HEADER VIRUS 04-NOV-09 3KK5 TITLE Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction TITLE 2 of the virophage Sputnik COMPND MOL_ID: 1; COMPND 2 MOLECULE: Major capsid protein; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; EXPDTA ELECTRON MICROSCOPY DBREF 3KK5 K 1 437 UNP P30328 MCP_PBCV1 1 437 SEQRES 1 K 216 LEU PRO HIS GLU TYR LEU ILE GLU GLN LEU GLN PHE THR SEQRES 2 K 216 GLY SER GLU THR ALA THR PRO SER ALA THR THR GLN ALA SEQRES 3 K 216 SER GLN ASN ILE ARG LEU ASN PHE ASN HIS PRO THR LYS SEQRES 4 K 216 TYR LEU ALA TRP ASN PHE ASN ASN PRO THR ASN TYR GLY SEQRES 5 K 216 GLN TYR THR ALA LEU ALA ASN ILE PRO GLY ALA CYS SER SEQRES 6 K 216 GLY ALA GLY THR ALA ALA ALA THR VAL THR THR PRO ASP SEQRES 7 K 216 TYR GLY ASN THR GLY THR TYR ASN GLU GLN LEU ALA VAL SEQRES 8 K 216 LEU ASP SER ALA LYS ILE GLN LEU ASN GLY GLN ASP ARG SEQRES 9 K 216 PHE ALA THR ARG LYS GLY SER TYR PHE ASN LYS VAL GLN SEQRES 10 K 216 PRO TYR GLN SER ILE GLY GLY VAL THR PRO ALA GLY VAL SEQRES 11 K 216 TYR LEU TYR SER PHE ALA LEU LYS PRO ALA GLY ARG GLN SEQRES 12 K 216 PRO SER GLY THR CYS ASN PHE SER ARG ILE ASP ASN ALA SEQRES 13 K 216 THR LEU SER LEU THR TYR LYS THR CYS SER ILE ASP ALA SEQRES 14 K 216 THR SER PRO ALA ALA VAL LEU GLY ASN THR GLU THR VAL SEQRES 15 K 216 THR ALA ASN THR ALA THR LEU LEU THR ALA LEU ASN ILE SEQRES 16 K 216 TYR ALA LYS ASN TYR ASN VAL LEU ARG ILE MET SER GLY SEQRES 17 K 216 MET GLY GLY LEU ALA TYR ALA ASN ATOM 1 CA LEU K 222 148.833 -26.241 279.472 1.00 70.79 ATOM 2 CA PRO K 223 148.816 -23.382 282.024 1.00 64.50 ATOM 3 CA HIS K 224 147.138 -24.150 285.357 1.00 64.73 ATOM 4 CA GLU K 225 145.271 -22.038 287.886 1.00 64.65 ATOM 5 CA TYR K 226 144.414 -23.525 291.260 1.00 59.90 ATOM 6 CA LEU K 227 142.158 -21.824 293.760 1.00 68.94 ATOM 7 CA ILE K 228 143.856 -22.746 297.034 1.00 67.79 ATOM 8 CA GLU K 229 143.594 -21.795 300.684 1.00 72.99 ATOM 9 CA GLN K 230 146.113 -20.383 303.113 1.00 64.76 ATOM 10 CA LEU K 231 146.436 -19.849 306.823 1.00 81.45 ATOM 11 CA GLN K 232 147.136 -16.488 308.479 1.00 69.76 ATOM 12 CA PHE K 233 148.276 -15.958 312.075 1.00 76.09 ATOM 13 CA THR K 234 149.768 -13.590 314.732 1.00 61.47 ATOM 14 CA GLY K 235 150.273 -14.058 318.522 1.00 57.65 ATOM 15 CA SER K 236 148.531 -11.575 320.889 1.00 44.40 ATOM 16 CA GLU K 237 148.441 -11.105 324.678 1.00 50.46 ATOM 17 CA THR K 238 145.170 -11.511 326.574 1.00 55.28 ATOM 18 CA ALA K 239 144.394 -9.519 329.707 1.00 54.69 ATOM 19 CA THR K 240 141.580 -11.130 331.715 1.00 55.79 ATOM 20 CA PRO K 241 140.180 -9.242 334.804 1.00 50.39 ATOM 21 CA SER K 242 141.307 -10.923 337.986 1.00 55.17 ATOM 22 CA ALA K 243 138.037 -9.835 339.607 1.00 65.93 ATOM 23 CA THR K 244 135.757 -6.922 340.497 1.00 84.03 ATOM 24 CA THR K 245 136.116 -6.050 336.808 1.00 71.99 ATOM 25 CA GLN K 246 135.531 -7.370 333.296 1.00 61.69 ATOM 26 CA ALA K 247 138.536 -6.417 331.169 1.00 48.61 ATOM 27 CA SER K 248 138.240 -5.656 327.457 1.00 45.01 ATOM 28 CA GLN K 249 140.408 -5.212 324.370 1.00 52.29 ATOM 29 CA ASN K 250 140.398 -4.395 320.675 1.00 61.91 ATOM 30 CA ILE K 251 142.807 -6.550 318.723 1.00 68.03 ATOM 31 CA ARG K 252 143.453 -4.834 315.401 1.00 67.73 ATOM 32 CA LEU K 253 143.405 -7.748 312.942 1.00 79.40 ATOM 33 CA ASN K 254 145.995 -7.696 310.148 1.00 77.25 ATOM 34 CA PHE K 255 144.616 -10.070 307.527 1.00 71.53 ATOM 35 CA ASN K 256 144.198 -9.960 303.748 1.00 64.29 ATOM 36 CA HIS K 257 142.552 -11.634 300.746 1.00 60.53 ATOM 37 CA PRO K 258 139.059 -13.220 300.534 1.00 73.68 ATOM 38 CA THR K 259 138.644 -14.851 303.972 1.00 58.34 ATOM 39 CA LYS K 260 136.333 -17.826 304.707 1.00 70.87 ATOM 40 CA TYR K 261 136.435 -17.527 308.466 1.00 60.16 ATOM 41 CA LEU K 262 138.269 -16.495 311.620 1.00 60.29 ATOM 42 CA ALA K 263 139.208 -18.911 314.398 1.00 63.87 ATOM 43 CA TRP K 264 140.712 -17.940 317.717 1.00 63.02 ATOM 44 CA ASN K 265 141.559 -19.213 321.191 1.00 62.37 ATOM 45 CA PHE K 266 142.992 -17.940 324.478 1.00 59.63 ATOM 46 CA ASN K 267 145.724 -20.305 325.621 1.00 75.35 ATOM 47 CA ASN K 268 147.987 -20.744 328.651 1.00 83.72 ATOM 48 CA PRO K 269 151.471 -20.828 327.049 1.00 86.81 ATOM 49 CA THR K 270 152.725 -23.157 329.796 1.00 66.68 ATOM 50 CA ASN K 271 150.333 -25.936 328.750 1.00 79.90 ATOM 51 CA TYR K 272 149.998 -26.979 325.104 1.00 81.09 ATOM 52 CA GLY K 273 146.308 -27.130 324.201 1.00 80.51 ATOM 53 CA GLN K 274 145.030 -25.476 327.376 1.00 85.79 ATOM 54 CA TYR K 275 142.322 -23.133 326.152 1.00 76.92 ATOM 55 CA THR K 276 140.323 -23.359 329.375 1.00 71.10 ATOM 56 CA ALA K 277 140.877 -22.425 333.052 1.00 67.99 ATOM 57 CA LEU K 278 142.117 -25.183 335.363 1.00 56.29 ATOM 58 CA ALA K 279 139.682 -26.093 338.128 1.00 62.43 ATOM 59 CA ASN K 280 139.128 -28.556 340.941 1.00 73.40 ATOM 60 CA ILE K 281 136.664 -30.474 338.790 1.00 67.17 ATOM 61 CA PRO K 282 137.152 -34.031 337.477 1.00 55.00 ATOM 62 CA GLY K 283 139.293 -33.761 334.360 1.00 53.40 ATOM 63 CA ALA K 284 139.902 -30.051 334.894 1.00 49.43 ATOM 64 CA CYS K 285 143.187 -30.336 336.835 1.00 46.40 ATOM 65 CA SER K 286 145.800 -32.759 338.134 1.00 52.14 ATOM 66 CA GLY K 287 144.333 -34.888 340.923 1.00 63.18 ATOM 67 CA ALA K 288 140.994 -33.102 340.584 1.00 61.30 ATOM 68 CA GLY K 289 138.279 -34.333 342.918 1.00 81.40 ATOM 69 CA THR K 290 140.757 -35.595 345.472 1.00 93.39 ATOM 70 CA ALA K 291 143.182 -34.588 348.240 1.00100.68 ATOM 71 CA ALA K 292 145.978 -34.395 345.664 1.00 78.01 ATOM 72 CA ALA K 293 144.014 -31.872 343.595 1.00 67.17 ATOM 73 CA THR K 294 146.180 -29.044 342.219 1.00 56.79 ATOM 74 CA VAL K 295 144.729 -26.182 340.170 1.00 67.46 ATOM 75 CA THR K 296 148.334 -25.438 339.189 1.00 77.96 ATOM 76 CA THR K 297 148.658 -28.445 336.876 1.00 60.67 ATOM 77 CA PRO K 298 146.266 -29.653 334.160 1.00 58.09 ATOM 78 CA ASP K 299 145.010 -33.228 333.794 1.00 59.67 ATOM 79 CA TYR K 300 147.193 -33.556 330.684 1.00 60.36 ATOM 80 CA GLY K 301 145.315 -36.481 329.199 1.00 59.27 ATOM 81 CA ASN K 302 142.131 -34.445 329.517 1.00 69.87 ATOM 82 CA THR K 303 143.265 -30.879 328.798 1.00 77.44 ATOM 83 CA GLY K 304 140.108 -30.109 326.830 1.00 85.54 ATOM 84 CA THR K 305 136.562 -29.426 328.096 1.00 84.75 ATOM 85 CA TYR K 306 133.071 -28.664 326.841 1.00 75.07 ATOM 86 CA ASN K 307 132.272 -26.709 330.002 1.00 67.13 ATOM 87 CA GLU K 308 131.790 -23.051 329.004 1.00 44.61 ATOM 88 CA GLN K 309 131.996 -22.140 332.701 1.00 57.17 ATOM 89 CA LEU K 310 135.754 -22.540 332.277 1.00 64.70 ATOM 90 CA ALA K 311 136.203 -20.342 329.164 1.00 63.88 ATOM 91 CA VAL K 312 137.152 -16.640 329.596 1.00 65.41 ATOM 92 CA LEU K 313 135.559 -14.790 326.702 1.00 75.24 ATOM 93 CA ASP K 314 132.300 -13.175 327.855 1.00 74.12 ATOM 94 CA SER K 315 131.294 -11.413 324.639 1.00 69.78 ATOM 95 CA ALA K 316 132.789 -10.415 321.307 1.00 88.45 ATOM 96 CA LYS K 317 132.209 -8.628 318.020 1.00 89.51 ATOM 97 CA ILE K 318 134.169 -7.682 314.922 1.00 92.74 ATOM 98 CA GLN K 319 134.325 -4.188 313.455 1.00 56.91 ATOM 99 CA LEU K 320 134.991 -3.003 309.913 1.00 48.69 ATOM 100 CA ASN K 321 136.338 0.519 309.707 1.00 41.11 ATOM 101 CA GLY K 322 134.877 1.326 313.124 1.00 53.42 ATOM 102 CA GLN K 323 131.535 -0.033 311.968 1.00 56.88 ATOM 103 CA ASP K 324 130.054 -3.080 313.719 1.00 56.45 ATOM 104 CA ARG K 325 130.127 -6.138 311.441 1.00 75.91 ATOM 105 CA PHE K 326 127.535 -7.591 313.775 1.00 84.93 ATOM 106 CA ALA K 327 126.022 -7.058 317.215 1.00 80.98 ATOM 107 CA THR K 328 127.825 -8.411 320.280 1.00 72.72 ATOM 108 CA ARG K 329 127.306 -12.067 321.125 1.00 67.72 ATOM 109 CA LYS K 330 128.486 -14.074 324.142 1.00 66.35 ATOM 110 CA GLY K 331 131.538 -16.298 323.850 1.00 81.26 ATOM 111 CA SER K 332 129.301 -19.383 323.902 1.00 44.85 ATOM 112 CA TYR K 333 127.766 -18.247 320.588 1.00 46.05 ATOM 113 CA PHE K 334 131.045 -18.472 318.663 1.00 63.59 ATOM 114 CA ASN K 335 131.826 -21.791 320.397 1.00 60.07 ATOM 115 CA LYS K 336 128.453 -23.533 320.056 1.00 45.93 ATOM 116 CA VAL K 337 126.228 -21.734 317.488 1.00 42.53 ATOM 117 CA GLN K 338 128.651 -20.643 314.752 1.00 45.52 ATOM 118 CA PRO K 339 130.006 -24.238 314.576 1.00 55.86 ATOM 119 CA TYR K 340 126.552 -25.866 314.827 1.00 63.62 ATOM 120 CA GLN K 341 125.341 -23.706 311.925 1.00 75.52 ATOM 121 CA SER K 342 128.339 -24.151 309.621 1.00 81.12 ATOM 122 CA ILE K 343 130.263 -27.246 310.741 1.00 85.91 ATOM 123 CA GLY K 344 127.938 -29.680 312.483 1.00 89.06 ATOM 124 CA GLY K 345 130.293 -31.212 315.024 1.00 76.72 ATOM 125 CA VAL K 346 131.145 -30.165 318.576 1.00 73.08 ATOM 126 CA THR K 347 133.909 -27.783 319.607 1.00 65.71 ATOM 127 CA PRO K 348 135.461 -27.805 323.100 1.00 81.26 ATOM 128 CA ALA K 349 135.091 -24.645 325.167 1.00 73.71 ATOM 129 CA GLY K 350 137.867 -22.140 324.494 1.00 78.37 ATOM 130 CA VAL K 351 137.743 -22.334 320.711 1.00 71.78 ATOM 131 CA TYR K 352 135.776 -19.723 318.785 1.00 73.92 ATOM 132 CA LEU K 353 134.722 -19.406 315.195 1.00 64.27 ATOM 133 CA TYR K 354 133.071 -16.778 313.053 1.00 72.96 ATOM 134 CA SER K 355 132.391 -17.827 309.499 1.00 70.33 ATOM 135 CA PHE K 356 131.983 -15.630 306.436 1.00 78.14 ATOM 136 CA ALA K 357 131.040 -18.795 304.528 1.00 87.01 ATOM 137 CA LEU K 358 128.019 -21.087 304.443 1.00 77.51 ATOM 138 CA LYS K 359 130.278 -24.171 304.587 1.00 74.35 ATOM 139 CA PRO K 360 133.720 -23.253 306.038 1.00 79.76 ATOM 140 CA ALA K 361 134.841 -26.873 306.017 1.00 74.71 ATOM 141 CA GLY K 362 134.097 -27.144 302.303 1.00 64.18 ATOM 142 CA ARG K 363 136.787 -26.628 299.664 1.00 68.33 ATOM 143 CA GLN K 364 134.413 -24.968 297.197 1.00 72.32 ATOM 144 CA PRO K 365 133.886 -21.259 298.067 1.00 88.51 ATOM 145 CA SER K 366 130.560 -20.361 299.670 1.00 79.07 ATOM 146 CA GLY K 367 130.968 -17.021 301.363 1.00 89.37 ATOM 147 CA THR K 368 134.026 -14.824 301.725 1.00 86.18 ATOM 148 CA CYS K 369 135.197 -11.451 303.027 1.00 81.55 ATOM 149 CA ASN K 370 138.025 -9.506 301.402 1.00 78.78 ATOM 150 CA PHE K 371 140.408 -8.206 304.061 1.00 64.36 ATOM 151 CA SER K 372 142.607 -6.721 301.347 1.00 49.65 ATOM 152 CA ARG K 373 139.889 -4.106 301.173 1.00 57.46 ATOM 153 CA ILE K 374 139.204 -3.456 304.859 1.00 47.33 ATOM 154 CA ASP K 375 141.514 -0.702 306.036 1.00 43.54 ATOM 155 CA ASN K 376 140.640 -1.466 309.643 1.00 51.05 ATOM 156 CA ALA K 377 139.573 -4.854 310.990 1.00 71.71 ATOM 157 CA THR K 378 139.293 -5.154 314.778 1.00 79.99 ATOM 158 CA LEU K 379 138.169 -7.807 317.252 1.00 94.25 ATOM 159 CA SER K 380 136.491 -6.269 320.296 1.00 72.15 ATOM 160 CA LEU K 381 136.820 -8.600 323.292 1.00 77.29 ATOM 161 CA THR K 382 135.302 -8.432 326.753 1.00 55.19 ATOM 162 CA TYR K 383 136.318 -11.020 329.316 1.00 57.50 ATOM 163 CA LYS K 384 134.375 -12.521 332.210 1.00 64.87 ATOM 164 CA THR K 385 135.315 -11.565 335.757 1.00 59.42 ATOM 165 CA CYS K 386 137.531 -14.402 336.976 1.00 52.83 ATOM 166 CA SER K 387 136.211 -14.430 340.536 1.00 56.80 ATOM 167 CA ILE K 388 135.248 -18.087 341.017 1.00 61.65 ATOM 168 CA ASP K 389 137.433 -20.033 343.438 1.00 61.29 ATOM 169 CA ALA K 390 139.054 -22.605 341.138 1.00 68.35 ATOM 170 CA THR K 391 139.735 -25.068 343.978 1.00 86.33 ATOM 171 CA SER K 392 136.055 -25.311 344.933 1.00 79.18 ATOM 172 CA PRO K 393 133.806 -27.823 343.073 1.00 65.12 ATOM 173 CA ALA K 394 130.620 -26.312 344.527 1.00 49.45 ATOM 174 CA ALA K 395 131.574 -22.860 343.253 1.00 60.84 ATOM 175 CA VAL K 396 132.654 -23.882 339.731 1.00 60.95 ATOM 176 CA LEU K 397 129.647 -26.179 339.137 1.00 58.43 ATOM 177 CA GLY K 398 127.058 -23.743 340.494 1.00 62.16 ATOM 178 CA ASN K 399 127.823 -20.316 339.055 1.00 75.90 ATOM 179 CA THR K 400 126.794 -17.407 336.807 1.00 92.70 ATOM 180 CA GLU K 401 127.308 -16.841 333.056 1.00 95.42 ATOM 181 CA THR K 402 129.605 -13.828 333.400 1.00 97.03 ATOM 182 CA VAL K 403 132.316 -15.276 335.650 1.00 78.53 ATOM 183 CA THR K 404 135.038 -17.950 335.466 1.00 68.10 ATOM 184 CA ALA K 405 137.651 -19.312 337.855 1.00 60.80 ATOM 185 CA ASN K 406 140.553 -17.011 338.842 1.00 48.81 ATOM 186 CA THR K 407 142.708 -19.603 337.149 1.00 70.49 ATOM 187 CA ALA K 408 141.586 -17.876 333.928 1.00 72.39 ATOM 188 CA THR K 409 144.315 -15.237 334.365 1.00 67.56 ATOM 189 CA LEU K 410 146.891 -17.607 332.875 1.00 79.59 ATOM 190 CA LEU K 411 145.117 -17.744 329.505 1.00 72.68 ATOM 191 CA THR K 412 147.127 -14.854 328.032 1.00 63.67 ATOM 192 CA ALA K 413 148.075 -16.097 324.572 1.00 64.64 ATOM 193 CA LEU K 414 145.422 -14.917 322.100 1.00 51.76 ATOM 194 CA ASN K 415 145.777 -16.856 318.857 1.00 66.87 ATOM 195 CA ILE K 416 143.717 -15.585 315.942 1.00 68.25 ATOM 196 CA TYR K 417 143.595 -17.491 312.665 1.00 80.61 ATOM 197 CA ALA K 418 142.139 -16.608 309.282 1.00 60.69 ATOM 198 CA LYS K 419 141.819 -19.043 306.395 1.00 73.73 ATOM 199 CA ASN K 420 141.812 -17.421 302.986 1.00 62.92 ATOM 200 CA TYR K 421 141.657 -18.189 299.287 1.00 76.22 ATOM 201 CA ASN K 422 144.360 -17.403 296.746 1.00 66.06 ATOM 202 CA VAL K 423 145.269 -18.507 293.245 1.00 60.38 ATOM 203 CA LEU K 424 148.267 -20.646 292.328 1.00 43.14 ATOM 204 CA ARG K 425 149.111 -20.265 288.620 1.00 48.64 ATOM 205 CA ILE K 426 151.424 -22.848 287.046 1.00 39.71 ATOM 206 CA MET K 427 152.968 -22.554 283.610 1.00 45.24 ATOM 207 CA SER K 428 156.222 -22.969 281.705 1.00 64.31 ATOM 208 CA GLY K 429 157.680 -25.175 284.411 1.00 64.14 ATOM 209 CA MET K 430 157.069 -22.913 287.377 1.00 55.23 ATOM 210 CA GLY K 431 154.368 -21.629 289.704 1.00 55.87 ATOM 211 CA GLY K 432 153.499 -18.640 291.836 1.00 63.48 ATOM 212 CA LEU K 433 150.696 -17.118 293.854 1.00 56.02 ATOM 213 CA ALA K 434 148.475 -14.639 292.035 1.00 61.10 ATOM 214 CA TYR K 435 148.127 -12.419 295.098 1.00 72.34 ATOM 215 CA ALA K 436 150.548 -11.311 297.790 1.00 78.92 ATOM 216 CA ASN K 437 149.850 -9.858 301.261 1.00 86.95 TER