HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 H 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 H 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 H 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 H 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 H 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 H 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 H 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 H 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 H 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 H 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 H 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 H 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 H 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 H 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 H 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 H 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 H 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 H 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU H 222 86.563 -61.200 272.679 1.00 71.56 ATOM 2 CA PRO H 223 86.357 -58.532 275.424 1.00 64.62 ATOM 3 CA HIS H 224 84.351 -59.495 278.516 1.00 62.36 ATOM 4 CA GLU H 225 82.293 -57.522 281.008 1.00 65.60 ATOM 5 CA TYR H 226 81.087 -59.225 284.168 1.00 67.15 ATOM 6 CA LEU H 227 78.635 -57.651 286.563 1.00 71.11 ATOM 7 CA ILE H 228 79.993 -58.850 289.905 1.00 71.31 ATOM 8 CA GLU H 229 79.400 -58.159 293.574 1.00 69.69 ATOM 9 CA GLN H 230 81.704 -56.991 296.328 1.00 56.88 ATOM 10 CA LEU H 231 81.679 -56.735 300.082 1.00 70.94 ATOM 11 CA GLN H 232 82.282 -53.521 302.040 1.00 63.82 ATOM 12 CA PHE H 233 83.081 -53.281 305.757 1.00 69.30 ATOM 13 CA THR H 234 84.357 -51.151 308.710 1.00 57.24 ATOM 14 CA GLY H 235 84.487 -51.904 312.487 1.00 52.69 ATOM 15 CA SER H 236 82.575 -49.553 314.857 1.00 51.47 ATOM 16 CA GLU H 237 82.131 -49.356 318.645 1.00 58.21 ATOM 17 CA THR H 238 78.686 -49.810 320.190 1.00 59.80 ATOM 18 CA ALA H 239 77.650 -48.029 323.375 1.00 52.71 ATOM 19 CA THR H 240 74.626 -49.707 324.983 1.00 53.73 ATOM 20 CA PRO H 241 72.975 -48.009 328.058 1.00 53.63 ATOM 21 CA SER H 242 73.756 -49.944 331.198 1.00 54.65 ATOM 22 CA ALA H 243 70.369 -48.890 332.580 1.00 75.26 ATOM 23 CA THR H 244 68.072 -45.991 333.465 1.00104.53 ATOM 24 CA THR H 245 68.799 -44.864 329.902 1.00 98.75 ATOM 25 CA GLN H 246 68.529 -45.912 326.262 1.00 77.50 ATOM 26 CA ALA H 247 71.742 -44.887 324.504 1.00 54.25 ATOM 27 CA SER H 248 71.816 -43.854 320.847 1.00 48.19 ATOM 28 CA GLN H 249 74.279 -43.246 318.020 1.00 47.06 ATOM 29 CA ASN H 250 74.639 -42.165 314.411 1.00 55.58 ATOM 30 CA ILE H 251 77.181 -44.236 312.541 1.00 79.45 ATOM 31 CA ARG H 252 78.178 -42.303 309.430 1.00 78.58 ATOM 32 CA LEU H 253 78.308 -45.030 306.767 1.00106.37 ATOM 33 CA ASN H 254 81.154 -44.844 304.242 1.00 82.44 ATOM 34 CA PHE H 255 79.987 -46.987 301.335 1.00 66.88 ATOM 35 CA ASN H 256 79.935 -46.594 297.552 1.00 47.74 ATOM 36 CA HIS H 257 78.554 -48.004 294.292 1.00 56.88 ATOM 37 CA PRO H 258 75.068 -49.479 293.635 1.00 84.20 ATOM 38 CA THR H 259 74.294 -51.341 296.889 1.00 69.63 ATOM 39 CA LYS H 260 71.865 -54.300 297.179 1.00 89.07 ATOM 40 CA TYR H 261 71.612 -54.276 300.941 1.00 73.85 ATOM 41 CA LEU H 262 73.155 -53.521 304.322 1.00 70.82 ATOM 42 CA ALA H 263 73.776 -56.155 306.991 1.00 65.24 ATOM 43 CA TRP H 264 74.973 -55.467 310.498 1.00 56.36 ATOM 44 CA ASN H 265 75.458 -57.006 313.934 1.00 57.06 ATOM 45 CA PHE H 266 76.595 -56.012 317.427 1.00 48.78 ATOM 46 CA ASN H 267 79.159 -58.525 318.643 1.00 61.14 ATOM 47 CA ASN H 268 81.112 -59.240 321.831 1.00 78.71 ATOM 48 CA PRO H 269 84.732 -59.299 320.564 1.00 96.24 ATOM 49 CA THR H 270 85.671 -61.853 323.236 1.00 85.18 ATOM 50 CA ASN H 271 83.336 -64.485 321.767 1.00 97.57 ATOM 51 CA TYR H 272 83.332 -65.254 318.037 1.00 86.54 ATOM 52 CA GLY H 273 79.744 -65.242 316.782 1.00 76.71 ATOM 53 CA GLN H 274 78.200 -63.788 319.936 1.00 78.93 ATOM 54 CA TYR H 275 75.667 -61.292 318.637 1.00 74.97 ATOM 55 CA THR H 276 73.365 -61.699 321.634 1.00 69.76 ATOM 56 CA ALA H 277 73.582 -61.046 325.407 1.00 66.89 ATOM 57 CA LEU H 278 74.540 -63.995 327.613 1.00 51.88 ATOM 58 CA ALA H 279 71.835 -65.037 330.062 1.00 50.53 ATOM 59 CA ASN H 280 70.965 -67.680 332.619 1.00 67.70 ATOM 60 CA ILE H 281 68.683 -69.373 330.109 1.00 68.42 ATOM 61 CA PRO H 282 69.225 -72.838 328.585 1.00 69.89 ATOM 62 CA GLY H 283 71.662 -72.400 325.715 1.00 66.12 ATOM 63 CA ALA H 284 72.287 -68.756 326.577 1.00 58.62 ATOM 64 CA CYS H 285 75.365 -69.266 328.793 1.00 47.94 ATOM 65 CA SER H 286 77.793 -71.844 330.149 1.00 48.68 ATOM 66 CA GLY H 287 76.025 -74.130 332.620 1.00 59.02 ATOM 67 CA ALA H 288 72.770 -72.237 332.103 1.00 68.84 ATOM 68 CA GLY H 289 69.819 -73.560 334.073 1.00 83.06 ATOM 69 CA THR H 290 72.017 -75.069 336.748 1.00 91.36 ATOM 70 CA ALA H 291 74.185 -74.328 339.800 1.00 98.03 ATOM 71 CA ALA H 292 77.217 -74.023 337.520 1.00 72.01 ATOM 72 CA ALA H 293 75.509 -71.306 335.467 1.00 68.63 ATOM 73 CA THR H 294 77.852 -68.444 334.515 1.00 61.84 ATOM 74 CA VAL H 295 76.660 -65.404 332.557 1.00 60.51 ATOM 75 CA THR H 296 80.357 -64.689 331.978 1.00 83.26 ATOM 76 CA THR H 297 80.843 -67.528 329.489 1.00 61.66 ATOM 77 CA PRO H 298 78.699 -68.474 326.477 1.00 49.39 ATOM 78 CA ASP H 299 77.414 -71.979 325.732 1.00 58.07 ATOM 79 CA TYR H 300 79.879 -72.139 322.824 1.00 70.50 ATOM 80 CA GLY H 301 78.096 -74.899 320.956 1.00 65.29 ATOM 81 CA ASN H 302 74.936 -72.808 321.123 1.00 60.59 ATOM 82 CA THR H 303 76.203 -69.231 320.782 1.00 68.81 ATOM 83 CA GLY H 304 73.266 -68.238 318.586 1.00 82.41 ATOM 84 CA THR H 305 69.627 -67.556 319.560 1.00 89.26 ATOM 85 CA TYR H 306 66.287 -66.614 318.041 1.00 73.70 ATOM 86 CA ASN H 307 65.228 -64.871 321.250 1.00 56.30 ATOM 87 CA GLU H 308 64.915 -61.140 320.485 1.00 41.68 ATOM 88 CA GLN H 309 64.783 -60.503 324.242 1.00 72.50 ATOM 89 CA LEU H 310 68.556 -60.971 324.145 1.00 59.08 ATOM 90 CA ALA H 311 69.341 -58.566 321.261 1.00 62.99 ATOM 91 CA VAL H 312 70.317 -54.930 322.054 1.00 68.47 ATOM 92 CA LEU H 313 69.046 -52.836 319.168 1.00 77.62 ATOM 93 CA ASP H 314 65.723 -51.223 320.124 1.00 64.18 ATOM 94 CA SER H 315 65.063 -49.208 316.967 1.00 63.24 ATOM 95 CA ALA H 316 66.890 -48.013 313.875 1.00 82.38 ATOM 96 CA LYS H 317 66.662 -45.979 310.689 1.00 82.94 ATOM 97 CA ILE H 318 68.928 -44.864 307.870 1.00 88.67 ATOM 98 CA GLN H 319 69.291 -41.278 306.686 1.00 59.46 ATOM 99 CA LEU H 320 70.317 -39.860 303.321 1.00 55.83 ATOM 100 CA ASN H 321 71.746 -36.368 303.505 1.00 44.90 ATOM 101 CA GLY H 322 69.978 -35.771 306.819 1.00 61.04 ATOM 102 CA GLN H 323 66.739 -36.955 305.256 1.00 70.24 ATOM 103 CA ASP H 324 65.037 -40.081 306.629 1.00 72.98 ATOM 104 CA ARG H 325 65.269 -42.967 304.147 1.00 74.96 ATOM 105 CA PHE H 326 62.438 -44.517 306.112 1.00 73.18 ATOM 106 CA ALA H 327 60.613 -44.192 309.424 1.00 59.65 ATOM 107 CA THR H 328 62.089 -45.810 312.537 1.00 65.12 ATOM 108 CA ARG H 329 61.419 -49.503 313.055 1.00 59.26 ATOM 109 CA LYS H 330 62.267 -51.752 316.013 1.00 65.07 ATOM 110 CA GLY H 331 65.287 -54.031 315.846 1.00 65.84 ATOM 111 CA SER H 332 62.997 -57.050 315.457 1.00 50.74 ATOM 112 CA TYR H 333 61.809 -55.639 312.106 1.00 43.73 ATOM 113 CA PHE H 334 65.252 -55.810 310.489 1.00 55.76 ATOM 114 CA ASN H 335 65.799 -59.264 312.035 1.00 51.99 ATOM 115 CA LYS H 336 62.441 -60.889 311.251 1.00 46.30 ATOM 116 CA VAL H 337 60.510 -58.850 308.625 1.00 44.72 ATOM 117 CA GLN H 338 63.204 -57.631 306.218 1.00 40.10 ATOM 118 CA PRO H 339 64.498 -61.236 305.905 1.00 49.17 ATOM 119 CA TYR H 340 61.007 -62.789 305.707 1.00 59.41 ATOM 120 CA GLN H 341 60.120 -60.392 302.873 1.00 74.27 ATOM 121 CA SER H 342 63.317 -60.749 300.834 1.00 80.98 ATOM 122 CA ILE H 343 65.064 -63.968 301.899 1.00 84.84 ATOM 123 CA GLY H 344 62.536 -66.457 303.228 1.00 82.22 ATOM 124 CA GLY H 345 64.607 -68.231 305.859 1.00 75.32 ATOM 125 CA VAL H 346 65.134 -67.464 309.545 1.00 75.35 ATOM 126 CA THR H 347 67.832 -65.237 311.004 1.00 60.54 ATOM 127 CA PRO H 348 69.041 -65.550 314.618 1.00 72.79 ATOM 128 CA ALA H 349 68.536 -62.541 316.868 1.00 55.02 ATOM 129 CA GLY H 350 71.412 -60.066 316.647 1.00 74.14 ATOM 130 CA VAL H 351 71.648 -59.983 312.864 1.00 71.21 ATOM 131 CA TYR H 352 69.925 -57.191 310.964 1.00 77.10 ATOM 132 CA LEU H 353 69.225 -56.587 307.321 1.00 65.54 ATOM 133 CA TYR H 354 67.841 -53.771 305.236 1.00 71.67 ATOM 134 CA SER H 355 67.483 -54.541 301.564 1.00 70.51 ATOM 135 CA PHE H 356 67.413 -52.120 298.649 1.00 80.91 ATOM 136 CA ALA H 357 66.597 -55.114 296.429 1.00 92.41 ATOM 137 CA LEU H 358 63.554 -57.314 295.891 1.00 80.85 ATOM 138 CA LYS H 359 65.728 -60.459 296.018 1.00 79.22 ATOM 139 CA PRO H 360 69.033 -59.738 297.852 1.00 81.25 ATOM 140 CA ALA H 361 70.080 -63.375 297.668 1.00 71.25 ATOM 141 CA GLY H 362 69.691 -63.359 293.890 1.00 59.12 ATOM 142 CA ARG H 363 72.631 -62.724 291.561 1.00 63.64 ATOM 143 CA GLN H 364 70.538 -60.830 289.012 1.00 75.95 ATOM 144 CA PRO H 365 70.001 -57.179 290.100 1.00 89.55 ATOM 145 CA SER H 366 66.554 -56.311 291.446 1.00 76.61 ATOM 146 CA GLY H 367 66.862 -53.115 293.412 1.00 85.75 ATOM 147 CA THR H 368 69.913 -51.031 294.224 1.00 96.03 ATOM 148 CA CYS H 369 71.019 -47.792 295.878 1.00 90.40 ATOM 149 CA ASN H 370 74.027 -45.812 294.676 1.00 88.69 ATOM 150 CA PHE H 371 76.169 -44.768 297.637 1.00 74.06 ATOM 151 CA SER H 372 78.647 -43.151 295.258 1.00 58.32 ATOM 152 CA ARG H 373 76.009 -40.458 295.023 1.00 84.94 ATOM 153 CA ILE H 374 74.985 -40.059 298.666 1.00 73.01 ATOM 154 CA ASP H 375 77.226 -37.458 300.257 1.00 47.00 ATOM 155 CA ASN H 376 75.995 -38.456 303.699 1.00 37.55 ATOM 156 CA ALA H 377 74.738 -41.903 304.686 1.00 68.68 ATOM 157 CA THR H 378 74.091 -42.467 308.397 1.00 72.36 ATOM 158 CA LEU H 379 72.684 -45.260 310.549 1.00 91.21 ATOM 159 CA SER H 380 70.751 -43.903 313.528 1.00 63.91 ATOM 160 CA LEU H 381 70.746 -46.451 316.360 1.00 64.98 ATOM 161 CA THR H 382 68.907 -46.493 319.666 1.00 56.69 ATOM 162 CA TYR H 383 69.624 -49.286 322.114 1.00 57.86 ATOM 163 CA LYS H 384 67.382 -50.939 324.693 1.00 64.36 ATOM 164 CA THR H 385 67.997 -50.266 328.374 1.00 74.38 ATOM 165 CA CYS H 386 70.030 -53.241 329.583 1.00 56.34 ATOM 166 CA SER H 387 68.375 -53.492 332.990 1.00 73.44 ATOM 167 CA ILE H 388 67.299 -57.147 333.105 1.00 71.47 ATOM 168 CA ASP H 389 69.204 -59.318 335.569 1.00 63.69 ATOM 169 CA ALA H 390 70.988 -61.759 333.248 1.00 44.50 ATOM 170 CA THR H 391 71.347 -64.437 335.949 1.00 66.44 ATOM 171 CA SER H 392 67.587 -64.652 336.533 1.00 71.97 ATOM 172 CA PRO H 393 65.481 -66.963 334.288 1.00 53.70 ATOM 173 CA ALA H 394 62.198 -65.478 335.544 1.00 50.38 ATOM 174 CA ALA H 395 63.335 -61.971 334.625 1.00 71.74 ATOM 175 CA VAL H 396 64.730 -62.764 331.155 1.00 66.11 ATOM 176 CA LEU H 397 61.749 -64.932 330.110 1.00 52.50 ATOM 177 CA GLY H 398 59.090 -62.532 331.395 1.00 54.77 ATOM 178 CA ASN H 399 60.056 -59.033 330.293 1.00 82.86 ATOM 179 CA THR H 400 59.302 -55.943 328.179 1.00105.98 ATOM 180 CA GLU H 401 60.184 -55.122 324.547 1.00110.49 ATOM 181 CA THR H 402 62.497 -52.203 325.326 1.00107.56 ATOM 182 CA VAL H 403 64.951 -53.881 327.709 1.00102.82 ATOM 183 CA THR H 404 67.626 -56.605 327.586 1.00 73.51 ATOM 184 CA ALA H 405 69.971 -58.203 330.101 1.00 52.01 ATOM 185 CA ASN H 406 72.809 -56.056 331.526 1.00 46.58 ATOM 186 CA THR H 407 75.066 -58.576 329.856 1.00 67.06 ATOM 187 CA ALA H 408 74.292 -56.592 326.680 1.00 69.06 ATOM 188 CA THR H 409 77.015 -54.064 327.566 1.00 64.52 ATOM 189 CA LEU H 410 79.676 -56.388 326.154 1.00 75.80 ATOM 190 CA LEU H 411 78.231 -56.235 322.632 1.00 60.40 ATOM 191 CA THR H 412 80.428 -53.300 321.573 1.00 51.18 ATOM 192 CA ALA H 413 81.680 -54.316 318.135 1.00 57.44 ATOM 193 CA LEU H 414 79.299 -52.889 315.518 1.00 48.63 ATOM 194 CA ASN H 415 79.926 -54.600 312.189 1.00 52.19 ATOM 195 CA ILE H 416 78.179 -53.067 309.194 1.00 59.11 ATOM 196 CA TYR H 417 78.335 -54.729 305.787 1.00 66.08 ATOM 197 CA ALA H 418 77.228 -53.567 302.358 1.00 57.57 ATOM 198 CA LYS H 419 77.142 -55.779 299.282 1.00 64.41 ATOM 199 CA ASN H 420 77.491 -53.915 296.017 1.00 56.20 ATOM 200 CA TYR H 421 77.677 -54.411 292.274 1.00 70.12 ATOM 201 CA ASN H 422 80.626 -53.514 290.064 1.00 62.54 ATOM 202 CA VAL H 423 81.845 -54.388 286.591 1.00 63.30 ATOM 203 CA LEU H 424 84.874 -56.533 285.804 1.00 44.42 ATOM 204 CA ARG H 425 86.077 -55.907 282.231 1.00 55.95 ATOM 205 CA ILE H 426 88.481 -58.431 280.694 1.00 45.46 ATOM 206 CA MET H 427 90.352 -57.930 277.449 1.00 56.77 ATOM 207 CA SER H 428 93.766 -58.293 275.835 1.00 71.47 ATOM 208 CA GLY H 429 94.916 -60.725 278.495 1.00 54.42 ATOM 209 CA MET H 430 94.067 -58.667 281.550 1.00 41.27 ATOM 210 CA GLY H 431 91.181 -57.483 283.701 1.00 45.65 ATOM 211 CA GLY H 432 90.166 -54.635 285.958 1.00 47.94 ATOM 212 CA LEU H 433 87.214 -53.187 287.809 1.00 49.63 ATOM 213 CA ALA H 434 85.225 -50.528 285.978 1.00 73.81 ATOM 214 CA TYR H 435 84.629 -48.527 289.152 1.00 78.88 ATOM 215 CA ALA H 436 86.801 -47.678 292.135 1.00 80.58 ATOM 216 CA ASN H 437 85.801 -46.461 295.622 1.00 82.40 TER