HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 J 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 J 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 J 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 J 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 J 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 J 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 J 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 J 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 J 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 J 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 J 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 J 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 J 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 J 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 J 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 J 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 J 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 J 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU J 222 53.143 -85.939 265.179 1.00 70.37 ATOM 2 CA PRO J 223 56.346 -87.848 266.060 1.00 63.28 ATOM 3 CA HIS J 224 57.712 -87.244 269.568 1.00 61.08 ATOM 4 CA GLU J 225 61.199 -87.274 271.047 1.00 62.15 ATOM 5 CA TYR J 226 61.611 -87.133 274.805 1.00 58.95 ATOM 6 CA LEU J 227 64.946 -86.656 276.511 1.00 71.06 ATOM 7 CA ILE J 228 64.546 -88.903 279.552 1.00 77.34 ATOM 8 CA GLU J 229 66.722 -90.266 282.323 1.00 77.97 ATOM 9 CA GLN J 230 67.499 -93.796 283.413 1.00 65.71 ATOM 10 CA LEU J 231 69.087 -95.537 286.352 1.00 91.20 ATOM 11 CA GLN J 232 72.033 -97.944 286.115 1.00 73.57 ATOM 12 CA PHE J 233 73.182-100.349 288.837 1.00 64.82 ATOM 13 CA THR J 234 75.302-103.415 289.826 1.00 51.44 ATOM 14 CA GLY J 235 76.022-104.972 293.277 1.00 62.23 ATOM 15 CA SER J 236 79.691-105.185 294.421 1.00 51.91 ATOM 16 CA GLU J 237 81.447-106.571 297.517 1.00 52.76 ATOM 17 CA THR J 238 83.365-104.238 299.826 1.00 56.75 ATOM 18 CA ALA J 239 86.447-105.367 301.735 1.00 58.73 ATOM 19 CA THR J 240 87.213-103.023 304.643 1.00 56.57 ATOM 20 CA PRO J 241 90.492-103.561 306.650 1.00 52.42 ATOM 21 CA SER J 242 89.729-105.000 310.047 1.00 51.06 ATOM 22 CA ALA J 243 92.745-103.123 311.419 1.00 69.30 ATOM 23 CA THR J 244 96.492-102.528 311.154 1.00 96.57 ATOM 24 CA THR J 245 95.716-101.904 307.479 1.00 82.61 ATOM 25 CA GLN J 246 93.696 -99.712 305.121 1.00 78.14 ATOM 26 CA ALA J 247 92.267-101.941 302.392 1.00 67.17 ATOM 27 CA SER J 248 91.707-100.701 298.843 1.00 61.65 ATOM 28 CA GLN J 249 89.931-101.690 295.635 1.00 56.12 ATOM 29 CA ASN J 250 89.284-100.723 292.033 1.00 53.19 ATOM 30 CA ILE J 251 85.711-101.348 290.996 1.00 71.24 ATOM 31 CA ARG J 252 85.602-101.406 287.205 1.00 82.35 ATOM 32 CA LEU J 253 82.419 -99.453 286.435 1.00105.02 ATOM 33 CA ASN J 254 80.227-100.762 283.608 1.00 97.68 ATOM 34 CA PHE J 255 78.060 -97.802 282.638 1.00 98.98 ATOM 35 CA ASN J 256 77.013 -96.193 279.351 1.00 80.64 ATOM 36 CA HIS J 257 75.400 -93.131 277.757 1.00 60.37 ATOM 37 CA PRO J 258 75.731 -89.453 278.816 1.00 72.98 ATOM 38 CA THR J 259 75.835 -89.665 282.639 1.00 56.78 ATOM 39 CA LYS J 260 74.821 -86.820 285.006 1.00 68.42 ATOM 40 CA TYR J 261 76.340 -88.299 288.125 1.00 56.47 ATOM 41 CA LEU J 262 77.398 -91.340 290.125 1.00 49.29 ATOM 42 CA ALA J 263 75.992 -92.207 293.546 1.00 61.61 ATOM 43 CA TRP J 264 77.219 -94.998 295.766 1.00 62.27 ATOM 44 CA ASN J 265 77.021 -96.445 299.272 1.00 66.91 ATOM 45 CA PHE J 266 78.514 -99.273 301.333 1.00 55.40 ATOM 46 CA ASN J 267 75.707-101.157 303.046 1.00 72.54 ATOM 47 CA ASN J 268 75.333-103.982 305.569 1.00 79.18 ATOM 48 CA PRO J 269 73.027-106.421 303.712 1.00 82.47 ATOM 49 CA THR J 270 71.524-107.581 307.020 1.00 57.33 ATOM 50 CA ASN J 271 70.078-104.134 307.755 1.00 69.12 ATOM 51 CA TYR J 272 68.112-102.216 305.117 1.00 96.01 ATOM 52 CA GLY J 273 69.445 -98.664 304.928 1.00 96.61 ATOM 53 CA GLN J 274 72.509 -99.247 307.102 1.00 82.76 ATOM 54 CA TYR J 275 75.258 -97.351 305.321 1.00 78.30 ATOM 55 CA THR J 276 77.176 -96.635 308.524 1.00 71.15 ATOM 56 CA ALA J 277 78.958 -98.711 311.211 1.00 73.66 ATOM 57 CA LEU J 278 76.965 -99.555 314.341 1.00 49.53 ATOM 58 CA ALA J 279 78.384 -98.056 317.528 1.00 57.61 ATOM 59 CA ASN J 280 77.668 -97.628 321.214 1.00 76.15 ATOM 60 CA ILE J 281 76.553 -94.058 320.589 1.00 76.70 ATOM 61 CA PRO J 282 72.998 -92.721 321.046 1.00 57.96 ATOM 62 CA GLY J 283 71.085 -93.614 317.898 1.00 42.30 ATOM 63 CA ALA J 284 73.958 -95.689 316.534 1.00 53.49 ATOM 64 CA CYS J 285 72.835 -99.087 317.888 1.00 54.43 ATOM 65 CA SER J 286 70.095-100.897 319.784 1.00 61.92 ATOM 66 CA GLY J 287 70.074 -99.794 323.422 1.00 72.81 ATOM 67 CA ALA J 288 72.995 -97.447 322.766 1.00 76.19 ATOM 68 CA GLY J 289 74.138 -95.439 325.766 1.00 86.82 ATOM 69 CA THR J 290 72.833 -97.989 328.230 1.00 95.36 ATOM 70 CA ALA J 291 73.452-101.400 329.823 1.00107.60 ATOM 71 CA ALA J 292 71.357-103.015 327.088 1.00 84.91 ATOM 72 CA ALA J 293 73.594-101.538 324.379 1.00 78.56 ATOM 73 CA THR J 294 74.336-103.984 321.544 1.00 62.26 ATOM 74 CA VAL J 295 76.609-103.086 318.623 1.00 60.16 ATOM 75 CA THR J 296 75.125-106.144 316.902 1.00 64.42 ATOM 76 CA THR J 297 71.740-104.530 316.254 1.00 43.60 ATOM 77 CA PRO J 298 70.958-101.093 314.795 1.00 45.14 ATOM 78 CA ASP J 299 68.564 -98.561 316.336 1.00 63.00 ATOM 79 CA TYR J 300 66.154 -99.268 313.467 1.00 64.73 ATOM 80 CA GLY J 301 64.185 -96.062 313.815 1.00 55.93 ATOM 81 CA ASN J 302 67.461 -94.168 313.591 1.00 54.43 ATOM 82 CA THR J 303 69.525 -96.218 311.131 1.00 66.75 ATOM 83 CA GLY J 304 70.961 -93.097 309.504 1.00 79.63 ATOM 84 CA THR J 305 73.664 -90.715 310.797 1.00 84.32 ATOM 85 CA TYR J 306 75.510 -87.547 309.844 1.00 84.88 ATOM 86 CA ASN J 307 78.578 -88.652 311.796 1.00 75.40 ATOM 87 CA GLU J 308 81.394 -89.243 309.280 1.00 47.72 ATOM 88 CA GLN J 309 83.331 -91.016 312.041 1.00 63.80 ATOM 89 CA LEU J 310 81.053 -93.976 311.322 1.00 62.72 ATOM 90 CA ALA J 311 81.505 -94.108 307.514 1.00 64.75 ATOM 91 CA VAL J 312 84.171 -96.443 306.017 1.00 73.53 ATOM 92 CA LEU J 313 85.396 -94.759 302.857 1.00 70.90 ATOM 93 CA ASP J 314 88.670 -92.929 303.567 1.00 78.62 ATOM 94 CA SER J 315 89.431 -91.609 300.085 1.00 65.71 ATOM 95 CA ALA J 316 88.338 -92.139 296.500 1.00 69.33 ATOM 96 CA LYS J 317 88.889 -91.171 292.879 1.00 76.78 ATOM 97 CA ILE J 318 87.609 -92.161 289.454 1.00 91.26 ATOM 98 CA GLN J 319 89.823 -93.083 286.512 1.00 56.85 ATOM 99 CA LEU J 320 89.200 -92.891 282.777 1.00 51.77 ATOM 100 CA ASN J 321 91.309 -95.283 280.751 1.00 54.16 ATOM 101 CA GLY J 322 93.865 -95.480 283.560 1.00 67.10 ATOM 102 CA GLN J 323 93.972 -91.695 283.668 1.00 72.10 ATOM 103 CA ASP J 324 92.856 -89.885 286.837 1.00 81.08 ATOM 104 CA ARG J 325 89.563 -88.049 286.276 1.00 80.85 ATOM 105 CA PHE J 326 90.470 -86.066 289.364 1.00 70.91 ATOM 106 CA ALA J 327 92.837 -86.126 292.326 1.00 73.61 ATOM 107 CA THR J 328 91.968 -88.234 295.375 1.00 62.09 ATOM 108 CA ARG J 329 89.581 -86.723 297.902 1.00 57.95 ATOM 109 CA LYS J 330 88.469 -88.034 301.301 1.00 72.56 ATOM 110 CA GLY J 331 85.114 -89.754 301.654 1.00 73.37 ATOM 111 CA SER J 332 83.732 -86.702 303.466 1.00 50.87 ATOM 112 CA TYR J 333 84.212 -84.661 300.266 1.00 47.69 ATOM 113 CA PHE J 334 81.772 -86.760 298.227 1.00 70.41 ATOM 114 CA ASN J 335 79.348 -86.805 301.183 1.00 60.21 ATOM 115 CA LYS J 336 79.448 -83.129 302.187 1.00 45.46 ATOM 116 CA VAL J 337 81.056 -80.993 299.422 1.00 38.34 ATOM 117 CA GLN J 338 79.801 -82.558 296.180 1.00 36.74 ATOM 118 CA PRO J 339 76.204 -82.345 297.520 1.00 46.99 ATOM 119 CA TYR J 340 76.643 -78.845 298.998 1.00 52.57 ATOM 120 CA GLN J 341 77.936 -77.605 295.629 1.00 55.18 ATOM 121 CA SER J 342 75.322 -79.248 293.399 1.00 64.04 ATOM 122 CA ILE J 343 72.311 -80.156 295.557 1.00 63.09 ATOM 123 CA GLY J 344 72.089 -77.840 298.548 1.00 72.85 ATOM 124 CA GLY J 345 70.626 -80.179 301.141 1.00 74.92 ATOM 125 CA VAL J 346 72.311 -82.511 303.626 1.00 74.68 ATOM 126 CA THR J 347 73.259 -86.130 303.010 1.00 68.75 ATOM 127 CA PRO J 348 73.730 -88.655 305.840 1.00 78.53 ATOM 128 CA ALA J 349 77.174 -90.203 306.213 1.00 62.37 ATOM 129 CA GLY J 350 77.611 -93.297 304.053 1.00 71.98 ATOM 130 CA VAL J 351 76.176 -91.831 300.861 1.00 80.49 ATOM 131 CA TYR J 352 78.539 -90.433 298.244 1.00 88.48 ATOM 132 CA LEU J 353 78.030 -88.416 295.115 1.00 65.63 ATOM 133 CA TYR J 354 80.179 -87.228 292.255 1.00 82.54 ATOM 134 CA SER J 355 78.407 -85.042 289.743 1.00 68.70 ATOM 135 CA PHE J 356 79.285 -84.454 286.105 1.00 86.72 ATOM 136 CA ALA J 357 76.523 -81.824 286.059 1.00 99.30 ATOM 137 CA LEU J 358 76.107 -78.337 287.497 1.00 85.54 ATOM 138 CA LYS J 359 72.597 -79.203 288.746 1.00 86.89 ATOM 139 CA PRO J 360 72.191 -83.014 289.089 1.00 86.62 ATOM 140 CA ALA J 361 68.740 -82.643 290.607 1.00 70.98 ATOM 141 CA GLY J 362 67.566 -80.637 287.604 1.00 67.09 ATOM 142 CA ARG J 363 65.756 -82.253 284.678 1.00 68.27 ATOM 143 CA GLN J 364 67.356 -79.969 282.089 1.00 83.38 ATOM 144 CA PRO J 365 70.895 -81.178 281.181 1.00102.30 ATOM 145 CA SER J 366 73.781 -79.175 282.633 1.00 87.60 ATOM 146 CA GLY J 367 76.863 -81.337 282.481 1.00 93.99 ATOM 147 CA THR J 368 77.284 -84.912 281.331 1.00 80.18 ATOM 148 CA CYS J 369 79.890 -87.613 280.713 1.00 78.94 ATOM 149 CA ASN J 370 79.516 -90.222 277.978 1.00 87.00 ATOM 150 CA PHE J 371 80.355 -93.667 279.344 1.00 88.48 ATOM 151 CA SER J 372 79.527 -95.192 275.967 1.00 60.83 ATOM 152 CA ARG J 373 82.873 -93.744 274.977 1.00 49.34 ATOM 153 CA ILE J 374 85.024 -94.645 277.982 1.00 41.56 ATOM 154 CA ASP J 375 86.542 -98.060 277.384 1.00 47.68 ATOM 155 CA ASN J 376 87.624 -98.252 281.007 1.00 53.41 ATOM 156 CA ALA J 377 85.894 -96.538 283.927 1.00 77.89 ATOM 157 CA THR J 378 87.124 -97.478 287.407 1.00 65.18 ATOM 158 CA LEU J 379 86.410 -96.374 290.969 1.00 81.71 ATOM 159 CA SER J 380 89.526 -96.522 293.140 1.00 53.16 ATOM 160 CA LEU J 381 88.554 -96.969 296.798 1.00 61.03 ATOM 161 CA THR J 382 90.645 -96.894 299.955 1.00 55.16 ATOM 162 CA TYR J 383 88.982 -97.694 303.255 1.00 58.85 ATOM 163 CA LYS J 384 89.738 -96.447 306.760 1.00 69.68 ATOM 164 CA THR J 385 91.304 -98.823 309.266 1.00 62.02 ATOM 165 CA CYS J 386 88.391-100.108 311.342 1.00 44.41 ATOM 166 CA SER J 387 90.262-100.168 314.647 1.00 71.17 ATOM 167 CA ILE J 388 87.960 -98.152 316.922 1.00 78.24 ATOM 168 CA ASP J 389 86.202-100.151 319.630 1.00 78.30 ATOM 169 CA ALA J 390 82.547 -99.819 318.602 1.00 57.66 ATOM 170 CA THR J 391 81.246-100.473 322.136 1.00 74.11 ATOM 171 CA SER J 392 83.156 -97.525 323.610 1.00 60.15 ATOM 172 CA PRO J 393 81.565 -94.023 323.488 1.00 56.10 ATOM 173 CA ALA J 394 84.824 -92.315 324.502 1.00 44.77 ATOM 174 CA ALA J 395 86.685 -93.977 321.634 1.00 54.70 ATOM 175 CA VAL J 396 84.101 -93.338 318.891 1.00 53.30 ATOM 176 CA LEU J 397 83.494 -89.688 319.884 1.00 57.26 ATOM 177 CA GLY J 398 87.174 -88.811 320.292 1.00 58.41 ATOM 178 CA ASN J 399 89.046 -90.243 317.320 1.00 71.76 ATOM 179 CA THR J 400 91.081 -89.656 314.144 1.00 96.11 ATOM 180 CA GLU J 401 89.966 -89.031 310.539 1.00110.83 ATOM 181 CA THR J 402 91.397 -92.245 309.092 1.00118.48 ATOM 182 CA VAL J 403 89.727 -94.824 311.346 1.00 98.91 ATOM 183 CA THR J 404 86.212 -96.130 312.050 1.00 74.81 ATOM 184 CA ALA J 405 84.704 -98.704 314.398 1.00 53.33 ATOM 185 CA ASN J 406 85.506-102.399 313.763 1.00 41.03 ATOM 186 CA THR J 407 81.789-102.732 313.193 1.00 64.83 ATOM 187 CA ALA J 408 82.578-101.300 309.737 1.00 82.36 ATOM 188 CA THR J 409 83.539-104.781 308.489 1.00 71.15 ATOM 189 CA LEU J 410 79.872-105.628 307.933 1.00 96.86 ATOM 190 CA LEU J 411 79.425-102.895 305.315 1.00 82.88 ATOM 191 CA THR J 412 80.254-105.196 302.388 1.00 61.81 ATOM 192 CA ALA J 413 77.582-104.381 299.821 1.00 63.62 ATOM 193 CA LEU J 414 78.930-101.679 297.491 1.00 53.91 ATOM 194 CA ASN J 415 76.058-100.166 295.525 1.00 59.56 ATOM 195 CA ILE J 416 77.041 -97.860 292.684 1.00 48.16 ATOM 196 CA TYR J 417 74.411 -95.938 290.741 1.00 68.09 ATOM 197 CA ALA J 418 74.626 -93.851 287.586 1.00 61.83 ATOM 198 CA LYS J 419 71.802 -91.693 286.258 1.00 80.83 ATOM 199 CA ASN J 420 71.904 -91.122 282.530 1.00 51.82 ATOM 200 CA TYR J 421 70.054 -89.445 279.693 1.00 65.53 ATOM 201 CA ASN J 422 68.489 -91.209 276.723 1.00 56.48 ATOM 202 CA VAL J 423 65.928 -90.395 274.058 1.00 59.50 ATOM 203 CA LEU J 424 62.447 -91.889 273.834 1.00 41.60 ATOM 204 CA ARG J 425 61.039 -91.496 270.301 1.00 49.67 ATOM 205 CA ILE J 426 57.297 -92.010 269.811 1.00 48.63 ATOM 206 CA MET J 427 55.576 -92.285 266.458 1.00 58.56 ATOM 207 CA SER J 428 53.006 -94.297 264.528 1.00 68.46 ATOM 208 CA GLY J 429 51.490 -95.668 267.714 1.00 44.33 ATOM 209 CA MET J 430 54.648 -96.985 269.325 1.00 61.06 ATOM 210 CA GLY J 431 57.797 -95.911 271.134 1.00 62.31 ATOM 211 CA GLY J 432 61.369 -96.984 271.714 1.00 57.65 ATOM 212 CA LEU J 433 64.650 -95.813 273.159 1.00 63.60 ATOM 213 CA ALA J 434 67.064 -94.181 270.728 1.00 82.00 ATOM 214 CA TYR J 435 70.095 -95.741 272.408 1.00 91.93 ATOM 215 CA ALA J 436 70.772 -99.160 273.886 1.00114.14 ATOM 216 CA ASN J 437 73.499-100.274 276.325 1.00112.46 TER