HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 I 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 I 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 I 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 I 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 I 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 I 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 I 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 I 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 I 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 I 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 I 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 I 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 I 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 I 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 I 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 I 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 I 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 I 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU I 222 47.529 -46.753 279.948 1.00 86.18 ATOM 2 CA PRO I 223 44.757 -49.214 280.919 1.00 80.22 ATOM 3 CA HIS I 224 45.832 -52.115 283.147 1.00 73.51 ATOM 4 CA GLU I 225 44.619 -55.680 283.549 1.00 65.43 ATOM 5 CA TYR I 226 45.896 -57.751 286.448 1.00 52.04 ATOM 6 CA LEU I 227 45.236 -61.451 286.804 1.00 55.38 ATOM 7 CA ILE I 228 44.779 -61.758 290.567 1.00 70.08 ATOM 8 CA GLU I 229 43.632 -64.378 293.036 1.00 73.94 ATOM 9 CA GLN I 230 40.865 -64.387 295.604 1.00 48.60 ATOM 10 CA LEU I 231 39.779 -66.467 298.546 1.00 68.17 ATOM 11 CA GLN I 232 36.335 -68.053 298.929 1.00 67.00 ATOM 12 CA PHE I 233 34.865 -69.460 302.151 1.00 67.77 ATOM 13 CA THR I 234 31.756 -70.691 304.076 1.00 64.23 ATOM 14 CA GLY I 235 31.432 -72.337 307.546 1.00 63.68 ATOM 15 CA SER I 236 29.859 -75.847 307.731 1.00 55.60 ATOM 16 CA GLU I 237 29.027 -78.254 310.574 1.00 54.41 ATOM 17 CA THR I 238 30.753 -81.636 310.780 1.00 61.91 ATOM 18 CA ALA I 239 29.029 -84.700 312.206 1.00 69.38 ATOM 19 CA THR I 240 31.557 -87.391 313.168 1.00 72.40 ATOM 20 CA PRO I 241 30.235 -90.856 314.320 1.00 82.69 ATOM 21 CA SER I 242 30.723 -91.276 318.033 1.00 74.89 ATOM 22 CA ALA I 243 31.204 -95.008 317.455 1.00 77.48 ATOM 23 CA THR I 244 29.713 -98.213 316.044 1.00 80.23 ATOM 24 CA THR I 245 29.248 -96.121 312.895 1.00 85.20 ATOM 25 CA GLN I 246 31.114 -94.079 310.291 1.00 86.31 ATOM 26 CA ALA I 247 29.076 -90.952 309.570 1.00 76.59 ATOM 27 CA SER I 248 29.035 -89.296 306.149 1.00 66.63 ATOM 28 CA GLN I 249 27.970 -86.064 304.468 1.00 63.39 ATOM 29 CA ASN I 250 27.736 -84.221 301.170 1.00 62.14 ATOM 30 CA ILE I 251 28.639 -80.571 301.493 1.00 70.67 ATOM 31 CA ARG I 252 27.263 -78.767 298.454 1.00 67.68 ATOM 32 CA LEU I 253 30.102 -76.389 297.545 1.00 96.33 ATOM 33 CA ASN I 254 29.128 -72.877 296.439 1.00 88.11 ATOM 34 CA PHE I 255 32.182 -71.580 294.597 1.00 94.73 ATOM 35 CA ASN I 256 32.769 -69.751 291.313 1.00 72.32 ATOM 36 CA HIS I 257 35.400 -68.669 288.776 1.00 64.59 ATOM 37 CA PRO I 258 38.518 -70.597 287.626 1.00 72.25 ATOM 38 CA THR I 259 39.694 -72.323 290.835 1.00 58.40 ATOM 39 CA LYS I 260 43.303 -73.443 291.508 1.00 79.76 ATOM 40 CA TYR I 261 42.524 -75.636 294.475 1.00 63.98 ATOM 41 CA LEU I 262 40.332 -76.440 297.461 1.00 60.50 ATOM 42 CA ALA I 263 41.598 -76.517 301.047 1.00 59.10 ATOM 43 CA TRP I 264 39.600 -77.645 304.040 1.00 49.35 ATOM 44 CA ASN I 265 39.840 -78.580 307.711 1.00 55.87 ATOM 45 CA PHE I 266 37.622 -79.844 310.534 1.00 49.57 ATOM 46 CA ASN I 267 38.159 -77.661 313.587 1.00 60.54 ATOM 47 CA ASN I 268 37.041 -77.573 317.224 1.00 74.82 ATOM 48 CA PRO I 269 35.588 -74.035 317.534 1.00 94.86 ATOM 49 CA THR I 270 36.628 -73.888 321.203 1.00 66.58 ATOM 50 CA ASN I 271 40.331 -74.112 320.326 1.00 78.64 ATOM 51 CA TYR I 272 41.853 -71.903 317.622 1.00 93.29 ATOM 52 CA GLY I 273 43.919 -74.069 315.284 1.00 88.92 ATOM 53 CA GLN I 274 42.733 -77.413 316.644 1.00 88.61 ATOM 54 CA TYR I 275 42.210 -79.522 313.546 1.00 67.19 ATOM 55 CA THR I 276 42.988 -82.784 315.331 1.00 71.48 ATOM 56 CA ALA I 277 41.451 -84.811 318.201 1.00 84.14 ATOM 57 CA LEU I 278 42.917 -84.276 321.673 1.00 78.95 ATOM 58 CA ALA I 279 44.555 -87.363 323.150 1.00 54.70 ATOM 59 CA ASN I 280 46.593 -88.549 326.104 1.00 59.95 ATOM 60 CA ILE I 281 49.731 -88.482 323.976 1.00 58.16 ATOM 61 CA PRO I 282 52.716 -86.143 324.478 1.00 58.17 ATOM 62 CA GLY I 283 51.815 -82.852 322.826 1.00 55.77 ATOM 63 CA ALA I 284 48.258 -83.978 322.130 1.00 43.78 ATOM 64 CA CYS I 285 46.632 -82.560 325.293 1.00 50.82 ATOM 65 CA SER I 286 47.260 -80.538 328.437 1.00 51.03 ATOM 66 CA GLY I 287 49.469 -82.501 330.834 1.00 48.45 ATOM 67 CA ALA I 288 49.626 -85.397 328.373 1.00 49.30 ATOM 68 CA GLY I 289 51.732 -88.336 329.500 1.00 77.63 ATOM 69 CA THR I 290 51.272 -87.532 333.161 1.00 84.40 ATOM 70 CA ALA I 291 48.863 -87.669 336.114 1.00 91.39 ATOM 71 CA ALA I 292 47.633 -84.180 335.221 1.00 63.08 ATOM 72 CA ALA I 293 46.695 -85.311 331.707 1.00 56.12 ATOM 73 CA THR I 294 43.365 -83.881 330.507 1.00 67.14 ATOM 74 CA VAL I 295 41.878 -84.761 327.112 1.00 76.99 ATOM 75 CA THR I 296 39.577 -81.774 327.668 1.00 90.99 ATOM 76 CA THR I 297 42.295 -79.173 327.083 1.00 65.11 ATOM 77 CA PRO I 298 44.858 -78.968 324.265 1.00 61.47 ATOM 78 CA ASP I 299 48.602 -78.466 324.754 1.00 63.85 ATOM 79 CA TYR I 300 48.195 -74.944 323.349 1.00 56.70 ATOM 80 CA GLY I 301 51.825 -74.480 322.407 1.00 68.82 ATOM 81 CA ASN I 302 51.607 -77.722 320.456 1.00 79.85 ATOM 82 CA THR I 303 48.070 -77.691 319.041 1.00 90.43 ATOM 83 CA GLY I 304 49.220 -79.164 315.728 1.00 83.63 ATOM 84 CA THR I 305 50.225 -82.760 314.894 1.00 80.54 ATOM 85 CA TYR I 306 51.456 -84.890 312.012 1.00 80.64 ATOM 86 CA ASN I 307 49.771 -87.973 313.466 1.00 66.58 ATOM 87 CA GLU I 308 46.990 -89.013 311.061 1.00 56.46 ATOM 88 CA GLN I 309 45.640 -91.295 313.796 1.00 67.67 ATOM 89 CA LEU I 310 44.179 -88.125 315.304 1.00 60.72 ATOM 90 CA ALA I 311 42.457 -86.760 312.158 1.00 64.93 ATOM 91 CA VAL I 312 38.749 -87.569 311.539 1.00 63.45 ATOM 92 CA LEU I 313 38.314 -87.720 307.781 1.00 74.20 ATOM 93 CA ASP I 314 38.388 -91.357 306.627 1.00 79.37 ATOM 94 CA SER I 315 37.777 -90.858 302.910 1.00 68.83 ATOM 95 CA ALA I 316 36.596 -88.173 300.515 1.00 78.74 ATOM 96 CA LYS I 317 35.761 -87.323 296.922 1.00 89.44 ATOM 97 CA ILE I 318 34.368 -84.408 294.949 1.00105.37 ATOM 98 CA GLN I 319 31.468 -84.647 292.509 1.00 64.23 ATOM 99 CA LEU I 320 30.566 -82.518 289.501 1.00 49.67 ATOM 100 CA ASN I 321 26.895 -82.608 288.615 1.00 33.36 ATOM 101 CA GLY I 322 26.495 -85.937 290.412 1.00 57.61 ATOM 102 CA GLN I 323 29.462 -87.284 288.479 1.00 67.93 ATOM 103 CA ASP I 324 32.596 -88.348 290.376 1.00 76.26 ATOM 104 CA ARG I 325 35.473 -85.934 289.724 1.00 85.37 ATOM 105 CA PHE I 326 37.713 -88.705 290.989 1.00 83.14 ATOM 106 CA ALA I 327 37.571 -91.991 292.882 1.00 66.93 ATOM 107 CA THR I 328 37.458 -91.951 296.687 1.00 75.10 ATOM 108 CA ARG I 329 40.750 -91.572 298.516 1.00 71.31 ATOM 109 CA LYS I 330 41.515 -91.741 302.243 1.00 78.21 ATOM 110 CA GLY I 331 41.955 -88.547 304.230 1.00 85.02 ATOM 111 CA SER I 332 45.710 -89.177 304.425 1.00 55.55 ATOM 112 CA TYR I 333 45.906 -88.802 300.624 1.00 49.10 ATOM 113 CA PHE I 334 44.722 -85.183 300.638 1.00 64.40 ATOM 114 CA ASN I 335 46.972 -84.461 303.649 1.00 59.67 ATOM 115 CA LYS I 336 50.182 -86.171 302.505 1.00 41.00 ATOM 116 CA VAL I 337 50.055 -86.961 298.742 1.00 47.00 ATOM 117 CA GLN I 338 48.264 -83.962 297.215 1.00 31.91 ATOM 118 CA PRO I 339 50.708 -81.625 299.043 1.00 44.97 ATOM 119 CA TYR I 340 53.785 -83.773 298.302 1.00 56.77 ATOM 120 CA GLN I 341 52.889 -83.745 294.594 1.00 59.37 ATOM 121 CA SER I 342 52.079 -80.038 294.254 1.00 62.07 ATOM 122 CA ILE I 343 53.649 -78.195 297.198 1.00 72.72 ATOM 123 CA GLY I 344 56.673 -80.089 298.475 1.00 71.55 ATOM 124 CA GLY I 345 56.504 -79.276 302.172 1.00 67.51 ATOM 125 CA VAL I 346 54.738 -81.047 305.033 1.00 77.55 ATOM 126 CA THR I 347 51.192 -80.408 306.216 1.00 67.03 ATOM 127 CA PRO I 348 50.005 -81.258 309.747 1.00 80.52 ATOM 128 CA ALA I 349 47.211 -83.806 310.056 1.00 67.94 ATOM 129 CA GLY I 350 43.769 -82.217 309.820 1.00 69.26 ATOM 130 CA VAL I 351 44.472 -80.062 306.779 1.00 75.21 ATOM 131 CA TYR I 352 43.440 -81.310 303.346 1.00 81.41 ATOM 132 CA LEU I 353 44.142 -80.135 299.847 1.00 63.96 ATOM 133 CA TYR I 354 42.966 -81.029 296.381 1.00 76.70 ATOM 134 CA SER I 355 44.651 -79.128 293.595 1.00 73.01 ATOM 135 CA PHE I 356 43.349 -78.421 290.107 1.00 84.51 ATOM 136 CA ALA I 357 46.777 -76.935 289.334 1.00 98.96 ATOM 137 CA LEU I 358 50.254 -78.346 288.768 1.00 87.84 ATOM 138 CA LYS I 359 51.769 -75.695 291.071 1.00 76.12 ATOM 139 CA PRO I 360 49.097 -74.288 293.453 1.00 88.24 ATOM 140 CA ALA I 361 51.656 -72.203 295.310 1.00 73.92 ATOM 141 CA GLY I 362 52.725 -70.524 292.078 1.00 56.43 ATOM 142 CA ARG I 363 51.283 -67.187 290.965 1.00 71.28 ATOM 143 CA GLN I 364 51.341 -68.095 287.271 1.00 68.34 ATOM 144 CA PRO I 365 48.301 -70.260 286.332 1.00 86.67 ATOM 145 CA SER I 366 48.972 -73.962 285.784 1.00 83.79 ATOM 146 CA GLY I 367 45.685 -75.777 286.075 1.00 96.44 ATOM 147 CA THR I 368 42.239 -74.469 286.919 1.00 84.02 ATOM 148 CA CYS I 369 38.593 -75.505 287.227 1.00 69.36 ATOM 149 CA ASN I 370 35.728 -73.137 286.457 1.00 81.92 ATOM 150 CA PHE I 371 33.098 -73.346 289.189 1.00 83.88 ATOM 151 CA SER I 372 31.073 -70.659 287.431 1.00 63.12 ATOM 152 CA ARG I 373 30.189 -73.473 285.070 1.00 68.28 ATOM 153 CA ILE I 374 29.509 -76.326 287.494 1.00 53.34 ATOM 154 CA ASP I 375 25.847 -76.233 288.448 1.00 34.36 ATOM 155 CA ASN I 376 26.484 -78.696 291.256 1.00 27.08 ATOM 156 CA ALA I 377 29.754 -79.105 293.142 1.00 58.06 ATOM 157 CA THR I 378 29.674 -81.388 296.190 1.00 64.15 ATOM 158 CA LEU I 379 32.201 -82.734 298.684 1.00 96.22 ATOM 159 CA SER I 380 31.328 -86.262 299.803 1.00 66.95 ATOM 160 CA LEU I 381 32.793 -86.944 303.256 1.00 62.87 ATOM 161 CA THR I 382 32.964 -90.122 305.303 1.00 57.86 ATOM 162 CA TYR I 383 34.365 -89.953 308.810 1.00 64.58 ATOM 163 CA LYS I 384 36.252 -92.549 310.837 1.00 79.76 ATOM 164 CA THR I 385 34.521 -94.219 313.769 1.00 75.81 ATOM 165 CA CYS I 386 35.712 -92.303 316.825 1.00 47.57 ATOM 166 CA SER I 387 35.940 -95.323 319.115 1.00 58.09 ATOM 167 CA ILE I 388 39.501 -95.061 320.453 1.00 61.22 ATOM 168 CA ASP I 389 39.791 -94.164 324.131 1.00 55.51 ATOM 169 CA ALA I 390 41.490 -90.757 323.976 1.00 56.07 ATOM 170 CA THR I 391 42.912 -91.042 327.514 1.00 74.05 ATOM 171 CA SER I 392 44.821 -94.239 326.715 1.00 74.34 ATOM 172 CA PRO I 393 48.328 -93.977 325.142 1.00 68.07 ATOM 173 CA ALA I 394 48.422 -97.698 324.306 1.00 55.14 ATOM 174 CA ALA I 395 45.142 -97.439 322.404 1.00 75.42 ATOM 175 CA VAL I 396 45.929 -94.258 320.432 1.00 59.38 ATOM 176 CA LEU I 397 49.465 -95.363 319.462 1.00 54.92 ATOM 177 CA GLY I 398 48.480 -98.901 318.468 1.00 65.76 ATOM 178 CA ASN I 399 45.337 -98.678 316.354 1.00101.46 ATOM 179 CA THR I 400 43.625 -99.145 312.975 1.00114.55 ATOM 180 CA GLU I 401 43.359 -96.802 309.962 1.00126.11 ATOM 181 CA THR I 402 39.588 -96.323 310.138 1.00114.03 ATOM 182 CA VAL I 403 39.209 -95.110 313.729 1.00 91.75 ATOM 183 CA THR I 404 40.185 -92.069 315.819 1.00 65.24 ATOM 184 CA ALA I 405 39.765 -91.035 319.449 1.00 46.06 ATOM 185 CA ASN I 406 36.224 -90.240 320.688 1.00 37.77 ATOM 186 CA THR I 407 37.599 -86.773 321.273 1.00 70.19 ATOM 187 CA ALA I 408 37.075 -86.347 317.511 1.00 70.54 ATOM 188 CA THR I 409 33.400 -85.478 318.100 1.00 67.38 ATOM 189 CA LEU I 410 34.353 -81.896 318.954 1.00 73.81 ATOM 190 CA LEU I 411 35.771 -81.226 315.481 1.00 62.36 ATOM 191 CA THR I 412 32.480 -79.875 314.106 1.00 54.19 ATOM 192 CA ALA I 413 33.513 -76.754 312.211 1.00 60.08 ATOM 193 CA LEU I 414 34.119 -77.707 308.567 1.00 50.37 ATOM 194 CA ASN I 415 36.020 -74.910 306.842 1.00 43.54 ATOM 195 CA ILE I 416 36.309 -75.199 303.074 1.00 39.91 ATOM 196 CA TYR I 417 38.423 -72.750 301.091 1.00 57.66 ATOM 197 CA ALA I 418 38.807 -72.184 297.366 1.00 48.28 ATOM 198 CA LYS I 419 41.423 -69.925 295.809 1.00 61.71 ATOM 199 CA ASN I 420 40.461 -68.525 292.439 1.00 54.99 ATOM 200 CA TYR I 421 41.663 -66.249 289.672 1.00 74.55 ATOM 201 CA ASN I 422 39.970 -63.048 288.543 1.00 68.62 ATOM 202 CA VAL I 423 40.909 -59.980 286.543 1.00 60.23 ATOM 203 CA LEU I 424 41.380 -56.490 287.964 1.00 45.11 ATOM 204 CA ARG I 425 41.101 -53.862 285.203 1.00 56.96 ATOM 205 CA ILE I 426 42.377 -50.355 285.955 1.00 42.83 ATOM 206 CA MET I 427 41.790 -47.328 283.763 1.00 56.95 ATOM 207 CA SER I 428 40.781 -43.675 283.853 1.00 78.59 ATOM 208 CA GLY I 429 41.616 -43.395 287.532 1.00 60.77 ATOM 209 CA MET I 430 39.599 -46.331 288.800 1.00 55.00 ATOM 210 CA GLY I 431 39.539 -50.115 288.972 1.00 53.34 ATOM 211 CA GLY I 432 37.130 -53.014 289.171 1.00 72.31 ATOM 212 CA LEU I 433 36.952 -56.776 288.962 1.00 70.86 ATOM 213 CA ALA I 434 36.150 -58.229 285.550 1.00 83.51 ATOM 214 CA TYR I 435 34.028 -61.011 287.029 1.00 88.39 ATOM 215 CA ALA I 436 31.538 -61.144 289.879 1.00 87.80 ATOM 216 CA ASN I 437 30.199 -64.157 291.819 1.00 80.28 TER