00 47.00 ATOM 24 CA GLY F 48 80.339 38.059 309.747 1.00 43.13 ATOM 25 CA SER F 49 80.799 37.863 313.492 1.00 37.79 ATOM 26 CA VAL F 50 79.621 34.624 315.113 1.00 54.84 ATOM 27 CA GLY F 51 77.579 35.139 318.263 1.00 67.96 ATOM 28 CA PHE F 52 74.132 34.884 319.843 1.00 96.42 ATOM 29 CA GLY F 53 71.701 37.044 317.893 1.00 72.96 ATOM 30 CA ASN F 54 74.015 37.590 314.960 1.00 60.10 ATOM 31 CA LYS F 55 73.324 36.990 311.281 1.00 35.23 ATOM 32 CA VAL F 56 76.122 35.278 309.396 1.00 33.16 ATOM 33 CA SER F 57 76.487 33.998 305.834 1.00 43.59 ATOM 34 CA THR F 58 78.655 31.895 303.537 1.00 59.18 ATOM 35 CA GLN F 59 79.226 31.704 299.796 1.00 67.39 ATOM 36 CA ILE F 60 79.994 28.080 298.945 1.00 99.20 ATOM 37 CA SER F 61 83.477 27.899 297.442 1.00 78.71 ATOM 38 CA ARG F 62 83.933 26.155 294.104 1.00 56.91 ATOM 39 CA ASN F 63 86.262 23.363 295.183 1.00 55.40 ATOM 40 CA GLY F 64 84.286 20.407 293.936 1.00 55.16 ATOM 41 CA ASP F 65 81.966 19.703 291.042 1.00 72.26 ATOM 42 CA LEU F 66 78.849 18.876 293.068 1.00 71.60 ATOM 43 CA ILE F 67 77.793 19.461 296.660 1.00 63.65 ATOM 44 CA THR F 68 75.664 17.263 298.875 1.00 70.51 ATOM 45 CA ASP F 69 75.885 17.241 302.674 1.00 78.94 ATOM 46 CA ILE F 70 76.450 20.412 304.702 1.00 81.47 ATOM 47 CA VAL F 71 77.137 20.276 308.442 1.00 72.88 ATOM 48 CA VAL F 72 77.242 23.208 310.816 1.00 53.89 ATOM 49 CA GLU F 73 79.585 22.663 313.770 1.00 46.52 ATOM 50 CA PHE F 74 79.060 24.403 317.092 1.00 49.83 ATOM 51 CA VAL F 75 80.993 24.295 320.351 1.00 58.98 ATOM 52 CA LEU F 76 78.964 25.250 323.411 1.00 60.52 ATOM 53 CA THR F 77 79.344 25.016 327.195 1.00 59.22 ATOM 54 CA LYS F 78 76.532 23.999 329.591 1.00 74.92 ATOM 55 CA GLY F 79 75.336 26.573 332.106 1.00 79.78 ATOM 56 CA GLY F 80 73.318 24.097 334.140 1.00 88.48 ATOM 57 CA ASN F 81 73.308 20.490 335.297 1.00 76.25 ATOM 58 CA GLY F 82 71.361 17.449 334.091 1.00 78.06 ATOM 59 CA GLY F 83 68.177 17.772 332.065 1.00 63.65 ATOM 60 CA THR F 84 68.722 21.502 331.678 1.00 60.49 ATOM 61 CA THR F 85 69.261 21.398 327.929 1.00 55.13 ATOM 62 CA TYR F 86 67.048 20.461 324.964 1.00 54.26 ATOM 63 CA TYR F 87 68.525 20.359 321.462 1.00 63.52 ATOM 64 CA PRO F 88 70.653 23.528 322.004 1.00 70.67 ATOM 65 CA ALA F 89 72.603 23.203 318.741 1.00 64.95 ATOM 66 CA GLU F 90 69.348 22.764 316.857 1.00 67.77 ATOM 67 CA GLU F 91 67.795 25.838 318.497 1.00 64.36 ATOM 68 CA LEU F 92 70.935 27.944 317.921 1.00 92.83 ATOM 69 CA LEU F 93 70.308 27.605 314.175 1.00 90.30 ATOM 70 CA GLN F 94 67.179 29.776 314.228 1.00 68.35 ATOM 71 CA ASP F 95 66.985 29.661 310.411 1.00 69.97 ATOM 72 CA VAL F 96 68.985 28.848 307.280 1.00 82.53 ATOM 73 CA GLU F 97 68.352 30.279 303.818 1.00 71.46 ATOM 74 CA LEU F 98 69.663 28.756 300.585 1.00 79.35 ATOM 75 CA GLU F 99 70.195 31.299 297.816 1.00 66.48 ATOM 76 CA ILE F 100 71.379 30.688 294.237 1.00 76.42 ATOM 77 CA GLY F 101 72.247 33.565 291.910 1.00 66.87 ATOM 78 CA GLY F 102 70.644 35.978 294.348 1.00 73.55 ATOM 79 CA GLN F 103 67.395 33.992 294.206 1.00 76.04 ATOM 80 CA ARG F 104 66.118 32.197 297.280 1.00 82.39 ATOM 81 CA ILE F 105 65.556 28.453 296.783 1.00 83.60 ATOM 82 CA ASP F 106 64.491 27.434 300.290 1.00 82.07 ATOM 83 CA LYS F 107 64.650 28.477 303.945 1.00 93.43 ATOM 84 CA HIS F 108 64.405 26.406 307.129 1.00 97.27 ATOM 85 CA TYR F 109 63.681 27.296 310.737 1.00 69.15 ATOM 86 CA ASN F 110 64.267 26.170 314.299 1.00 56.17 ATOM 87 CA ASP F 111 60.839 24.701 314.771 1.00 57.54 ATOM 88 CA TRP F 112 61.024 22.965 311.373 1.00 67.57 ATOM 89 CA PHE F 113 64.109 20.973 312.331 1.00 77.43 ATOM 90 CA ARG F 114 62.300 20.067 315.565 1.00 69.41 ATOM 91 CA THR F 115 59.119 19.100 313.687 1.00 65.18 ATOM 92 CA TYR F 116 61.121 17.222 311.070 1.00 60.99 ATOM 93 CA ASP F 117 62.917 15.220 313.740 1.00 77.07 ATOM 94 CA ALA F 118 59.649 14.419 315.532 1.00 72.26 ATOM 95 CA LEU F 119 58.040 13.248 312.309 1.00 40.16 ATOM 96 CA PHE F 120 60.714 11.909 309.924 1.00 47.22 ATOM 97 CA ARG F 121 63.670 10.756 311.996 1.00 69.77 ATOM 98 CA MET F 122 63.419 7.556 314.039 1.00 85.16 ATOM 99 CA ASN F 123 65.064 4.880 316.120 1.00 92.13 ATOM 100 CA ASP F 124 68.878 4.980 316.587 1.00 78.86 ATOM 101 CA ASP F 125 69.219 7.563 313.827 1.00 64.20 ATOM 102 CA ARG F 126 67.030 9.926 315.827 1.00 70.88 ATOM 103 CA TYR F 127 69.044 9.211 318.958 1.00 70.17 ATOM 104 CA ASN F 128 72.307 9.800 317.097 1.00 50.56 ATOM 105 CA TYR F 129 70.845 13.121 315.935 1.00 46.78 ATOM 106 CA ARG F 130 70.283 14.173 319.543 1.00 61.15 ATOM 107 CA ARG F 131 73.862 13.221 320.411 1.00 54.63 ATOM 108 CA MET F 132 74.915 15.575 317.610 1.00 53.34 ATOM 109 CA THR F 133 72.488 18.240 318.798 1.00 65.20 ATOM 110 CA ASP F 134 72.968 18.261 322.587 1.00 72.08 ATOM 111 CA TRP F 135 74.215 16.825 325.844 1.00 68.99 ATOM 112 CA VAL F 136 72.834 13.331 326.385 1.00 72.91 ATOM 113 CA ASN F 137 75.029 12.010 329.222 1.00 74.75 ATOM 114 CA ASN F 138 73.846 14.054 332.216 1.00 71.33 ATOM 115 CA GLU F 139 76.610 16.623 331.892 1.00 67.92 ATOM 116 CA LEU F 140 76.980 19.313 334.547 1.00 66.81 ATOM 117 CA VAL F 141 77.764 23.027 334.464 1.00 66.85 ATOM 118 CA GLY F 142 80.880 23.873 332.479 1.00 58.31 ATOM 119 CA ALA F 143 80.739 20.829 330.192 1.00 70.10 ATOM 120 CA GLN F 144 81.896 21.785 326.659 1.00 81.45 ATOM 121 CA LYS F 145 80.725 19.792 323.633 1.00 85.21 ATOM 122 CA ARG F 146 81.105 19.667 319.840 1.00 85.70 ATOM 123 CA PHE F 147 77.761 19.848 318.036 1.00 68.88 ATOM 124 CA TYR F 148 76.952 18.928 314.443 1.00 56.68 ATOM 125 CA VAL F 149 73.721 20.169 312.908 1.00 56.96 ATOM 126 CA PRO F 150 73.042 18.549 309.497 1.00 65.45 ATOM 127 CA LEU F 151 71.064 20.668 307.014 1.00 64.17 ATOM 128 CA ILE F 152 68.070 19.158 305.213 1.00 53.79 ATOM 129 CA PHE F 153 67.787 20.974 301.863 1.00 52.12 ATOM 130 CA PHE F 154 66.940 18.988 298.716 1.00 67.25 ATOM 131 CA PHE F 155 70.575 18.395 297.776 1.00 71.60 ATOM 132 CA ASN F 156 71.440 17.456 301.393 1.00 55.84 ATOM 133 CA GLN F 157 68.913 14.605 301.455 1.00 71.96 ATOM 134 CA THR F 158 69.876 12.702 298.289 1.00 92.41 ATOM 135 CA PRO F 159 73.073 12.392 296.289 1.00 81.52 ATOM 136 CA GLY F 160 70.710 12.112 293.311 1.00 98.45 ATOM 137 CA LEU F 161 69.826 15.778 293.721 1.00 91.69 ATOM 138 CA ALA F 162 73.432 16.882 294.221 1.00 75.18 ATOM 139 CA LEU F 163 73.662 20.600 293.355 1.00 79.88 ATOM 140 CA PRO F 164 76.005 20.901 290.306 1.00 78.20 ATOM 141 CA LEU F 165 78.414 23.768 291.017 1.00 73.50 ATOM 142 CA ILE F 166 80.164 23.252 287.689 1.00 67.38 ATOM 143 CA ALA F 167 76.836 23.962 286.016 1.00 63.82 ATOM 144 CA LEU F 168 76.339 27.180 287.999 1.00 71.39 ATOM 145 CA GLN F 169 79.477 28.949 286.814 1.00 64.99 ATOM 146 CA TYR F 170 77.666 32.309 286.972 1.00 60.67 ATOM 147 CA HIS F 171 75.360 31.770 289.944 1.00 64.90 ATOM 148 CA GLU F 172 76.704 32.136 293.480 1.00 56.45 ATOM 149 CA VAL F 173 75.399 29.668 296.047 1.00 87.32 ATOM 150 CA LYS F 174 74.993 31.221 299.487 1.00 66.76 ATOM 151 CA LEU F 175 73.676 30.318 302.926 1.00 71.49 ATOM 152 CA TYR F 176 72.283 32.788 305.458 1.00 38.28 ATOM 153 CA PHE F 177 72.177 31.791 309.129 1.00 49.29 ATOM 154 CA THR F 178 70.530 33.615 312.013 1.00 45.36 ATOM 155 CA LEU F 179 71.693 32.442 315.424 1.00 90.22 ATOM 156 CA ALA F 180 69.228 32.336 318.312 1.00 87.56 ATOM 157 CA SER F 181 69.848 34.995 320.941 1.00 81.01 ATOM 158 CA GLN F 182 68.781 32.939 323.970 1.00 80.43 ATOM 159 CA VAL F 183 69.383 29.207 324.231 1.00 80.31 ATOM 160 CA GLN F 184 68.159 27.465 327.392 1.00 46.30 ATOM 161 CA GLY F 185 70.814 25.752 329.491 1.00 78.23 ATOM 162 CA VAL F 186 73.599 27.506 327.608 1.00 86.98 ATOM 163 CA ASN F 187 72.902 31.220 327.232 1.00 72.61 ATOM 164 CA TYR F 188 70.081 31.690 329.741 1.00 66.15 ATOM 165 CA ASN F 189 68.148 29.723 332.351 1.00 66.58 ATOM 166 CA GLY F 190 64.570 30.726 331.721 1.00 48.63 ATOM 167 CA SER F 191 64.456 34.501 331.342 1.00 62.96 ATOM 168 CA SER F 192 67.621 34.930 333.450 1.00 68.97 ATOM 169 CA ALA F 193 70.925 35.263 331.626 1.00 52.93 ATOM 170 CA ILE F 194 73.724 32.949 332.791 1.00 39.37 ATOM 171 CA ALA F 195 76.794 34.961 333.764 1.00 35.96 ATOM 172 CA GLY F 196 80.101 34.063 332.139 1.00 58.03 ATOM 173 CA ALA F 197 78.163 32.270 329.391 1.00 28.93 ATOM 174 CA ALA F 198 80.608 31.761 326.535 1.00 48.97 ATOM 175 CA GLN F 199 79.710 32.785 322.997 1.00 48.48 ATOM 176 CA PRO F 200 79.224 30.057 320.383 1.00 49.41 ATOM 177 CA THR F 201 81.979 28.884 318.020 1.00 49.04 ATOM 178 CA MET F 202 80.734 28.060 314.538 1.00 54.72 ATOM 179 CA SER F 203 82.104 26.138 311.555 1.00 48.63 ATOM 180 CA VAL F 204 80.479 25.275 308.207 1.00 54.33 ATOM 181 CA TRP F 205 81.458 22.144 306.275 1.00 58.00 ATOM 182 CA VAL F 206 80.383 21.122 302.770 1.00 76.61 ATOM 183 CA ASP F 207 80.770 17.737 301.056 1.00 84.36 ATOM 184 CA TYR F 208 82.002 17.927 297.455 1.00 73.48 ATOM 185 CA ILE F 209 81.800 15.301 294.758 1.00 83.26 ATOM 186 CA PHE F 210 84.652 15.258 292.254 1.00 73.03 ATOM 187 CA LEU F 211 83.502 13.742 288.987 1.00 78.33 ATOM 188 CA ASP F 212 85.353 12.056 286.168 1.00 68.78 ATOM 189 CA THR F 213 86.060 13.810 282.840 1.00 68.34 ATOM 190 CA GLN F 214 83.236 12.040 281.034 1.00 76.95 ATOM 191 CA GLU F 215 80.439 13.123 283.364 1.00 77.00 ATOM 192 CA ARG F 216 82.062 16.500 284.105 1.00 80.29 ATOM 193 CA THR F 217 81.722 17.499 280.465 1.00 82.92 ATOM 194 CA ARG F 218 78.069 16.534 280.478 1.00 75.36 ATOM 195 CA PHE F 219 77.280 18.389 283.706 1.00 70.42 ATOM 196 CA ALA F 220 78.910 21.441 282.169 1.00 66.65 ATOM 197 CA GLN F 221 77.457 21.068 278.690 1.00 71.76 TER