HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 F 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 F 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 F 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 F 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 F 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 F 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 F 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 F 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 F 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 F 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 F 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 F 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 F 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 F 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 F 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 F 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 F 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 F 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU F 222 73.817 19.997 279.015 1.00 72.88 ATOM 2 CA PRO F 223 70.739 21.687 280.549 1.00 63.53 ATOM 3 CA HIS F 224 69.540 20.239 283.863 1.00 65.26 ATOM 4 CA GLU F 225 66.141 19.964 285.510 1.00 62.34 ATOM 5 CA TYR F 226 65.925 18.876 289.129 1.00 57.37 ATOM 6 CA LEU F 227 62.669 18.056 290.855 1.00 68.55 ATOM 7 CA ILE F 228 63.314 19.436 294.339 1.00 71.78 ATOM 8 CA GLU F 229 61.341 20.096 297.493 1.00 75.44 ATOM 9 CA GLN F 230 60.756 23.243 299.492 1.00 69.27 ATOM 10 CA LEU F 231 59.395 24.209 302.866 1.00 96.71 ATOM 11 CA GLN F 232 56.535 26.662 303.432 1.00 83.85 ATOM 12 CA PHE F 233 55.626 28.315 306.740 1.00 84.28 ATOM 13 CA THR F 234 53.677 31.073 308.606 1.00 68.95 ATOM 14 CA GLY F 235 53.202 31.711 312.377 1.00 73.37 ATOM 15 CA SER F 236 49.609 31.706 313.762 1.00 56.77 ATOM 16 CA GLU F 237 48.072 32.291 317.207 1.00 54.25 ATOM 17 CA THR F 238 46.192 29.488 318.961 1.00 59.90 ATOM 18 CA ALA F 239 43.263 30.162 321.276 1.00 66.09 ATOM 19 CA THR F 240 42.564 27.167 323.534 1.00 71.68 ATOM 20 CA PRO F 241 39.418 27.249 325.808 1.00 64.75 ATOM 21 CA SER F 242 40.416 27.748 329.407 1.00 62.99 ATOM 22 CA ALA F 243 37.409 25.652 330.437 1.00 67.44 ATOM 23 CA THR F 244 33.632 25.233 330.259 1.00 94.52 ATOM 24 CA THR F 245 34.188 25.553 326.506 1.00 97.11 ATOM 25 CA GLN F 246 35.995 23.996 323.549 1.00 86.56 ATOM 26 CA ALA F 247 37.361 26.816 321.392 1.00 78.61 ATOM 27 CA SER F 248 37.682 26.512 317.618 1.00 66.08 ATOM 28 CA GLN F 249 39.321 28.249 314.666 1.00 68.07 ATOM 29 CA ASN F 250 39.739 28.225 310.905 1.00 67.01 ATOM 30 CA ILE F 251 43.275 29.014 309.844 1.00 74.88 ATOM 31 CA ARG F 252 43.184 30.041 306.193 1.00 76.85 ATOM 32 CA LEU F 253 46.245 28.277 304.760 1.00 88.49 ATOM 33 CA ASN F 254 48.330 30.217 302.230 1.00 83.21 ATOM 34 CA PHE F 255 50.330 27.556 300.407 1.00 83.00 ATOM 35 CA ASN F 256 51.139 26.819 296.766 1.00 76.07 ATOM 36 CA HIS F 257 52.549 24.231 294.345 1.00 65.30 ATOM 37 CA PRO F 258 52.133 20.415 294.453 1.00 73.38 ATOM 38 CA THR F 259 52.242 19.642 298.202 1.00 56.50 ATOM 39 CA LYS F 260 53.274 16.262 299.699 1.00 70.07 ATOM 40 CA TYR F 261 51.979 16.924 303.180 1.00 59.46 ATOM 41 CA LEU F 262 51.144 19.376 305.947 1.00 56.63 ATOM 42 CA ALA F 263 52.764 19.305 309.388 1.00 57.25 ATOM 43 CA TRP F 264 51.760 21.459 312.314 1.00 52.55 ATOM 44 CA ASN F 265 52.201 21.954 316.051 1.00 51.99 ATOM 45 CA PHE F 266 50.926 24.193 318.854 1.00 44.23 ATOM 46 CA ASN F 267 53.891 25.510 320.814 1.00 81.13 ATOM 47 CA ASN F 268 54.505 27.585 323.947 1.00 96.30 ATOM 48 CA PRO F 269 56.800 30.364 322.633 1.00 94.44 ATOM 49 CA THR F 270 58.520 30.604 326.031 1.00 56.98 ATOM 50 CA ASN F 271 59.871 27.051 325.775 1.00 71.76 ATOM 51 CA TYR F 272 61.619 25.830 322.619 1.00 86.33 ATOM 52 CA GLY F 273 60.144 22.473 321.615 1.00 96.42 ATOM 53 CA GLN F 274 57.226 22.551 324.047 1.00 93.56 ATOM 54 CA TYR F 275 54.315 21.239 322.016 1.00 76.57 ATOM 55 CA THR F 276 52.545 19.771 325.038 1.00 63.06 ATOM 56 CA ALA F 277 50.987 21.125 328.271 1.00 64.67 ATOM 57 CA LEU F 278 53.174 21.097 331.386 1.00 56.94 ATOM 58 CA ALA F 279 51.871 18.863 334.165 1.00 62.65 ATOM 59 CA ASN F 280 52.765 17.488 337.571 1.00 74.36 ATOM 60 CA ILE F 281 53.710 14.172 335.992 1.00 75.00 ATOM 61 CA PRO F 282 57.230 12.681 335.872 1.00 64.24 ATOM 62 CA GLY F 283 59.006 14.308 332.944 1.00 49.34 ATOM 63 CA ALA F 284 56.148 16.728 332.331 1.00 49.34 ATOM 64 CA CYS F 285 57.468 19.638 334.436 1.00 43.90 ATOM 65 CA SER F 286 60.371 20.839 336.559 1.00 50.04 ATOM 66 CA GLY F 287 60.543 18.837 339.791 1.00 61.17 ATOM 67 CA ALA F 288 57.505 16.806 338.737 1.00 62.81 ATOM 68 CA GLY F 289 56.448 14.125 341.194 1.00 89.11 ATOM 69 CA THR F 290 57.975 15.926 344.139 1.00 99.27 ATOM 70 CA ALA F 291 57.572 18.826 346.583 1.00110.81 ATOM 71 CA ALA F 292 59.579 21.040 344.224 1.00 90.11 ATOM 72 CA ALA F 293 57.146 20.359 341.371 1.00 71.01 ATOM 73 CA THR F 294 56.347 23.467 339.305 1.00 61.50 ATOM 74 CA VAL F 295 53.890 23.399 336.395 1.00 65.85 ATOM 75 CA THR F 296 55.396 26.763 335.421 1.00 79.02 ATOM 76 CA THR F 297 58.679 25.291 334.177 1.00 57.79 ATOM 77 CA PRO F 298 59.250 22.325 331.848 1.00 53.33 ATOM 78 CA ASP F 299 61.626 19.430 332.546 1.00 59.70 ATOM 79 CA TYR F 300 63.905 20.793 329.807 1.00 57.67 ATOM 80 CA GLY F 301 65.766 17.563 329.208 1.00 57.53 ATOM 81 CA ASN F 302 62.414 15.865 328.710 1.00 61.08 ATOM 82 CA THR F 303 60.302 18.523 326.983 1.00 71.98 ATOM 83 CA GLY F 304 58.664 15.956 324.705 1.00 81.84 ATOM 84 CA THR F 305 55.945 13.385 325.510 1.00 86.75 ATOM 85 CA TYR F 306 53.935 10.610 323.898 1.00 92.70 ATOM 86 CA ASN F 307 51.016 11.250 326.251 1.00 76.46 ATOM 87 CA GLU F 308 48.093 12.529 324.145 1.00 53.03 ATOM 88 CA GLN F 309 46.379 13.578 327.379 1.00 63.09 ATOM 89 CA LEU F 310 48.723 16.571 327.300 1.00 60.11 ATOM 90 CA ALA F 311 48.073 17.686 323.688 1.00 59.65 ATOM 91 CA VAL F 312 45.423 20.387 322.999 1.00 66.64 ATOM 92 CA LEU F 313 43.967 19.597 319.594 1.00 72.99 ATOM 93 CA ASP F 314 40.670 17.723 320.014 1.00 76.15 ATOM 94 CA SER F 315 39.677 17.358 316.364 1.00 67.58 ATOM 95 CA ALA F 316 40.597 18.764 312.971 1.00 66.07 ATOM 96 CA LYS F 317 39.819 18.773 309.267 1.00 68.63 ATOM 97 CA ILE F 318 40.949 20.577 306.135 1.00 91.04 ATOM 98 CA GLN F 319 38.620 22.271 303.665 1.00 55.40 ATOM 99 CA LEU F 320 39.035 23.028 299.970 1.00 40.99 ATOM 100 CA ASN F 321 36.915 25.909 298.754 1.00 46.80 ATOM 101 CA GLY F 322 34.520 25.440 301.671 1.00 68.38 ATOM 102 CA GLN F 323 34.277 21.755 300.819 1.00 57.19 ATOM 103 CA ASP F 324 35.488 19.170 303.349 1.00 56.95 ATOM 104 CA ARG F 325 38.675 17.463 302.137 1.00 76.30 ATOM 105 CA PHE F 326 37.862 14.774 304.669 1.00 77.31 ATOM 106 CA ALA F 327 35.656 14.126 307.687 1.00 70.08 ATOM 107 CA THR F 328 36.768 15.361 311.113 1.00 74.24 ATOM 108 CA ARG F 329 39.224 13.200 313.021 1.00 74.71 ATOM 109 CA LYS F 330 40.566 13.569 316.567 1.00 85.70 ATOM 110 CA GLY F 331 43.998 15.064 317.144 1.00 79.68 ATOM 111 CA SER F 332 45.359 11.618 318.031 1.00 49.27 ATOM 112 CA TYR F 333 44.632 10.478 314.452 1.00 55.63 ATOM 113 CA PHE F 334 47.035 12.972 312.869 1.00 64.95 ATOM 114 CA ASN F 335 49.617 12.203 315.586 1.00 49.83 ATOM 115 CA LYS F 336 49.428 8.396 315.623 1.00 31.85 ATOM 116 CA VAL F 337 47.598 7.078 312.510 1.00 38.62 ATOM 117 CA GLN F 338 48.739 9.394 309.703 1.00 30.59 ATOM 118 CA PRO F 339 52.389 8.761 310.722 1.00 45.53 ATOM 119 CA TYR F 340 51.896 5.007 311.284 1.00 49.88 ATOM 120 CA GLN F 341 50.380 4.703 307.798 1.00 52.15 ATOM 121 CA SER F 342 52.933 6.804 305.903 1.00 68.25 ATOM 122 CA ILE F 343 56.086 7.059 308.029 1.00 71.84 ATOM 123 CA GLY F 344 56.378 4.050 310.314 1.00 76.87 ATOM 124 CA GLY F 345 58.067 5.613 313.326 1.00 74.35 ATOM 125 CA VAL F 346 56.605 7.268 316.417 1.00 73.45 ATOM 126 CA THR F 347 55.762 10.944 316.806 1.00 66.09 ATOM 127 CA PRO F 348 55.540 12.667 320.210 1.00 83.66 ATOM 128 CA ALA F 349 52.182 14.148 321.169 1.00 69.46 ATOM 129 CA GLY F 350 51.747 17.702 319.902 1.00 68.16 ATOM 130 CA VAL F 351 52.953 17.069 316.362 1.00 76.22 ATOM 131 CA TYR F 352 50.403 16.446 313.623 1.00 82.53 ATOM 132 CA LEU F 353 50.668 15.285 310.057 1.00 65.09 ATOM 133 CA TYR F 354 48.328 14.920 307.125 1.00 71.14 ATOM 134 CA SER F 355 49.878 13.410 304.040 1.00 70.26 ATOM 135 CA PHE F 356 48.787 13.796 300.430 1.00 77.73 ATOM 136 CA ALA F 357 51.443 11.201 299.548 1.00 90.72 ATOM 137 CA LEU F 358 51.804 7.454 300.021 1.00 85.91 ATOM 138 CA LYS F 359 55.402 7.892 301.235 1.00 94.89 ATOM 139 CA PRO F 360 55.971 11.478 302.508 1.00 81.38 ATOM 140 CA ALA F 361 59.482 10.650 303.670 1.00 67.47 ATOM 141 CA GLY F 362 60.418 9.452 300.191 1.00 64.84 ATOM 142 CA ARG F 363 62.128 11.724 297.665 1.00 65.83 ATOM 143 CA GLN F 364 60.308 10.221 294.684 1.00 71.88 ATOM 144 CA PRO F 365 56.774 11.699 294.331 1.00 90.95 ATOM 145 CA SER F 366 53.894 9.459 295.399 1.00 89.36 ATOM 146 CA GLY F 367 50.894 11.657 295.993 1.00 86.44 ATOM 147 CA THR F 368 50.546 15.416 295.816 1.00 76.29 ATOM 148 CA CYS F 369 48.018 18.245 296.068 1.00 74.83 ATOM 149 CA ASN F 370 48.344 21.459 294.070 1.00 80.06 ATOM 150 CA PHE F 371 47.708 24.456 296.317 1.00 88.12 ATOM 151 CA SER F 372 48.410 26.777 293.397 1.00 69.28 ATOM 152 CA ARG F 373 44.967 25.709 292.275 1.00 60.51 ATOM 153 CA ILE F 374 43.014 25.858 295.538 1.00 52.81 ATOM 154 CA ASP F 375 41.596 29.347 295.922 1.00 38.42 ATOM 155 CA ASN F 376 40.718 28.628 299.535 1.00 49.92 ATOM 156 CA ALA F 377 42.532 26.184 301.808 1.00 83.57 ATOM 157 CA THR F 378 41.525 26.228 305.482 1.00 83.25 ATOM 158 CA LEU F 379 42.388 24.229 308.594 1.00 90.45 ATOM 159 CA SER F 380 39.399 23.887 310.918 1.00 50.27 ATOM 160 CA LEU F 381 40.579 23.359 314.504 1.00 56.51 ATOM 161 CA THR F 382 38.658 22.528 317.657 1.00 45.95 ATOM 162 CA TYR F 383 40.523 22.416 320.945 1.00 60.75 ATOM 163 CA LYS F 384 39.909 20.329 324.055 1.00 71.32 ATOM 164 CA THR F 385 38.570 22.017 327.176 1.00 62.76 ATOM 165 CA CYS F 386 41.633 22.659 329.329 1.00 47.34 ATOM 166 CA SER F 387 39.945 21.915 332.647 1.00 71.10 ATOM 167 CA ILE F 388 42.288 19.331 334.190 1.00 74.81 ATOM 168 CA ASP F 389 44.260 20.527 337.204 1.00 77.14 ATOM 169 CA ALA F 390 47.840 20.387 335.905 1.00 66.25 ATOM 170 CA THR F 391 49.351 20.082 339.404 1.00 84.41 ATOM 171 CA SER F 392 47.410 16.900 340.191 1.00 83.91 ATOM 172 CA PRO F 393 48.861 13.508 339.083 1.00 71.95 ATOM 173 CA ALA F 394 45.597 11.675 339.826 1.00 44.69 ATOM 174 CA ALA F 395 43.651 14.058 337.598 1.00 59.66 ATOM 175 CA VAL F 396 46.061 14.084 334.630 1.00 53.54 ATOM 176 CA LEU F 397 46.579 10.289 334.621 1.00 51.46 ATOM 177 CA GLY F 398 42.898 9.419 335.015 1.00 55.64 ATOM 178 CA ASN F 399 40.924 11.611 332.626 1.00 73.43 ATOM 179 CA THR F 400 38.701 11.907 329.537 1.00 99.84 ATOM 180 CA GLU F 401 39.601 12.200 325.829 1.00114.69 ATOM 181 CA THR F 402 38.218 15.707 325.340 1.00118.34 ATOM 182 CA VAL F 403 40.101 17.584 328.066 1.00 95.19 ATOM 183 CA THR F 404 43.698 18.585 328.866 1.00 66.44 ATOM 184 CA ALA F 405 45.425 20.436 331.695 1.00 51.81 ATOM 185 CA ASN F 406 44.730 24.188 332.070 1.00 46.54 ATOM 186 CA THR F 407 48.419 24.571 331.379 1.00 64.80 ATOM 187 CA ALA F 408 47.395 24.092 327.730 1.00 73.64 ATOM 188 CA THR F 409 46.500 27.796 327.469 1.00 83.33 ATOM 189 CA LEU F 410 50.163 28.673 326.924 1.00 96.35 ATOM 190 CA LEU F 411 50.367 26.693 323.672 1.00 81.33 ATOM 191 CA THR F 412 49.468 29.685 321.484 1.00 66.63 ATOM 192 CA ALA F 413 51.970 29.494 318.637 1.00 63.63 ATOM 193 CA LEU F 414 50.396 27.512 315.785 1.00 41.59 ATOM 194 CA ASN F 415 53.103 26.488 313.327 1.00 53.77 ATOM 195 CA ILE F 416 51.884 25.011 310.057 1.00 42.14 ATOM 196 CA TYR F 417 54.332 23.589 307.532 1.00 73.32 ATOM 197 CA ALA F 418 53.872 22.389 303.968 1.00 65.19 ATOM 198 CA LYS F 419 56.537 20.580 301.966 1.00 75.17 ATOM 199 CA ASN F 420 56.215 20.989 298.228 1.00 57.77 ATOM 200 CA TYR F 421 57.847 20.053 294.951 1.00 77.50 ATOM 201 CA ASN F 422 59.319 22.481 292.436 1.00 64.17 ATOM 202 CA VAL F 423 61.701 22.320 289.502 1.00 58.83 ATOM 203 CA LEU F 424 65.220 23.741 289.453 1.00 44.66 ATOM 204 CA ARG F 425 66.421 24.234 285.858 1.00 51.98 ATOM 205 CA ILE F 426 70.147 24.771 285.289 1.00 45.62 ATOM 206 CA MET F 427 71.698 25.857 282.016 1.00 49.55 ATOM 207 CA SER F 428 74.237 28.236 280.507 1.00 68.32 ATOM 208 CA GLY F 429 75.971 28.708 283.837 1.00 60.88 ATOM 209 CA MET F 430 72.956 29.641 285.921 1.00 56.55 ATOM 210 CA GLY F 431 69.868 28.213 287.588 1.00 52.49 ATOM 211 CA GLY F 432 66.373 29.184 288.636 1.00 49.99 ATOM 212 CA LEU F 433 63.132 27.754 289.935 1.00 59.77 ATOM 213 CA ALA F 434 60.532 26.857 287.322 1.00 68.08 ATOM 214 CA TYR F 435 57.658 28.005 289.523 1.00 75.99 ATOM 215 CA ALA F 436 57.189 30.945 291.861 1.00 88.27 ATOM 216 CA ASN F 437 54.641 31.458 294.668 1.00 85.68 TER