HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 G 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 G 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 G 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 G 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 G 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 G 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 G 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 G 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 G 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 G 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 G 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 G 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 G 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 G 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 G 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 G 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 G 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 G 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU G 222 39.933 -5.064 281.997 1.00 64.74 ATOM 2 CA PRO G 223 40.181 -8.349 283.950 1.00 59.59 ATOM 3 CA HIS G 224 42.386 -8.257 287.061 1.00 59.16 ATOM 4 CA GLU G 225 44.497 -10.851 288.840 1.00 56.38 ATOM 5 CA TYR G 226 45.931 -10.046 292.247 1.00 50.58 ATOM 6 CA LEU G 227 48.451 -12.237 294.007 1.00 68.53 ATOM 7 CA ILE G 228 47.315 -11.906 297.622 1.00 67.89 ATOM 8 CA GLU G 229 48.076 -13.524 300.949 1.00 67.97 ATOM 9 CA GLN G 230 45.877 -15.306 303.448 1.00 61.56 ATOM 10 CA LEU G 231 46.093 -16.519 307.007 1.00 98.86 ATOM 11 CA GLN G 232 45.474 -20.111 308.115 1.00 83.82 ATOM 12 CA PHE G 233 44.866 -21.278 311.689 1.00 68.13 ATOM 13 CA THR G 234 43.669 -24.064 314.076 1.00 58.88 ATOM 14 CA GLY G 235 43.768 -24.301 317.921 1.00 68.80 ATOM 15 CA SER G 236 45.713 -27.225 319.492 1.00 57.01 ATOM 16 CA GLU G 237 46.349 -28.397 323.071 1.00 56.19 ATOM 17 CA THR G 238 49.888 -28.434 324.465 1.00 57.16 ATOM 18 CA ALA G 239 51.023 -30.997 327.024 1.00 62.07 ATOM 19 CA THR G 240 54.189 -29.855 328.819 1.00 68.84 ATOM 20 CA PRO G 241 55.937 -32.321 331.256 1.00 56.65 ATOM 21 CA SER G 242 55.395 -31.243 334.825 1.00 52.69 ATOM 22 CA ALA G 243 58.811 -32.690 335.683 1.00 71.57 ATOM 23 CA THR G 244 61.040 -35.772 335.660 1.00106.84 ATOM 24 CA THR G 245 60.082 -35.930 331.977 1.00 97.56 ATOM 25 CA GLN G 246 60.199 -33.990 328.714 1.00 71.30 ATOM 26 CA ALA G 247 56.859 -34.457 326.954 1.00 59.63 ATOM 27 CA SER G 248 56.549 -34.515 323.166 1.00 50.37 ATOM 28 CA GLN G 249 53.919 -34.321 320.435 1.00 55.97 ATOM 29 CA ASN G 250 53.328 -34.431 316.697 1.00 62.85 ATOM 30 CA ILE G 251 50.770 -31.894 315.573 1.00 70.87 ATOM 31 CA ARG G 252 49.538 -32.940 312.141 1.00 76.03 ATOM 32 CA LEU G 253 49.369 -29.621 310.271 1.00102.90 ATOM 33 CA ASN G 254 46.388 -29.085 307.962 1.00 83.00 ATOM 34 CA PHE G 255 47.480 -26.296 305.634 1.00 71.82 ATOM 35 CA ASN G 256 47.315 -25.708 301.877 1.00 55.68 ATOM 36 CA HIS G 257 48.574 -23.541 299.005 1.00 50.62 ATOM 37 CA PRO G 258 52.074 -22.027 298.533 1.00 66.50 ATOM 38 CA THR G 259 53.088 -21.079 302.102 1.00 54.78 ATOM 39 CA LYS G 260 55.640 -18.353 302.987 1.00 75.07 ATOM 40 CA TYR G 261 56.093 -19.348 306.596 1.00 58.71 ATOM 41 CA LEU G 262 54.701 -20.906 309.760 1.00 62.52 ATOM 42 CA ALA G 263 54.326 -19.031 313.043 1.00 58.09 ATOM 43 CA TRP G 264 53.290 -20.569 316.327 1.00 61.66 ATOM 44 CA ASN G 265 53.048 -19.951 320.066 1.00 66.91 ATOM 45 CA PHE G 266 52.062 -21.781 323.253 1.00 51.03 ATOM 46 CA ASN G 267 49.662 -19.610 325.224 1.00 64.28 ATOM 47 CA ASN G 268 47.911 -19.685 328.601 1.00 75.78 ATOM 48 CA PRO G 269 44.232 -19.223 327.612 1.00 79.55 ATOM 49 CA THR G 270 43.536 -17.414 330.900 1.00 68.00 ATOM 50 CA ASN G 271 45.886 -14.550 330.009 1.00 85.46 ATOM 51 CA TYR G 272 45.721 -12.850 326.606 1.00 92.95 ATOM 52 CA GLY G 273 49.233 -12.623 325.172 1.00 83.58 ATOM 53 CA GLN G 274 50.888 -14.871 327.752 1.00 83.75 ATOM 54 CA TYR G 275 53.249 -17.010 325.709 1.00 73.58 ATOM 55 CA THR G 276 55.725 -17.438 328.563 1.00 69.91 ATOM 56 CA ALA G 277 55.684 -19.029 332.051 1.00 72.09 ATOM 57 CA LEU G 278 54.955 -16.725 334.992 1.00 60.87 ATOM 58 CA ALA G 279 57.825 -16.408 337.455 1.00 49.18 ATOM 59 CA ASN G 280 58.929 -14.529 340.543 1.00 64.45 ATOM 60 CA ILE G 281 61.137 -12.304 338.409 1.00 72.23 ATOM 61 CA PRO G 282 60.646 -8.552 337.856 1.00 74.20 ATOM 62 CA GLY G 283 58.044 -8.183 335.123 1.00 57.20 ATOM 63 CA ALA G 284 57.328 -11.911 335.066 1.00 52.60 ATOM 64 CA CYS G 285 54.392 -11.915 337.521 1.00 41.26 ATOM 65 CA SER G 286 52.139 -9.717 339.636 1.00 50.95 ATOM 66 CA GLY G 287 54.121 -8.181 342.494 1.00 68.12 ATOM 67 CA ALA G 288 57.270 -9.954 341.314 1.00 77.25 ATOM 68 CA GLY G 289 60.370 -9.248 343.371 1.00 95.38 ATOM 69 CA THR G 290 58.377 -8.425 346.473 1.00102.33 ATOM 70 CA ALA G 291 56.348 -9.871 349.360 1.00111.19 ATOM 71 CA ALA G 292 53.189 -9.514 347.271 1.00 90.01 ATOM 72 CA ALA G 293 54.680 -11.652 344.491 1.00 83.69 ATOM 73 CA THR G 294 52.186 -14.120 342.988 1.00 70.44 ATOM 74 CA VAL G 295 53.155 -16.583 340.251 1.00 62.27 ATOM 75 CA THR G 296 49.411 -17.044 339.735 1.00 84.23 ATOM 76 CA THR G 297 48.900 -13.649 338.087 1.00 66.34 ATOM 77 CA PRO G 298 50.912 -12.012 335.290 1.00 54.25 ATOM 78 CA ASP G 299 52.289 -8.461 335.382 1.00 47.96 ATOM 79 CA TYR G 300 49.682 -7.505 332.767 1.00 59.46 ATOM 80 CA GLY G 301 51.466 -4.401 331.559 1.00 56.81 ATOM 81 CA ASN G 302 54.549 -6.537 330.995 1.00 62.48 ATOM 82 CA THR G 303 53.130 -9.877 329.834 1.00 70.06 ATOM 83 CA GLY G 304 55.908 -10.338 327.280 1.00 83.24 ATOM 84 CA THR G 305 59.564 -11.333 327.827 1.00 80.45 ATOM 85 CA TYR G 306 62.780 -11.931 325.915 1.00 75.79 ATOM 86 CA ASN G 307 63.943 -14.459 328.504 1.00 66.74 ATOM 87 CA GLU G 308 64.073 -17.879 326.797 1.00 58.75 ATOM 88 CA GLN G 309 64.378 -19.459 330.251 1.00 76.29 ATOM 89 CA LEU G 310 60.627 -18.897 330.508 1.00 66.49 ATOM 90 CA ALA G 311 59.602 -20.462 327.160 1.00 61.40 ATOM 91 CA VAL G 312 58.530 -24.156 327.058 1.00 58.55 ATOM 92 CA LEU G 313 59.569 -25.465 323.664 1.00 67.63 ATOM 93 CA ASP G 314 62.872 -27.349 323.973 1.00 68.63 ATOM 94 CA SER G 315 63.288 -28.499 320.374 1.00 68.57 ATOM 95 CA ALA G 316 61.254 -28.824 317.197 1.00 78.66 ATOM 96 CA LYS G 317 61.237 -29.976 313.588 1.00 78.87 ATOM 97 CA ILE G 318 58.783 -30.276 310.722 1.00 91.84 ATOM 98 CA GLN G 319 58.222 -33.434 308.689 1.00 56.10 ATOM 99 CA LEU G 320 56.963 -33.915 305.142 1.00 48.83 ATOM 100 CA ASN G 321 55.418 -37.304 304.519 1.00 46.83 ATOM 101 CA GLY G 322 57.335 -38.772 307.457 1.00 62.26 ATOM 102 CA GLN G 323 60.530 -37.299 306.053 1.00 64.25 ATOM 103 CA ASP G 324 62.421 -34.670 308.069 1.00 61.52 ATOM 104 CA ARG G 325 62.162 -31.242 306.423 1.00 70.58 ATOM 105 CA PHE G 326 65.154 -30.313 308.542 1.00 70.74 ATOM 106 CA ALA G 327 67.136 -31.515 311.543 1.00 57.78 ATOM 107 CA THR G 328 65.891 -30.718 315.053 1.00 56.32 ATOM 108 CA ARG G 329 66.727 -27.297 316.450 1.00 59.74 ATOM 109 CA LYS G 330 66.123 -25.864 319.927 1.00 71.42 ATOM 110 CA GLY G 331 63.185 -23.550 320.530 1.00 75.76 ATOM 111 CA SER G 332 65.564 -20.585 320.785 1.00 47.23 ATOM 112 CA TYR G 333 66.520 -21.117 317.119 1.00 41.26 ATOM 113 CA PHE G 334 63.003 -20.454 315.813 1.00 65.76 ATOM 114 CA ASN G 335 62.671 -17.502 318.221 1.00 56.85 ATOM 115 CA LYS G 336 66.041 -15.809 317.669 1.00 39.15 ATOM 116 CA VAL G 337 67.752 -17.150 314.498 1.00 34.78 ATOM 117 CA GLN G 338 64.891 -17.649 312.029 1.00 34.04 ATOM 118 CA PRO G 339 63.719 -14.055 312.723 1.00 44.01 ATOM 119 CA TYR G 340 67.249 -12.584 312.715 1.00 51.97 ATOM 120 CA GLN G 341 67.892 -14.193 309.315 1.00 63.83 ATOM 121 CA SER G 342 64.610 -13.252 307.633 1.00 80.20 ATOM 122 CA ILE G 343 63.044 -10.376 309.589 1.00 79.70 ATOM 123 CA GLY G 344 65.729 -8.368 311.351 1.00 80.68 ATOM 124 CA GLY G 345 63.871 -7.283 314.466 1.00 69.28 ATOM 125 CA VAL G 346 63.512 -8.954 317.862 1.00 62.05 ATOM 126 CA THR G 347 60.813 -11.421 318.868 1.00 51.15 ATOM 127 CA PRO G 348 59.810 -12.016 322.507 1.00 69.50 ATOM 128 CA ALA G 349 60.321 -15.514 323.884 1.00 66.56 ATOM 129 CA GLY G 350 57.347 -17.782 323.218 1.00 77.46 ATOM 130 CA VAL G 351 56.903 -16.885 319.559 1.00 80.69 ATOM 131 CA TYR G 352 58.420 -19.137 316.907 1.00 92.05 ATOM 132 CA LEU G 353 58.900 -18.801 313.195 1.00 73.14 ATOM 133 CA TYR G 354 60.066 -21.021 310.382 1.00 88.36 ATOM 134 CA SER G 355 60.255 -19.344 307.011 1.00 79.56 ATOM 135 CA PHE G 356 60.078 -20.939 303.577 1.00 85.21 ATOM 136 CA ALA G 357 60.888 -17.494 302.149 1.00 97.28 ATOM 137 CA LEU G 358 63.979 -15.301 302.003 1.00 82.05 ATOM 138 CA LYS G 359 61.935 -12.243 303.059 1.00 83.48 ATOM 139 CA PRO G 360 58.709 -13.335 304.848 1.00 84.60 ATOM 140 CA ALA G 361 57.792 -9.749 305.659 1.00 66.81 ATOM 141 CA GLY G 362 57.976 -8.805 301.985 1.00 57.71 ATOM 142 CA ARG G 363 54.896 -8.752 299.756 1.00 67.75 ATOM 143 CA GLN G 364 56.778 -9.978 296.685 1.00 62.26 ATOM 144 CA PRO G 365 57.233 -13.797 296.774 1.00 89.88 ATOM 145 CA SER G 366 60.713 -15.057 297.642 1.00 86.93 ATOM 146 CA GLY G 367 60.387 -18.645 298.744 1.00 97.25 ATOM 147 CA THR G 368 57.309 -20.796 299.184 1.00 93.54 ATOM 148 CA CYS G 369 56.168 -24.325 300.021 1.00 79.09 ATOM 149 CA ASN G 370 53.029 -25.863 298.542 1.00 72.62 ATOM 150 CA PHE G 371 51.011 -27.581 301.263 1.00 59.56 ATOM 151 CA SER G 372 48.349 -28.477 298.707 1.00 52.56 ATOM 152 CA ARG G 373 50.870 -31.078 297.633 1.00 68.14 ATOM 153 CA ILE G 374 52.067 -32.422 300.986 1.00 52.82 ATOM 154 CA ASP G 375 49.818 -35.292 301.996 1.00 47.09 ATOM 155 CA ASN G 376 51.264 -35.239 305.495 1.00 48.46 ATOM 156 CA ALA G 377 52.704 -32.189 307.247 1.00 75.69 ATOM 157 CA THR G 378 53.567 -32.610 310.935 1.00 79.98 ATOM 158 CA LEU G 379 55.189 -30.495 313.640 1.00 98.62 ATOM 159 CA SER G 380 57.226 -32.614 316.048 1.00 64.89 ATOM 160 CA LEU G 381 57.478 -30.878 319.431 1.00 66.22 ATOM 161 CA THR G 382 59.494 -31.727 322.521 1.00 47.92 ATOM 162 CA TYR G 383 59.015 -29.642 325.636 1.00 50.37 ATOM 163 CA LYS G 384 61.451 -28.758 328.411 1.00 51.58 ATOM 164 CA THR G 385 61.005 -30.336 331.829 1.00 61.05 ATOM 165 CA CYS G 386 59.153 -27.724 333.877 1.00 47.30 ATOM 166 CA SER G 387 60.997 -28.394 337.126 1.00 72.63 ATOM 167 CA ILE G 388 62.215 -24.917 338.107 1.00 78.26 ATOM 168 CA ASP G 389 60.526 -23.404 341.153 1.00 77.10 ATOM 169 CA ALA G 390 58.717 -20.411 339.642 1.00 54.97 ATOM 170 CA THR G 391 58.603 -18.507 342.954 1.00 73.43 ATOM 171 CA SER G 392 62.392 -18.536 343.344 1.00 76.42 ATOM 172 CA PRO G 393 64.464 -15.777 341.635 1.00 54.31 ATOM 173 CA ALA G 394 67.749 -17.609 342.269 1.00 56.21 ATOM 174 CA ALA G 395 66.431 -20.738 340.555 1.00 73.55 ATOM 175 CA VAL G 396 64.885 -19.048 337.495 1.00 61.88 ATOM 176 CA LEU G 397 67.886 -16.754 336.857 1.00 57.34 ATOM 177 CA GLY G 398 70.515 -19.463 337.326 1.00 72.57 ATOM 178 CA ASN G 399 69.362 -22.541 335.428 1.00 86.49 ATOM 179 CA THR G 400 69.885 -25.000 332.558 1.00107.55 ATOM 180 CA GLU G 401 68.783 -24.842 328.896 1.00116.81 ATOM 181 CA THR G 402 66.404 -27.807 329.046 1.00109.92 ATOM 182 CA VAL G 403 64.147 -26.744 331.922 1.00 89.02 ATOM 183 CA THR G 404 61.574 -24.020 332.660 1.00 66.20 ATOM 184 CA ALA G 405 59.429 -23.063 335.639 1.00 54.30 ATOM 185 CA ASN G 406 56.591 -25.439 336.641 1.00 35.88 ATOM 186 CA THR G 407 54.342 -22.526 335.806 1.00 54.75 ATOM 187 CA ALA G 408 54.873 -23.646 332.191 1.00 63.08 ATOM 188 CA THR G 409 52.106 -26.252 332.569 1.00 62.57 ATOM 189 CA LEU G 410 49.465 -23.583 331.959 1.00 78.71 ATOM 190 CA LEU G 411 50.714 -22.864 328.432 1.00 62.93 ATOM 191 CA THR G 412 48.353 -25.374 326.797 1.00 55.64 ATOM 192 CA ALA G 413 46.959 -23.484 323.816 1.00 53.87 ATOM 193 CA LEU G 414 49.142 -24.245 320.780 1.00 44.44 ATOM 194 CA ASN G 415 48.407 -21.725 318.040 1.00 48.77 ATOM 195 CA ILE G 416 49.930 -22.481 314.654 1.00 45.15 ATOM 196 CA TYR G 417 49.655 -19.997 311.800 1.00 73.49 ATOM 197 CA ALA G 418 50.535 -20.267 308.124 1.00 67.38 ATOM 198 CA LYS G 419 50.543 -17.341 305.712 1.00 69.42 ATOM 199 CA ASN G 420 49.950 -18.298 302.111 1.00 56.73 ATOM 200 CA TYR G 421 49.583 -16.852 298.637 1.00 76.31 ATOM 201 CA ASN G 422 46.491 -17.085 296.456 1.00 58.08 ATOM 202 CA VAL G 423 45.121 -15.322 293.399 1.00 50.17 ATOM 203 CA LEU G 424 42.137 -12.978 293.371 1.00 29.10 ATOM 204 CA ARG G 425 40.725 -12.642 289.836 1.00 43.26 ATOM 205 CA ILE G 426 38.340 -9.753 289.142 1.00 39.87 ATOM 206 CA MET G 427 36.280 -9.361 285.999 1.00 46.26 ATOM 207 CA SER G 428 32.802 -8.517 284.742 1.00 66.99 ATOM 208 CA GLY G 429 31.890 -6.823 288.000 1.00 59.55 ATOM 209 CA MET G 430 32.821 -9.614 290.371 1.00 45.86 ATOM 210 CA GLY G 431 35.771 -11.373 291.968 1.00 57.50 ATOM 211 CA GLY G 432 36.795 -14.731 293.360 1.00 67.18 ATOM 212 CA LEU G 433 39.781 -16.671 294.599 1.00 54.17 ATOM 213 CA ALA G 434 41.569 -18.819 292.032 1.00 58.80 ATOM 214 CA TYR G 435 42.260 -21.578 294.549 1.00 64.88 ATOM 215 CA ALA G 436 40.219 -23.112 297.346 1.00 87.86 ATOM 216 CA ASN G 437 41.353 -25.206 300.338 1.00101.26 TER